Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025431.1

Orthogroup ID

OG0013053

Physical Location & Seq

Genomic Coordinates Reverse (-)

601 .. 2307

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

atgtcaccaacgaacgaagctcttctcctcatccaaaaaatggtgaaaagcccgccactcaaagccttgtcaatcttcaactcctcaactctccaaggcttccaccacacccaccactccatctccttcattcttcacaacctcatctcctccaatatgccaatgcacgcccagtccctcattcttcaactcctctccggtcgaatctcatccccattcttcactccctcgtccctcctccacgatttaactcaacccaagttgagcttagtccccacctctggtcatctatacgaagcaatcatcaacgcccacgttcaaactcagttgccagagcaagccctttactatttgaacaaaatggttgagcagggcctcgttcccagatcaaacactttcaataacatattggttttccttgttaagttgagagattttgaaaaggcttggtgggtgttcaatgagtttaaaggaaaggtgggattggatttgtatagttttgggatagttataaaaagttgctgcgagggtggtgaattggataggggttttggggttttggatgagatggaggaaatgggttggtctcccaatgtggttatatacactacattgattgatgggtgttgcaagaatggtgatttagagagggcagagaagatgttttgtaaaatgagggagcttggtttggttgctaatcagtttacatatactgtgttgattgatgggcttttcaagaaaggtcggaataaagaagggtttgagttgtatgagaagatgaagattaatggggttgttcctaacatgcgtacttatacttgtttgatcagtggttgttgcaacgatggaaaaatgaatagtgccttgaacctgttcgatgaaatgcgtgagagaggaatggcctgcaatgtggtcacatataacatcctaattggtgggttgtgtcgagaaatgagagtttgggaagctgagaagtttgtgaatgagatgaagagggatggtattagtctgagtatagttactttcaacactctgatagatgggttttgtggtcttggaaagttggacaaggcattgagtttgtttgatcagctgaagtcgagtggacaatctccgtctctggtgacttataatgttctgattcgaggctttgccaaagctcaaaactctgctggagttactgatttggtgagagagatggagaacagaggcatgtctccttctaaagtgacatatacaattgtaattgatgccttggttcgatctgatgacatggaaagagcatttcatgtgttctcctccatggagaaggctggtctggtgcctgatgtctacacttttggggtcttaatacatggattatgcatgaaaggtaatatgattgaagcatcaaagctgttacagtcaatgagcgattcacatttggagccaagtgatgtcatatttaatataatgattcatggctactgcaaagagggtagctcttacagggcactgaggttgctcaaagaaatgagaaagaaaggaatggttccgaatgtggctagttacagttcgaccattggagttctttgtaatgatgggaaatgggaagaagctgaaatactacttaaagaaatgacggactcagattcgaaaccatcagtttctttgtataatataatttctagagtgaaaaatgatacaccggtgaagttatcaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

568

Amino Acids

63.56

Weight (kDa)

7.17

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11690 AT4G11690
fragaria_vesca	FvH4_3g36170
malus_domestica	MD03G1092900.v1.1
prunus_persica	Prupe.6G076800_v2.0.a1
pyrus_communis	pycom03g07420
rosa_chinensis	RchiOBHm_Chr5g0064671 RchiOBHm_Chr5g0064911
rosa_laevigata	RLG00000035740 RLG00000035742
rosa_multiflora	Rmu_sc0020903.1_g000003 Rmu_sc0025431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016400
rosa_rugosa	Rorug05G0366600
rosa_samantha	Rh5AG425100 Rh5CG462600 Rh5DG453100
rosa_wichuraiana	Rw5G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	512, 1131
AccB1I	GGYRCC	1 cut(s)	1321
AccB7I	CCANNNNNTGG	1 cut(s)	40
AccI	GTMKAC	1 cut(s)	1332
AciI	CCGC	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	1115
AfaI	GTAC	1 cut(s)	811
AfiI	CCNNNNNNNGG	2 cut(s)	40, 281
AgeI	ACCGGT	1 cut(s)	1687
AluBI	AGCT	9 cut(s)	20, 267, 682, 968, 1093, 1160, 1396, 1482, 1598
AluI	AGCT	9 cut(s)	20, 267, 682, 968, 1093, 1160, 1396, 1482, 1598
Alw26I	GTCTC	3 cut(s)	591, 1122, 1221
AoxI	GGCC	2 cut(s)	373, 900
ApeKI	GCWGC	1 cut(s)	522
AseI	ATTAAT	1 cut(s)	786
AsiGI	ACCGGT	1 cut(s)	1687
Asp700I	GAANNNNTTC	2 cut(s)	21, 872
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	6 cut(s)	55, 545, 650, 1135, 1201, 1702
AsuII	TTCGAA	1 cut(s)	1634
BaeGI	GKGCMC	1 cut(s)	1495
BaeI	ACNNNNGTAYC	2 cut(s)	1674, 1707
BanI	GGYRCC	1 cut(s)	1321
BarI	GAAGNNNNNNTAC	2 cut(s)	1587, 1619
BbvI	GCAGC	1 cut(s)	509
BclI	TGATCA	2 cut(s)	825, 1087
BcoDI	GTCTC	3 cut(s)	591, 1122, 1221
BfaI	CTAG	2 cut(s)	1545, 1668
BisI	GCNGC	1 cut(s)	523
BlsI	GCNGC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	1323, 1428, 1533
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	1240, 1397
BmuI	ACTGGG	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	1466, 1498
BpmI	CTGGAG	1 cut(s)	1194
Bpu14I	TTCGAA	1 cut(s)	1634
BsaI	GGTCTC	1 cut(s)	591
BsaJI	CCNNGG	3 cut(s)	94, 1254, 1302
BsaWI	WCCGGW	2 cut(s)	197, 1687
BsaXI	ACNNNNNCTCC	4 cut(s)	107, 131, 137, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 281
Bse118I	RCCGGY	1 cut(s)	1687
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	913
BseDI	CCNNGG	3 cut(s)	94, 1254, 1302
BseGI	GGATG	5 cut(s)	30, 209, 568, 924, 1003
BseLI	CCNNNNNNNGG	2 cut(s)	40, 281
BseMI	GCAATG	1 cut(s)	913
BseMII	CTCAG	5 cut(s)	338, 960, 1001, 1487, 1641
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	6 cut(s)	17, 73, 139, 182, 227, 1288
BseSI	GKGCMC	1 cut(s)	1495
BseXI	GCAGC	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	375, 902
BshNI	GGYRCC	1 cut(s)	1321
BshTI	ACCGGT	1 cut(s)	1687
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	198, 1688
BslFI	GGGAC	3 cut(s)	160, 217, 257
BslI	CCNNNNNNNGG	2 cut(s)	40, 281
BsmAI	GTCTC	3 cut(s)	591, 1122, 1221
BsmBI	CGTCTC	1 cut(s)	1122
BsmFI	GGGAC	3 cut(s)	160, 217, 257
BsnI	GGCC	2 cut(s)	375, 902
Bso31I	GGTCTC	1 cut(s)	591
Bsp119I	TTCGAA	1 cut(s)	1634
Bsp1286I	GDGCHC	1 cut(s)	1495
Bsp143I	GATC	4 cut(s)	386, 825, 1087, 1262
Bsp19I	CCATGG	1 cut(s)	1302
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	2 cut(s)	375, 902
BspCNI	CTCAG	5 cut(s)	337, 961, 1002, 1488, 1640
BspLI	GGNNCC	3 cut(s)	1323, 1428, 1533
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	1634
BspT107I	GGYRCC	1 cut(s)	1321
BspTNI	GGTCTC	1 cut(s)	591
BsrDI	GCAATG	1 cut(s)	913
BsrFI	RCCGGY	1 cut(s)	1687
BsrI	ACTGG	1 cut(s)	172
BssAI	RCCGGY	1 cut(s)	1687
BssECI	CCNNGG	3 cut(s)	94, 1254, 1302
BssMI	GATC	4 cut(s)	386, 825, 1087, 1262
BssT1I	CCWWGG	3 cut(s)	94, 1254, 1302
Bst4CI	ACNGT	3 cut(s)	715, 1404, 1553
Bst6I	CTCTTC	2 cut(s)	27, 986
BstBI	TTCGAA	1 cut(s)	1634
BstC8I	GCNNGC	4 cut(s)	53, 168, 339, 904
BstDEI	CTNAG	6 cut(s)	268, 324, 969, 1010, 1496, 1627
BstDSI	CCRYGG	1 cut(s)	1302
BstF5I	GGATG	5 cut(s)	30, 209, 568, 924, 1003
BstKTI	GATC	4 cut(s)	389, 828, 1090, 1265
BstMAI	GTCTC	3 cut(s)	591, 1122, 1221
BstMBI	GATC	4 cut(s)	386, 825, 1087, 1262
BstMCI	CGRYCG	1 cut(s)	202
BstNSI	RCATGY	2 cut(s)	808, 1216
BstSLI	GKGCMC	1 cut(s)	1495
BstV1I	GCAGC	1 cut(s)	509
BsuRI	GGCC	2 cut(s)	375, 902
BtgI	CCRYGG	1 cut(s)	1302
BtsCI	GGATG	5 cut(s)	30, 209, 568, 924, 1003
BtsIMutI	CAGTG	2 cut(s)	835, 1493
Cac8I	GCNNGC	4 cut(s)	53, 168, 339, 904
Cfr10I	RCCGGY	1 cut(s)	1687
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	810
CspAI	ACCGGT	1 cut(s)	1687
CviAII	CATG	8 cut(s)	805, 1213, 1273, 1289, 1303, 1355, 1366, 1460
CviQI	GTAC	1 cut(s)	810
DdeI	CTNAG	6 cut(s)	268, 324, 969, 1010, 1496, 1627
DpnI	GATC	4 cut(s)	388, 827, 1089, 1264
DpnII	GATC	4 cut(s)	386, 825, 1087, 1262
DraI	TTTAAA	1 cut(s)	469
Eam1104I	CTCTTC	2 cut(s)	27, 986
EarI	CTCTTC	2 cut(s)	27, 986
Eco130I	CCWWGG	3 cut(s)	94, 1254, 1302
Eco31I	GGTCTC	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	1115
EcoO109I	RGGNCCY	1 cut(s)	373
EcoT14I	CCWWGG	3 cut(s)	94, 1254, 1302
EcoT22I	ATGCAT	1 cut(s)	1367
ErhI	CCWWGG	3 cut(s)	94, 1254, 1302
Esp3I	CGTCTC	1 cut(s)	1122
FaeI	CATG	8 cut(s)	808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	3 cut(s)	160, 217, 257
FatI	CATG	8 cut(s)	804, 1212, 1272, 1288, 1302, 1354, 1365, 1459
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	2 cut(s)	825, 1087
FblI	GTMKAC	1 cut(s)	1332
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	5 cut(s)	17, 196, 575, 911, 1010
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	2 cut(s)	1545, 1668
GluI	GCNGC	1 cut(s)	523
GsuI	CTGGAG	1 cut(s)	1194
HaeIII	GGCC	2 cut(s)	375, 902
HapII	CCGG	2 cut(s)	198, 1688
Hin1II	CATG	8 cut(s)	808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
HinfI	GANTC	6 cut(s)	204, 1141, 1415, 1456, 1625, 1631
HpaII	CCGG	2 cut(s)	198, 1688
HphI	GGTGA	6 cut(s)	55, 545, 650, 1135, 1201, 1702
Hpy166II	GTNNAC	3 cut(s)	705, 1106, 1333
Hpy188I	TCNGA	7 cut(s)	747, 1011, 1035, 1140, 1267, 1536, 1630
Hpy188III	TCNNGA	3 cut(s)	736, 947, 1668
Hpy8I	GTNNAC	3 cut(s)	705, 1106, 1333
HpyAV	CCTTC	4 cut(s)	136, 749, 1230, 1303
HpyCH4III	ACNGT	3 cut(s)	715, 1404, 1553
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	6 cut(s)	166, 630, 840, 906, 1365, 1470
HpyF3I	CTNAG	6 cut(s)	268, 324, 969, 1010, 1496, 1627
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	8 cut(s)	808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
Ksp22I	TGATCA	2 cut(s)	825, 1087
Kzo9I	GATC	4 cut(s)	386, 825, 1087, 1262
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	2 cut(s)	679, 1426
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	2 cut(s)	1240, 1397
MaeI	CTAG	2 cut(s)	1545, 1668
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	8 cut(s)	3, 913, 1018, 1123, 1177, 1228, 1398, 1547
MalI	GATC	4 cut(s)	388, 827, 1089, 1264
MboI	GATC	4 cut(s)	386, 825, 1087, 1262
MfeI	CAATTG	1 cut(s)	1239
MhlI	GDGCHC	1 cut(s)	1495
MluCI	AATT	5 cut(s)	536, 930, 1239, 1245, 1662
MlyI	GAGTC	1 cut(s)	1619
MmeI	TCCRAC	2 cut(s)	725, 1044
Mph1103I	ATGCAT	1 cut(s)	1367
MroXI	GAANNNNTTC	2 cut(s)	21, 872
MseI	TTAA	7 cut(s)	248, 423, 468, 786, 1349, 1446, 1611
MspA1I	CMGCKG	1 cut(s)	1093
MspI	CCGG	2 cut(s)	198, 1688
MunI	CAATTG	1 cut(s)	1239
NcoI	CCATGG	1 cut(s)	1302
NdeII	GATC	4 cut(s)	386, 825, 1087, 1262
NlaIII	CATG	8 cut(s)	808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
NlaIV	GGNNCC	3 cut(s)	1323, 1428, 1533
NmuCI	GTSAC	4 cut(s)	3, 913, 1123, 1228
NsiI	ATGCAT	1 cut(s)	1367
NspI	RCATGY	2 cut(s)	808, 1216
NspV	TTCGAA	1 cut(s)	1634
PciSI	GCTCTTC	1 cut(s)	27
PdmI	GAANNNNTTC	2 cut(s)	21, 872
PfeI	GAWTC	5 cut(s)	204, 1141, 1415, 1456, 1631
PflMI	CCANNNNNTGG	1 cut(s)	40
PinAI	ACCGGT	1 cut(s)	1687
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	1 cut(s)	1619
PpsI	GAGTC	1 cut(s)	1619
PshBI	ATTAAT	1 cut(s)	786
PsiI	TTATAA	2 cut(s)	512, 1131
PspN4I	GGNNCC	3 cut(s)	1323, 1428, 1533
PspPI	GGNCC	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	1093
RsaI	GTAC	1 cut(s)	811
RsaNI	GTAC	1 cut(s)	810
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	7 cut(s)	248, 423, 468, 786, 1349, 1446, 1611
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	4 cut(s)	386, 825, 1087, 1262
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	1 cut(s)	1619
SduI	GDGCHC	1 cut(s)	1495
SfaNI	GCATC	2 cut(s)	1240, 1397
SfuI	TTCGAA	1 cut(s)	1634
SgrAI	CRCCGGYG	1 cut(s)	1687
Sse9I	AATT	5 cut(s)	536, 930, 1239, 1245, 1662
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	2 cut(s)	1545, 1668
StyI	CCWWGG	3 cut(s)	94, 1254, 1302
TaaI	ACNGT	3 cut(s)	715, 1404, 1553
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	8 cut(s)	202, 876, 946, 1100, 1144, 1261, 1556, 1634
TasI	AATT	5 cut(s)	536, 930, 1239, 1245, 1662
TfiI	GAWTC	5 cut(s)	204, 1141, 1415, 1456, 1631
Tru1I	TTAA	7 cut(s)	248, 423, 468, 786, 1349, 1446, 1611
Tru9I	TTAA	7 cut(s)	248, 423, 468, 786, 1349, 1446, 1611
TscAI	CASTG	2 cut(s)	835, 1500
TseFI	GTSAC	4 cut(s)	3, 913, 1123, 1228
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	4 cut(s)	3, 913, 1123, 1228
TspDTI	ATGAA	8 cut(s)	118, 794, 869, 894, 1004, 1277, 1382, 1448
TspGWI	ACGGA	2 cut(s)	1104, 1637
TspRI	CASTG	2 cut(s)	835, 1500
Van91I	CCANNNNNTGG	1 cut(s)	40
VspI	ATTAAT	1 cut(s)	786
XbaI	TCTAGA	1 cut(s)	1667
XceI	RCATGY	2 cut(s)	808, 1216
XmiI	GTMKAC	1 cut(s)	1332
XmnI	GAANNNNTTC	2 cut(s)	21, 872
XspI	CTAG	2 cut(s)	1545, 1668
Zsp2I	ATGCAT	1 cut(s)	1367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.