Rroxscaffold_1G00016400

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
20409161 .. 20410867
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016400.1

Sequence Viewer

Length: 1707 bp
ATGTCACCAACGAACGAAGCTCTTGTCCTCATTCAAAAAATGGTGAAAAGCCCGCCACTGAAAGCCTTGTCAATCTACAACTCCTCCACTCTCCAAGGCTTCAACCACACCCACCACTCCATCTCCTTCATTCTTCACAACCTCATCTCCTCCAATATGCCAATGCACGCCCAGTCCCTCATTCTTCAACTCCTCTCCGGTCGAATCTCATCCCCATTCTTCACTCCCTCGTCTCTCCTCCACGATTTAACTCAACCCAGGTTGAGCTCAATCCCCACCTCTGGTCATCTATACGAAGCAATCATCAACGCACATGTTCAATCTCAGTTGCCAGAGCAAGCCCTTTACTATTTGAACAAAATGGTTGAGCAAGGCCTCGTTCCCAGATCAAACACTTTCAATAAAGTATTGGGTTTCCTTGTTAAGTCGAGAGATTTTGAGAAGGCTTGGTGGGTGTTCAATGAGTTTAAAGGTAAGGTTGGATTGGACTTGTATAGTTTTGGGATAGTTATAAAATGTTGCTGCGAGGGTGGTGAATTGGATAGGGGTTTTAGGGTTTTGGATGAGATGGAGGAAATGGGTTGGTCTCCGAATGTGGTTATATACACTACATTGATTGATGGGTGTTGCAAGAATGGTGATTTAGAGAGGGCAGAGAAGATGTTTTGTAAGATGGGGGAGCTTGGTTTGGTTGCTAATCAGTTTACATATACTGTGTTGATTGATGGGCTTTTCAAGAAAGGTCGGAATAAAGAAGGGTTTGAGTTGTATGAGAAGATGAAGATTAATGGGGTTGTTCCTAACATGCGTACTTATACTTGTTTGATTAGTGGGTGTTGCAACGATGGAAAAATGAATAGTGCCTTGAACCTGTTCGATGAAATGCGTGAGGGAGGAATGGCCTGCAATGTGGTCACATACAACATCCTAATTGGTGGGTTGTGTCGAGAAATGAGGGTTTGGGAAGCAGAGAAGTTTGTGAATGAGATGAAGAGGGATGGTATTAGTCCTAGTATAGTTACTTTCAACACTCTGATTGATGGGTTTTGTGGTCTTGGAAAGTTGGACAAGGCGTTGAGTTTGTTTGATCAGCTGAAGTCGAGTGGACAATCTCTGTCTCTGGTGACTTATAATGTTCTGATTCAAGGCTTTGCCAAAGCACGAAACTCTGCTGGAGTTATTGATTTGGTGAGAGAGATGGAGAACAGAGGCATGTCTCCTTCTAAAGTGACGTATACAATTGTAATTGATGCCTTGGTTCGATCTGATGACATGGAAAGAGCATTTCATGTGTTTTCCTCCATGGGGAAGGCTGGTCTGGTGCCTGATGTCTACACCTATGGGGTCTTGATACATGGATTATGCATGAAAGGTAATATGATTGAAGCATCAAAGCTGTTACAATCAATGAGCGATTCACATTTAGAGCCAAGTGATGTCATATTTAATATAATGATTCATGGCTACTGCAAAGAGGGTAGCTCTTACAGGGCACTGAGGTTGCTCAAAGAAATGAGAAAGAAAGGAATGGTTCCGAATGTGGCTAGTTACAGTTCGACCATTGGAGTTCTTTGTAATGATGGGAAATGGGAAGAGGCTGAAATGCTACTTCAAGAAATGATGGAGTCAGATTTGAAACCATCAGTTTCTTTGTATAATATAATTTCTAGAGTGAAAAATGATACACTGGTGAAGTTATCAACCTAA

Protein Analysis

568

Amino Acids

63.45

Weight (kDa)

7.14

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 159 - 283 1.2e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 185 - 242 1.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 194 - 225 1e-12 PPR repeat
PPR_2 PF13041 197 - 246 3.9e-17 PPR repeat family
PPR PF01535 200 - 230 1.2e-09 PPR repeat
PPR_long PF17177 205 - 319 5.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 229 - 261 1.1e-07 PPR repeat
PPR_2 PF13041 233 - 281 1.4e-16 PPR repeat family
PPR PF01535 235 - 265 2.9e-06 PPR repeat
PPR_3 PF13812 256 - 312 1.2e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 263 - 296 2.4e-12 PPR repeat
PPR_2 PF13041 271 - 316 1.4e-17 PPR repeat family
PPR PF01535 271 - 299 2.7e-08 PPR repeat
TPR_24 PF23276 272 - 364 5.1e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 299 - 331 2.5e-12 PPR repeat
PPR_2 PF13041 303 - 350 1.2e-17 PPR repeat family
PPR PF01535 305 - 335 6e-08 PPR repeat
PPR_3 PF13812 327 - 384 7.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 333 - 365 2.1e-11 PPR repeat
PPR_2 PF13041 337 - 386 1.2e-15 PPR repeat family
PPR PF01535 340 - 369 5.1e-08 PPR repeat
PPR_long PF17177 355 - 479 5.4e-11 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 374 - 421 5.6e-13 PPR repeat family
PPR_3 PF13812 396 - 452 9.3e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 410 - 455 8.6e-15 PPR repeat family
PPR_3 PF13812 437 - 489 5.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 439 - 470 1.2e-09 PPR repeat
PPR_3 PF13812 465 - 524 5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 475 - 506 1.9e-08 PPR repeat
PPR_2 PF13041 477 - 526 4.2e-14 PPR repeat family
PPR PF01535 480 - 509 3.4e-08 PPR repeat
PPR_3 PF13812 500 - 555 1.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 508 - 540 3.5e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013053)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 512, 1131
AccB1I GGYRCC 1 cut(s) 1321
AccI GTMKAC 2 cut(s) 1235, 1332
AciI CCGC 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 1115
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 2 cut(s) 281, 1305
AflIII ACRYGT 1 cut(s) 313
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 6 cut(s) 20, 267, 682, 1093, 1396, 1482
AluI AGCT 6 cut(s) 20, 267, 682, 1093, 1396, 1482
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 4 cut(s) 237, 591, 1122, 1221
AoxI GGCC 2 cut(s) 373, 900
ApeKI GCWGC 1 cut(s) 522
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AseI ATTAAT 1 cut(s) 786
Asp700I GAANNNNTTC 1 cut(s) 872
AsuHPI GGTGA 6 cut(s) 55, 545, 650, 1135, 1201, 1702
BaeGI GKGCMC 1 cut(s) 1495
BaeI ACNNNNGTAYC 2 cut(s) 1674, 1707
BanI GGYRCC 1 cut(s) 1321
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 509
BciT130I CCWGG 1 cut(s) 259
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 4 cut(s) 237, 591, 1122, 1221
BfaI CTAG 3 cut(s) 1011, 1545, 1668
BisI GCNGC 1 cut(s) 523
BlsI GCNGC 1 cut(s) 524
Bme1390I CCNGG 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 1323, 1533
BmrFI CCNGG 1 cut(s) 259
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 2 cut(s) 1240, 1397
BmuI ACTGGG 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 1466, 1498
BpmI CTGGAG 1 cut(s) 1194
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 4 cut(s) 94, 257, 1254, 1302
BsaWI WCCGGW 1 cut(s) 197
BsaXI ACNNNNNCTCC 6 cut(s) 68, 98, 107, 131, 137, 161
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 1305
Bse1I ACTGG 2 cut(s) 172, 1692
Bse3DI GCAATG 1 cut(s) 913
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 4 cut(s) 94, 257, 1254, 1302
BseGI GGATG 4 cut(s) 209, 568, 924, 1003
BseLI CCNNNNNNNGG 2 cut(s) 281, 1305
BseMI GCAATG 1 cut(s) 913
BseMII CTCAG 2 cut(s) 338, 1487
BseNI ACTGG 2 cut(s) 172, 1692
BseRI GAGGAG 4 cut(s) 73, 139, 182, 227
BseSI GKGCMC 1 cut(s) 1495
BseXI GCAGC 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 375, 902
BshNI GGYRCC 1 cut(s) 1321
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 2 cut(s) 281, 1305
BsmAI GTCTC 4 cut(s) 237, 591, 1122, 1221
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 2 cut(s) 375, 902
Bso31I GGTCTC 1 cut(s) 591
Bsp1286I GDGCHC 2 cut(s) 269, 1495
Bsp143I GATC 3 cut(s) 386, 1087, 1262
Bsp19I CCATGG 1 cut(s) 1302
BspACI CCGC 1 cut(s) 53
BspANI GGCC 2 cut(s) 375, 902
BspCNI CTCAG 2 cut(s) 337, 1488
BspLI GGNNCC 2 cut(s) 1323, 1533
BspT107I GGYRCC 1 cut(s) 1321
BspTNI GGTCTC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 913
BsrI ACTGG 2 cut(s) 172, 1692
BssECI CCNNGG 4 cut(s) 94, 257, 1254, 1302
BssMI GATC 3 cut(s) 386, 1087, 1262
BssNAI GTATAC 1 cut(s) 1236
BssT1I CCWWGG 3 cut(s) 94, 1254, 1302
Bst1107I GTATAC 1 cut(s) 1236
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 715, 1553
Bst6I CTCTTC 2 cut(s) 986, 1587
BstC8I GCNNGC 4 cut(s) 53, 168, 339, 904
BstDEI CTNAG 2 cut(s) 324, 1496
BstDSI CCRYGG 1 cut(s) 1302
BstF5I GGATG 4 cut(s) 209, 568, 924, 1003
BstKTI GATC 3 cut(s) 389, 1090, 1265
BstMAI GTCTC 4 cut(s) 237, 591, 1122, 1221
BstMBI GATC 3 cut(s) 386, 1087, 1262
BstMCI CGRYCG 1 cut(s) 202
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 3 cut(s) 317, 808, 1216
BstSCI CCNGG 1 cut(s) 257
BstSLI GKGCMC 1 cut(s) 1495
BstV1I GCAGC 1 cut(s) 509
BstZ17I GTATAC 1 cut(s) 1236
BsuRI GGCC 2 cut(s) 375, 902
BtgI CCRYGG 1 cut(s) 1302
BtsCI GGATG 4 cut(s) 209, 568, 924, 1003
BtsIMutI CAGTG 3 cut(s) 56, 1493, 1685
Cac8I GCNNGC 4 cut(s) 53, 168, 339, 904
Csp6I GTAC 1 cut(s) 810
CviAII CATG 9 cut(s) 314, 805, 1213, 1273, 1289, 1303, 1355, 1366, 1460
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 2 cut(s) 324, 1496
DpnI GATC 3 cut(s) 388, 1089, 1264
DpnII GATC 3 cut(s) 386, 1087, 1262
DraI TTTAAA 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 986, 1587
EarI CTCTTC 2 cut(s) 986, 1587
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 3 cut(s) 94, 1254, 1302
Eco147I AGGCCT 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 591
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 1115
EcoICRI GAGCTC 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 3 cut(s) 94, 1254, 1302
EcoT22I ATGCAT 1 cut(s) 1367
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 3 cut(s) 94, 1254, 1302
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 9 cut(s) 317, 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
FaqI GGGAC 1 cut(s) 160
FatI CATG 9 cut(s) 313, 804, 1212, 1272, 1288, 1302, 1354, 1365, 1459
FauI CCCGC 1 cut(s) 60
FbaI TGATCA 1 cut(s) 1087
FblI GTMKAC 2 cut(s) 1235, 1332
Fnu4HI GCNGC 1 cut(s) 523
FokI GGATG 4 cut(s) 196, 575, 911, 1010
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 523
FspBI CTAG 3 cut(s) 1011, 1545, 1668
GluI GCNGC 1 cut(s) 523
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 2 cut(s) 375, 902
HapII CCGG 1 cut(s) 198
Hin1II CATG 9 cut(s) 317, 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
HinfI GANTC 5 cut(s) 204, 1141, 1415, 1456, 1625
HpaII CCGG 1 cut(s) 198
HphI GGTGA 6 cut(s) 55, 545, 650, 1135, 1201, 1702
Hpy166II GTNNAC 4 cut(s) 705, 1106, 1236, 1333
Hpy188I TCNGA 7 cut(s) 591, 747, 1035, 1140, 1267, 1536, 1630
Hpy188III TCNNGA 6 cut(s) 429, 736, 947, 1348, 1613, 1668
Hpy8I GTNNAC 4 cut(s) 705, 1106, 1236, 1333
HpyAV CCTTC 5 cut(s) 136, 436, 749, 1230, 1303
HpyCH4III ACNGT 2 cut(s) 715, 1553
HpyCH4IV ACGT 1 cut(s) 1232
HpyCH4V TGCA 6 cut(s) 166, 630, 840, 906, 1365, 1470
HpyF3I CTNAG 2 cut(s) 324, 1496
HpySE526I ACGT 1 cut(s) 1232
Hsp92II CATG 9 cut(s) 317, 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 3 cut(s) 386, 1087, 1262
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 1 cut(s) 509
LweI GCATC 2 cut(s) 1240, 1397
MaeI CTAG 3 cut(s) 1011, 1545, 1668
MaeII ACGT 1 cut(s) 1232
MaeIII GTNAC 7 cut(s) 3, 913, 1018, 1123, 1228, 1398, 1547
MalI GATC 3 cut(s) 388, 1089, 1264
MboI GATC 3 cut(s) 386, 1087, 1262
MboII GAAGA 8 cut(s) 125, 176, 211, 670, 787, 793, 1003, 1604
MfeI CAATTG 1 cut(s) 1239
MhlI GDGCHC 2 cut(s) 269, 1495
MluCI AATT 5 cut(s) 536, 930, 1239, 1245, 1662
MlyI GAGTC 1 cut(s) 1634
MmeI TCCRAC 3 cut(s) 460, 725, 1044
Mph1103I ATGCAT 1 cut(s) 1367
MroXI GAANNNNTTC 1 cut(s) 872
MseI TTAA 5 cut(s) 248, 423, 468, 786, 1446
MspA1I CMGCKG 1 cut(s) 1093
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 259
MunI CAATTG 1 cut(s) 1239
MvaI CCWGG 1 cut(s) 259
NcoI CCATGG 1 cut(s) 1302
NdeII GATC 3 cut(s) 386, 1087, 1262
NlaIII CATG 9 cut(s) 317, 808, 1216, 1276, 1292, 1306, 1358, 1369, 1463
NlaIV GGNNCC 2 cut(s) 1323, 1533
NmuCI GTSAC 4 cut(s) 3, 913, 1123, 1228
NsiI ATGCAT 1 cut(s) 1367
NspI RCATGY 3 cut(s) 317, 808, 1216
PceI AGGCCT 1 cut(s) 375
PciI ACATGT 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 872
PfeI GAWTC 4 cut(s) 204, 1141, 1415, 1456
PkrI GCNGC 1 cut(s) 524
PleI GAGTC 1 cut(s) 1633
PpsI GAGTC 1 cut(s) 1633
PscI ACATGT 1 cut(s) 313
PshBI ATTAAT 1 cut(s) 786
PsiI TTATAA 2 cut(s) 512, 1131
Psp124BI GAGCTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 2 cut(s) 1323, 1533
PvuII CAGCTG 1 cut(s) 1093
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 5 cut(s) 248, 423, 468, 786, 1446
SatI GCNGC 1 cut(s) 523
Sau3AI GATC 3 cut(s) 386, 1087, 1262
SchI GAGTC 1 cut(s) 1634
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 2 cut(s) 269, 1495
SfaNI GCATC 2 cut(s) 1240, 1397
Sse9I AATT 5 cut(s) 536, 930, 1239, 1245, 1662
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 1 cut(s) 53
SspMI CTAG 3 cut(s) 1011, 1545, 1668
SstI GAGCTC 1 cut(s) 269
StuI AGGCCT 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 3 cut(s) 94, 1254, 1302
TaaI ACNGT 2 cut(s) 715, 1553
TaiI ACGT 1 cut(s) 1235
TaqI TCGA 7 cut(s) 202, 428, 876, 946, 1100, 1261, 1556
TasI AATT 5 cut(s) 536, 930, 1239, 1245, 1662
TfiI GAWTC 4 cut(s) 204, 1141, 1415, 1456
Tru1I TTAA 5 cut(s) 248, 423, 468, 786, 1446
Tru9I TTAA 5 cut(s) 248, 423, 468, 786, 1446
TscAI CASTG 3 cut(s) 63, 1500, 1692
TseFI GTSAC 4 cut(s) 3, 913, 1123, 1228
TseI GCWGC 1 cut(s) 522
Tsp45I GTSAC 4 cut(s) 3, 913, 1123, 1228
TspDTI ATGAA 8 cut(s) 118, 794, 869, 894, 1004, 1277, 1382, 1448
TspRI CASTG 3 cut(s) 63, 1500, 1692
VspI ATTAAT 1 cut(s) 786
XbaI TCTAGA 1 cut(s) 1667
XceI RCATGY 3 cut(s) 317, 808, 1216
XmiI GTMKAC 2 cut(s) 1235, 1332
XmnI GAANNNNTTC 1 cut(s) 872
XspI CTAG 3 cut(s) 1011, 1545, 1668
Zsp2I ATGCAT 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.