Rh5CG462600

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
64494431 .. 64496852
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG462600.1

Sequence Viewer

Length: 1707 bp
ATGTCACCAACGAACGAAGCTCTTGTCCTCATCCAAAAAATGGTGAAAAGCCCGCCACTCAAAGCCTTGTCAATCTTCAACTCCTCAACTCTCCAAGGCTTCCACCACACCCACCACTCCATCTCCTTCATTCTTCACAATCTCATCTCCTCCAATATGCCATTGCACGCCCAGTCTCTCATTCTTCAACTCCTCTCCGGTCGAATCTCATCCCCATTCTTCACTCCCTCGTCCCTCCTCCACGATTTAACTCAACCCAAGTTGAGCTCAGTCCCCAACTCTAGTCATCTATACGAAGCAATCATCAACGCCCATGTTCAATCTCAGTTGCCAGAGCAAGCCCTTTACTATTTGAACAAAATGGTTGATCAAGGCCTCGTTCCCAGATCAAACACTTTCAATAACGTATTGGGTTTTCTTGTAAAGTCGAGAGATTTTGAGAAGGCTTGGTGGGTGTTCAATGAGTTTAAAGGTAAGGTGGGATTGGATTTGTATAGTTTTGGGATAGTTATAAAAAGTTGCTGCGAGGGTGGTGAATTGGATAGGGGTTTTGGGGTTTTGGATGAGATGGAGGAAATGGGTTGGTCTCCCAATGTGGTTATAAACACTACATTGATTGATGGGTGTTGCAAGAATGGTGATTTAGAGAGGGCAGAGAAGATGTTTTGTAAAATGGGGGAGCTTGGTTTGGTTGCTAATCAGTTTACATATACTGTGTTGATTGATGGGCTTTTCAAGAAAGGTCGGAATAAAGAAGGGTTTGAGTTGTATGAGAAGATGAAGATTAATGGGGTTGTTCCTAACATGCGTACTTATACTTGTTTGATCAGTGGGTGTTGCAACGATGGAAAAATGAATAGTGCCTTGAACCTGTTCGATGAAATGCGTGAGAGAGGAATGGCCTGCAATGTGGTCATATATAACATCCTAATTGGTGGGCTGTGTCGAGAAATGAGAGTTTGGGAAGCTGAGAAGTTTGTGAATGAGATGAAGAGGGATGGTATTAGTCCAAGTATAGTTACTTTCAACACTCTGATTGATGGGTTTTGTGGTCTTGGAAAGTTGGACAAGGCATTGAGTTTGTTTGATCAGCTGAAGTCGAGTGGGCAATCTCCGTCTCTGGTGACTTATAATGTTCTGATTCGAGGCTTTGCCAAAGCTCAAAACTCTGCTGGAGTTATTGATTTGGTGAGAGAGATGGAGAACAGAGGCATGTCTCCTTCTAAGGTGACATATACAATTGTAATTGATGCCTTGGTTCGATCCGATGACATGGAAAGAGCATTTCATGTGTTCTCCTCCATGGAGAAGGCTGGTCTGGTGCCTGATGTCTACACGTATGGGGTCTTAATACATGGATTATGCATGAAAGGTAATATGATTGAAGCATCAAAGCTGTTACAATCAATGAGCGATTCACATTTGGAGCCAAGTGATGTCATATTTAATATAATGATTCATGGCTACTGCAAAGAGGGTAGCTCTTACAGGGCACTGAGGTTGCTCAAAGAAATGAGAAAGAAAGGAATGGTTCCGAATGTGGCTAGTTACAGTTCGACCATTGGAGTTCTTTGTAATGATGGGAAATGGGAAGAAGCTGAAATACTACTTAAAGAAATGACGGACTCAGATTCGAAACCATCAGTTTCTTTGTATAATATAATTTCTAGAGTGAAAAATGATACACTGGTGAAGTTATCAACCTAA

Protein Analysis

568

Amino Acids

63.33

Weight (kDa)

6.89

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 160 - 292 2.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 186 - 242 3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 194 - 225 1.8e-09 PPR repeat
PPR_2 PF13041 197 - 246 6e-15 PPR repeat family
PPR PF01535 203 - 230 1.5e-07 PPR repeat
PPR_long PF17177 206 - 337 4.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 229 - 261 1.1e-07 PPR repeat
PPR_2 PF13041 233 - 281 2e-16 PPR repeat family
PPR PF01535 235 - 265 2.9e-06 PPR repeat
PPR_3 PF13812 256 - 312 7.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 263 - 296 2.4e-12 PPR repeat
PPR_2 PF13041 271 - 316 2.5e-15 PPR repeat family
PPR PF01535 271 - 299 3.6e-09 PPR repeat
PPR_1 PF12854 298 - 331 2.8e-11 PPR repeat
PPR_2 PF13041 303 - 350 5.7e-17 PPR repeat family
PPR PF01535 305 - 335 3.5e-07 PPR repeat
PPR_3 PF13812 327 - 383 1.9e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 333 - 365 2.1e-11 PPR repeat
PPR_2 PF13041 337 - 386 3.1e-17 PPR repeat family
PPR PF01535 340 - 369 5.1e-08 PPR repeat
PPR_long PF17177 358 - 480 1.2e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 374 - 421 1.9e-12 PPR repeat family
PPR_3 PF13812 396 - 452 1.1e-09 Pentatricopeptide repeat domain
PPR PF01535 410 - 440 1e-05 PPR repeat
PPR_2 PF13041 410 - 455 2e-15 PPR repeat family
PPR_3 PF13812 438 - 489 6.8e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 439 - 470 1.2e-09 PPR repeat
PPR_3 PF13812 465 - 524 5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 475 - 506 1.9e-08 PPR repeat
PPR_2 PF13041 477 - 526 4.2e-14 PPR repeat family
PPR PF01535 480 - 509 3.4e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013053)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 512, 602, 1131
AccB1I GGYRCC 1 cut(s) 1321
AccB7I CCANNNNNTGG 1 cut(s) 40
AccI GTMKAC 1 cut(s) 1332
AciI CCGC 1 cut(s) 53
AclWI GGATC 1 cut(s) 1257
AcuI CTGAAG 1 cut(s) 1115
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 1335
AluBI AGCT 9 cut(s) 20, 267, 682, 968, 1093, 1160, 1396, 1482, 1598
AluI AGCT 9 cut(s) 20, 267, 682, 968, 1093, 1160, 1396, 1482, 1598
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 4 cut(s) 180, 591, 1122, 1221
AlwI GGATC 1 cut(s) 1257
AoxI GGCC 2 cut(s) 373, 900
ApeKI GCWGC 1 cut(s) 522
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AseI ATTAAT 1 cut(s) 786
Asp700I GAANNNNTTC 1 cut(s) 872
AsuHPI GGTGA 7 cut(s) 55, 545, 650, 1135, 1201, 1240, 1702
AsuII TTCGAA 1 cut(s) 1634
BaeGI GKGCMC 1 cut(s) 1495
BaeI ACNNNNGTAYC 2 cut(s) 1674, 1707
BanI GGYRCC 1 cut(s) 1321
BanII GRGCYC 1 cut(s) 269
BarI GAAGNNNNNNTAC 2 cut(s) 1587, 1619
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 509
BclI TGATCA 3 cut(s) 367, 825, 1087
BcoDI GTCTC 4 cut(s) 180, 591, 1122, 1221
BfaI CTAG 3 cut(s) 282, 1545, 1668
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
BmiI GGNNCC 3 cut(s) 1323, 1428, 1533
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 1240, 1397
BmuI ACTGGG 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 1466, 1498
BpmI CTGGAG 1 cut(s) 1194
Bpu14I TTCGAA 1 cut(s) 1634
BsaAI YACGTR 1 cut(s) 1338
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 3 cut(s) 94, 1254, 1302
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 2 cut(s) 172, 1692
Bse3DI GCAATG 2 cut(s) 161, 913
BseDI CCNNGG 3 cut(s) 94, 1254, 1302
BseGI GGATG 5 cut(s) 30, 209, 568, 924, 1003
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 2 cut(s) 161, 913
BseMII CTCAG 5 cut(s) 282, 338, 960, 1487, 1641
BseNI ACTGG 2 cut(s) 172, 1692
BseRI GAGGAG 5 cut(s) 73, 139, 182, 227, 1288
BseSI GKGCMC 1 cut(s) 1495
BseXI GCAGC 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 375, 902
BshNI GGYRCC 1 cut(s) 1321
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 2 cut(s) 217, 257
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 4 cut(s) 180, 591, 1122, 1221
BsmBI CGTCTC 1 cut(s) 1122
BsmFI GGGAC 2 cut(s) 217, 257
BsnI GGCC 2 cut(s) 375, 902
Bso31I GGTCTC 1 cut(s) 591
Bsp119I TTCGAA 1 cut(s) 1634
Bsp1286I GDGCHC 2 cut(s) 269, 1495
Bsp143I GATC 5 cut(s) 367, 386, 825, 1087, 1262
Bsp19I CCATGG 1 cut(s) 1302
BspACI CCGC 1 cut(s) 53
BspANI GGCC 2 cut(s) 375, 902
BspCNI CTCAG 5 cut(s) 281, 337, 961, 1488, 1640
BspLI GGNNCC 3 cut(s) 1323, 1428, 1533
BspPI GGATC 1 cut(s) 1257
BspT104I TTCGAA 1 cut(s) 1634
BspT107I GGYRCC 1 cut(s) 1321
BspTNI GGTCTC 1 cut(s) 591
BsrDI GCAATG 2 cut(s) 161, 913
BsrI ACTGG 2 cut(s) 172, 1692
BssECI CCNNGG 3 cut(s) 94, 1254, 1302
BssMI GATC 5 cut(s) 367, 386, 825, 1087, 1262
BssT1I CCWWGG 3 cut(s) 94, 1254, 1302
Bst4CI ACNGT 2 cut(s) 715, 1553
Bst6I CTCTTC 1 cut(s) 986
BstBAI YACGTR 1 cut(s) 1338
BstBI TTCGAA 1 cut(s) 1634
BstC8I GCNNGC 4 cut(s) 53, 168, 339, 904
BstDEI CTNAG 6 cut(s) 268, 324, 969, 1224, 1496, 1627
BstDSI CCRYGG 1 cut(s) 1302
BstF5I GGATG 5 cut(s) 30, 209, 568, 924, 1003
BstKTI GATC 5 cut(s) 370, 389, 828, 1090, 1265
BstMAI GTCTC 4 cut(s) 180, 591, 1122, 1221
BstMBI GATC 5 cut(s) 367, 386, 825, 1087, 1262
BstMCI CGRYCG 1 cut(s) 202
BstNSI RCATGY 2 cut(s) 808, 1216
BstSLI GKGCMC 1 cut(s) 1495
BstV1I GCAGC 1 cut(s) 509
BsuRI GGCC 2 cut(s) 375, 902
BtgI CCRYGG 1 cut(s) 1302
BtsCI GGATG 5 cut(s) 30, 209, 568, 924, 1003
BtsIMutI CAGTG 3 cut(s) 835, 1493, 1685
Cac8I GCNNGC 4 cut(s) 53, 168, 339, 904
Csp6I GTAC 1 cut(s) 810
CviAII CATG 9 cut(s) 314, 805, 1213, 1273, 1289, 1303, 1355, 1366, 1460
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 6 cut(s) 268, 324, 969, 1224, 1496, 1627
DpnI GATC 5 cut(s) 369, 388, 827, 1089, 1264
DpnII GATC 5 cut(s) 367, 386, 825, 1087, 1262
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 1 cut(s) 986
EarI CTCTTC 1 cut(s) 986
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 3 cut(s) 94, 1254, 1302
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 1115
EcoICRI GAGCTC 1 cut(s) 267
EcoT14I CCWWGG 3 cut(s) 94, 1254, 1302
EcoT22I ATGCAT 1 cut(s) 1367
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 3 cut(s) 94, 1254, 1302
Esp3I CGTCTC 1 cut(s) 1122
FaeI CATG 9 cut(s) 317, 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
FaqI GGGAC 2 cut(s) 217, 257
FatI CATG 9 cut(s) 313, 804, 1212, 1272, 1288, 1302, 1354, 1365, 1459
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 3 cut(s) 367, 825, 1087
FblI GTMKAC 1 cut(s) 1332
Fnu4HI GCNGC 1 cut(s) 523
FokI GGATG 5 cut(s) 17, 196, 575, 911, 1010
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 523
FspBI CTAG 3 cut(s) 282, 1545, 1668
GluI GCNGC 1 cut(s) 523
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 2 cut(s) 375, 902
HapII CCGG 1 cut(s) 198
Hin1II CATG 9 cut(s) 317, 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
HinfI GANTC 6 cut(s) 204, 1141, 1415, 1456, 1625, 1631
HpaII CCGG 1 cut(s) 198
HphI GGTGA 7 cut(s) 55, 545, 650, 1135, 1201, 1240, 1702
Hpy166II GTNNAC 2 cut(s) 705, 1333
Hpy188I TCNGA 6 cut(s) 747, 1035, 1140, 1267, 1536, 1630
Hpy188III TCNNGA 4 cut(s) 429, 736, 947, 1668
Hpy8I GTNNAC 2 cut(s) 705, 1333
HpyAV CCTTC 5 cut(s) 136, 436, 749, 1230, 1303
HpyCH4III ACNGT 2 cut(s) 715, 1553
HpyCH4IV ACGT 2 cut(s) 405, 1337
HpyCH4V TGCA 6 cut(s) 166, 630, 840, 906, 1365, 1470
HpyF3I CTNAG 6 cut(s) 268, 324, 969, 1224, 1496, 1627
HpySE526I ACGT 2 cut(s) 405, 1337
Hsp92II CATG 9 cut(s) 317, 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
Ksp22I TGATCA 3 cut(s) 367, 825, 1087
Kzo9I GATC 5 cut(s) 367, 386, 825, 1087, 1262
LmnI GCTCC 2 cut(s) 679, 1426
Lsp1109I GCAGC 1 cut(s) 509
LweI GCATC 2 cut(s) 1240, 1397
MaeI CTAG 3 cut(s) 282, 1545, 1668
MaeII ACGT 2 cut(s) 405, 1337
MaeIII GTNAC 6 cut(s) 3, 1018, 1123, 1228, 1398, 1547
MalI GATC 5 cut(s) 369, 388, 827, 1089, 1264
MboI GATC 5 cut(s) 367, 386, 825, 1087, 1262
MboII GAAGA 9 cut(s) 67, 125, 176, 211, 670, 787, 793, 1003, 1604
MfeI CAATTG 1 cut(s) 1239
MhlI GDGCHC 2 cut(s) 269, 1495
MluCI AATT 5 cut(s) 536, 930, 1239, 1245, 1662
MlyI GAGTC 1 cut(s) 1619
MmeI TCCRAC 2 cut(s) 725, 1044
Mph1103I ATGCAT 1 cut(s) 1367
MroXI GAANNNNTTC 1 cut(s) 872
MseI TTAA 6 cut(s) 248, 468, 786, 1349, 1446, 1611
MspA1I CMGCKG 1 cut(s) 1093
MspI CCGG 1 cut(s) 198
MunI CAATTG 1 cut(s) 1239
NcoI CCATGG 1 cut(s) 1302
NdeII GATC 5 cut(s) 367, 386, 825, 1087, 1262
NlaIII CATG 9 cut(s) 317, 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
NlaIV GGNNCC 3 cut(s) 1323, 1428, 1533
NmuCI GTSAC 3 cut(s) 3, 1123, 1228
NsiI ATGCAT 1 cut(s) 1367
NspI RCATGY 2 cut(s) 808, 1216
NspV TTCGAA 1 cut(s) 1634
PceI AGGCCT 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 872
PfeI GAWTC 5 cut(s) 204, 1141, 1415, 1456, 1631
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 1 cut(s) 524
PleI GAGTC 1 cut(s) 1619
PpsI GAGTC 1 cut(s) 1619
Ppu21I YACGTR 1 cut(s) 1338
PshBI ATTAAT 1 cut(s) 786
PsiI TTATAA 3 cut(s) 512, 602, 1131
Psp124BI GAGCTC 1 cut(s) 269
PspN4I GGNNCC 3 cut(s) 1323, 1428, 1533
PvuII CAGCTG 1 cut(s) 1093
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 6 cut(s) 248, 468, 786, 1349, 1446, 1611
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 5 cut(s) 367, 386, 825, 1087, 1262
SchI GAGTC 1 cut(s) 1619
SduI GDGCHC 2 cut(s) 269, 1495
SfaNI GCATC 2 cut(s) 1240, 1397
SfuI TTCGAA 1 cut(s) 1634
Sse9I AATT 5 cut(s) 536, 930, 1239, 1245, 1662
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 1 cut(s) 53
SspMI CTAG 3 cut(s) 282, 1545, 1668
SstI GAGCTC 1 cut(s) 269
StuI AGGCCT 1 cut(s) 375
StyI CCWWGG 3 cut(s) 94, 1254, 1302
TaaI ACNGT 2 cut(s) 715, 1553
TaiI ACGT 2 cut(s) 408, 1340
TaqI TCGA 9 cut(s) 202, 428, 876, 946, 1100, 1144, 1261, 1556, 1634
TasI AATT 5 cut(s) 536, 930, 1239, 1245, 1662
TfiI GAWTC 5 cut(s) 204, 1141, 1415, 1456, 1631
Tru1I TTAA 6 cut(s) 248, 468, 786, 1349, 1446, 1611
Tru9I TTAA 6 cut(s) 248, 468, 786, 1349, 1446, 1611
TscAI CASTG 3 cut(s) 835, 1500, 1692
TseFI GTSAC 3 cut(s) 3, 1123, 1228
TseI GCWGC 1 cut(s) 522
Tsp45I GTSAC 3 cut(s) 3, 1123, 1228
TspDTI ATGAA 8 cut(s) 118, 794, 869, 894, 1004, 1277, 1382, 1448
TspGWI ACGGA 2 cut(s) 1104, 1637
TspRI CASTG 3 cut(s) 835, 1500, 1692
Van91I CCANNNNNTGG 1 cut(s) 40
VspI ATTAAT 1 cut(s) 786
XbaI TCTAGA 1 cut(s) 1667
XceI RCATGY 2 cut(s) 808, 1216
XmiI GTMKAC 1 cut(s) 1332
XmnI GAANNNNTTC 1 cut(s) 872
XspI CTAG 3 cut(s) 282, 1545, 1668
Zsp2I ATGCAT 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.