Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013053

Physical Location & Seq

Genomic Coordinates Reverse (-)

5267535 .. 5270525

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G076800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGTCTCTAACGAACGAAGCTTTGCTACTCATTCAAAAAATGGTGAAGAGCCCGCCACTAAAAGCCTTCTCAATTTTCAACTCCTCCACTCTCCAAGGCTTCCAACACACCCACCAATCCATATCCTTCATTCTCCACCGCCTTCTCTCCTTCAACATGCCAACACACGCCCAGTCTCTCATTCTTCAAGTGCTCACTGGTCGACTTTCTTCCCCATTCTTCACTCCCTCCTCTCTCCTCCACCGTTTAACTCAACCCCATTTGAGCTCTAACCCTCTCTGTAGTCATCTGTTTGAAACTATCATCAATGCGCATGTTCAATCTCAGTTGCCAGAGCAAGCCCTTTACTTTTTGAAGCAGATGGTTGACCAGGGCCTCGTTCCCAGATCAAACACTTTTAATAATCTGTTGGGTTCTCTTGTTAAGTCAAAAGATTTTGGAAAAGCTTGGTGGGTTTTCAATGAGTTTAAGGGTAGGGTTGAGTTGGATGTGTATAGTTTTGGGATAATGATAAAAAGTTGCTGCGAAGCTGGTGATTTGGATAGAGGTTTCGAGCTTTTGGTTCAATTGGAGGAAATGGTTCTGTCTCCGAATGTTGTTATATACTCTACTTTGATTGATGGGTGTTGCAAGAATGGTGACTTAGAGAGGGCAAAGAAGATATTTGGTAAAATGGAGGAGCTTGGTTTGGTTGCTAACCAGTATACATATACTTCGTTGATTGATGGGCTTTTCAAGAAAGGCCATAAAAAAGATGGGTTTGAGCTCTATGACAAAATGAAAAGTAATGGGGTTGTTCCTAACGTATGCACTTATAATTGTTTGATCAATGAGTGTTGCAATGATGGGAAAATGAGCAGAGCTTTGGAACTGTTCGATGAAATGCGTGAGAGAGGAGTGGCCTGCAATGTTGTAGCATACAACACCGTAATTTGCGGATTGTGCAGGGAAATCAGGATGTGGGAAGCTGAGAAGTTTTTTAATCAGATGATAAGGGAAGGTATTAGTCCAAACACAGTTACTTTTAACACACTAATTGATGGGTTTTGTAACCTAGGAAAGTTGGACAAGGCTTTGAGTTTATTTGATCAGTTAAAGTCAAATGGACAATCACCATCTTTGGTGACTTATAATGTTTTGATTCAAGGCTTTGCTAGAGCCCAAAATTCTGCAGGAGTTGCTGATTTAGTGAGAGAGATGAACGACAGAGGTGTTTCTCCTTCTAAAGTGACATATACAATTTTAATCGATGCCTTAGTTCGATCTGGTGACATGGAAAGAGCATTTCAGATATTCTTTTCTATGGAGAAGGCCGGTATGGTGCCCGATACTCACACCTATGGTGTCTTAATCCATGGATTATGCATGAAAGGCGATATGAAGGAAGCATCGAAGCTCTTCAAATCAATAAGTGACACTCATTTGGAGCCAAATGATGTCATATATAATATGATGATTCATGGTTACTGCAAAGAGGGTAGCTCTTACAGGGCACTGAGGTTGCTCAAAGAAATGAGAAAGAATCGAATGATTCCAAATGTGGCTAGCTACAGTTCCACCATTGGAGTGCTTTGTAATGATGGGAAGTGGGAGGAGGCTGAGTTTCTGCTTAAAGAGATGATAGAGTCAGATTTAAGACCATCAGTTTCTTTGTTAACATACTTTCTAAAGCGAAAGGTAATAGTACTGGTGAAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1900864 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

567

Amino Acids

63.84

Weight (kDa)

8.22

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11690 AT4G11690
fragaria_vesca	FvH4_3g36170
malus_domestica	MD03G1092900.v1.1
prunus_persica	Prupe.6G076800_v2.0.a1
pyrus_communis	pycom03g07420
rosa_chinensis	RchiOBHm_Chr5g0064671 RchiOBHm_Chr5g0064911
rosa_laevigata	RLG00000035740 RLG00000035742
rosa_multiflora	Rmu_sc0020903.1_g000003 Rmu_sc0025431.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016400
rosa_rugosa	Rorug05G0366600
rosa_samantha	Rh5AG425100 Rh5CG462600 Rh5DG453100
rosa_wichuraiana	Rw5G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	816, 1131
Acc16I	TGCGCA	1 cut(s)	312
AccB1I	GGYRCC	1 cut(s)	1321
AccI	GTMKAC	2 cut(s)	202, 704
AciI	CCGC	3 cut(s)	53, 139, 936
AcsI	RAATTY	1 cut(s)	1165
AfaI	GTAC	1 cut(s)	1686
AjnI	CCWGG	1 cut(s)	369
Alw21I	GWGCWC	3 cut(s)	195, 269, 768
Alw26I	GTCTC	3 cut(s)	9, 180, 591
AoxI	GGCC	4 cut(s)	373, 742, 900, 1311
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	1 cut(s)	1165
Asp700I	GAANNNNTTC	2 cut(s)	579, 1397
AspA2I	CCTAGG	1 cut(s)	1054
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	6 cut(s)	55, 545, 650, 1104, 1135, 1280
AsuNHI	GCTAGC	1 cut(s)	1544
AvrII	CCTAGG	1 cut(s)	1054
BaeGI	GKGCMC	2 cut(s)	1326, 1495
BanI	GGYRCC	1 cut(s)	1321
BanII	GRGCYC	4 cut(s)	53, 269, 768, 1162
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
Bbv12I	GWGCWC	3 cut(s)	195, 269, 768
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	9 cut(s)	355, 614, 719, 749, 839, 1034, 1123, 1574, 1648
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	2 cut(s)	825, 1087
BcoDI	GTCTC	3 cut(s)	9, 180, 591
BfaI	CTAG	3 cut(s)	1055, 1155, 1545
BfmI	CTRYAG	3 cut(s)	280, 1170, 1549
BisI	GCNGC	1 cut(s)	523
BlnI	CCTAGG	1 cut(s)	1054
BlsI	GCNGC	1 cut(s)	524
BmcAI	AGTACT	1 cut(s)	1686
Bme1390I	CCNGG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	2 cut(s)	1323, 1428
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	1240, 1397
BmtI	GCTAGC	1 cut(s)	1548
BmuI	ACTGGG	1 cut(s)	166
BplI	GAGNNNNNCTC	2 cut(s)	1466, 1498
Bsa29I	ATCGAT	1 cut(s)	1248
BsaJI	CCNNGG	4 cut(s)	94, 370, 1054, 1354
BsaXI	ACNNNNNCTCC	2 cut(s)	1586, 1616
Bse118I	RCCGGY	1 cut(s)	1313
Bse1I	ACTGG	4 cut(s)	172, 202, 700, 1692
Bse3DI	GCAATG	2 cut(s)	847, 913
BseBI	CCWGG	1 cut(s)	371
BseCI	ATCGAT	1 cut(s)	1248
BseDI	CCNNGG	4 cut(s)	94, 370, 1054, 1354
BseGI	GGATG	2 cut(s)	493, 963
BseMI	GCAATG	2 cut(s)	847, 913
BseMII	CTCAG	4 cut(s)	338, 960, 1487, 1590
BseNI	ACTGG	4 cut(s)	172, 202, 700, 1692
BseRI	GAGGAG	6 cut(s)	73, 220, 227, 692, 909, 1607
BseSI	GKGCMC	2 cut(s)	1326, 1495
BseXI	GCAGC	1 cut(s)	509
BsgI	GTGCAG	1 cut(s)	964
BshFI	GGCC	4 cut(s)	375, 744, 902, 1313
BshNI	GGYRCC	1 cut(s)	1321
BshVI	ATCGAT	1 cut(s)	1248
BsiHKAI	GWGCWC	3 cut(s)	195, 269, 768
BsiSI	CCGG	1 cut(s)	1314
BsmAI	GTCTC	3 cut(s)	9, 180, 591
BsnI	GGCC	4 cut(s)	375, 744, 902, 1313
Bsp1286I	GDGCHC	7 cut(s)	53, 195, 269, 768, 1162, 1326, 1495
Bsp143I	GATC	4 cut(s)	386, 825, 1087, 1262
Bsp19I	CCATGG	1 cut(s)	1354
BspACI	CCGC	3 cut(s)	53, 139, 936
BspANI	GGCC	4 cut(s)	375, 744, 902, 1313
BspCNI	CTCAG	4 cut(s)	337, 961, 1488, 1591
BspDI	ATCGAT	1 cut(s)	1248
BspLI	GGNNCC	2 cut(s)	1323, 1428
BspMAI	CTGCAG	1 cut(s)	1174
BspOI	GCTAGC	1 cut(s)	1548
BspQI	GCTCTTC	2 cut(s)	41, 1403
BspT107I	GGYRCC	1 cut(s)	1321
BsrDI	GCAATG	2 cut(s)	847, 913
BsrFI	RCCGGY	1 cut(s)	1313
BsrI	ACTGG	4 cut(s)	172, 202, 700, 1692
BssAI	RCCGGY	1 cut(s)	1313
BssECI	CCNNGG	4 cut(s)	94, 370, 1054, 1354
BssMI	GATC	4 cut(s)	386, 825, 1087, 1262
BssNAI	GTATAC	1 cut(s)	705
BssT1I	CCWWGG	3 cut(s)	94, 1054, 1354
Bst1107I	GTATAC	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	5 cut(s)	245, 873, 928, 1018, 1553
Bst6I	CTCTTC	2 cut(s)	41, 1403
BstAPI	GCANNNNNTGC	1 cut(s)	1178
BstC8I	GCNNGC	4 cut(s)	53, 339, 904, 1546
BstDEI	CTNAG	6 cut(s)	324, 643, 969, 1255, 1496, 1599
BstDSI	CCRYGG	1 cut(s)	1354
BstF5I	GGATG	2 cut(s)	493, 963
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	4 cut(s)	389, 828, 1090, 1265
BstMAI	GTCTC	3 cut(s)	9, 180, 591
BstMBI	GATC	4 cut(s)	386, 825, 1087, 1262
BstMWI	GCNNNNNNNGC	3 cut(s)	942, 1178, 1371
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	2 cut(s)	160, 317
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	3 cut(s)	280, 1170, 1549
BstSLI	GKGCMC	2 cut(s)	1326, 1495
BstV1I	GCAGC	1 cut(s)	509
BstZ17I	GTATAC	1 cut(s)	705
Bsu15I	ATCGAT	1 cut(s)	1248
BsuRI	GGCC	4 cut(s)	375, 744, 902, 1313
BsuTUI	ATCGAT	1 cut(s)	1248
BtgI	CCRYGG	1 cut(s)	1354
BtsCI	GGATG	2 cut(s)	493, 963
BtsIMutI	CAGTG	2 cut(s)	195, 1493
Cac8I	GCNNGC	4 cut(s)	53, 339, 904, 1546
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	1313
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	1248
Csp6I	GTAC	1 cut(s)	1685
CviAII	CATG	6 cut(s)	157, 314, 1273, 1355, 1366, 1460
CviQI	GTAC	1 cut(s)	1685
DdeI	CTNAG	6 cut(s)	324, 643, 969, 1255, 1496, 1599
DpnI	GATC	4 cut(s)	388, 827, 1089, 1264
DpnII	GATC	4 cut(s)	386, 825, 1087, 1262
Eam1104I	CTCTTC	2 cut(s)	41, 1403
EarI	CTCTTC	2 cut(s)	41, 1403
Ecl136II	GAGCTC	2 cut(s)	267, 766
Eco130I	CCWWGG	3 cut(s)	94, 1054, 1354
Eco24I	GRGCYC	4 cut(s)	53, 269, 768, 1162
Eco53kI	GAGCTC	2 cut(s)	267, 766
EcoICRI	GAGCTC	2 cut(s)	267, 766
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	3 cut(s)	94, 1054, 1354
EcoT22I	ATGCAT	1 cut(s)	1367
EcoT38I	GRGCYC	4 cut(s)	53, 269, 768, 1162
ErhI	CCWWGG	3 cut(s)	94, 1054, 1354
FaeI	CATG	6 cut(s)	160, 317, 1276, 1358, 1369, 1463
FatI	CATG	6 cut(s)	156, 313, 1272, 1354, 1365, 1459
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	2 cut(s)	825, 1087
FblI	GTMKAC	2 cut(s)	202, 704
Fnu4HI	GCNGC	1 cut(s)	523
FokI	GGATG	2 cut(s)	500, 970
FriOI	GRGCYC	4 cut(s)	53, 269, 768, 1162
Fsp4HI	GCNGC	1 cut(s)	523
FspAI	RTGCGCAY	1 cut(s)	312
FspBI	CTAG	3 cut(s)	1055, 1155, 1545
FspI	TGCGCA	1 cut(s)	312
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	523
HaeIII	GGCC	4 cut(s)	375, 744, 902, 1313
HapII	CCGG	1 cut(s)	1314
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	6 cut(s)	160, 317, 1276, 1358, 1369, 1463
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	3 cut(s)	203, 367, 1656
HindII	GTYRAC	3 cut(s)	203, 367, 1656
HindIII	AAGCTT	2 cut(s)	18, 444
HinfI	GANTC	5 cut(s)	1141, 1456, 1522, 1531, 1625
HpaI	GTTAAC	1 cut(s)	1656
HpaII	CCGG	1 cut(s)	1314
HphI	GGTGA	6 cut(s)	55, 545, 650, 1104, 1135, 1280
Hpy166II	GTNNAC	4 cut(s)	203, 367, 705, 1656
Hpy188I	TCNGA	4 cut(s)	591, 987, 1290, 1630
Hpy188III	TCNNGA	2 cut(s)	736, 955
Hpy8I	GTNNAC	4 cut(s)	203, 367, 705, 1656
HpyAV	CCTTC	8 cut(s)	76, 136, 152, 160, 992, 1230, 1303, 1375
HpyCH4III	ACNGT	5 cut(s)	245, 873, 928, 1018, 1553
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	8 cut(s)	630, 810, 840, 906, 945, 1172, 1365, 1470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	942, 1178, 1371
HpyF3I	CTNAG	6 cut(s)	324, 643, 969, 1255, 1496, 1599
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	6 cut(s)	160, 317, 1276, 1358, 1369, 1463
HspAI	GCGC	1 cut(s)	311
Ksp22I	TGATCA	2 cut(s)	825, 1087
KspAI	GTTAAC	1 cut(s)	1656
Kzo9I	GATC	4 cut(s)	386, 825, 1087, 1262
LguI	GCTCTTC	2 cut(s)	41, 1403
LmnI	GCTCC	2 cut(s)	679, 1426
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	2 cut(s)	1240, 1397
MaeI	CTAG	3 cut(s)	1055, 1155, 1545
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	8 cut(s)	638, 1018, 1049, 1123, 1228, 1268, 1412, 1463
MalI	GATC	4 cut(s)	388, 827, 1089, 1264
MboI	GATC	4 cut(s)	386, 825, 1087, 1262
MboII	GAAGA	6 cut(s)	58, 176, 201, 211, 670, 1390
MfeI	CAATTG	1 cut(s)	566
MhlI	GDGCHC	7 cut(s)	53, 195, 269, 768, 1162, 1326, 1495
MluCI	AATT	7 cut(s)	72, 566, 817, 930, 1035, 1165, 1239
MlyI	GAGTC	1 cut(s)	1634
MmeI	TCCRAC	3 cut(s)	127, 465, 1044
Mph1103I	ATGCAT	1 cut(s)	1367
MroXI	GAANNNNTTC	2 cut(s)	579, 1397
MslI	CAYNNNNRTG	2 cut(s)	1338, 1565
MspI	CCGG	1 cut(s)	1314
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	566
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	942, 1178, 1371
NcoI	CCATGG	1 cut(s)	1354
NdeII	GATC	4 cut(s)	386, 825, 1087, 1262
NheI	GCTAGC	1 cut(s)	1544
NlaIII	CATG	6 cut(s)	160, 317, 1276, 1358, 1369, 1463
NlaIV	GGNNCC	2 cut(s)	1323, 1428
NmuCI	GTSAC	5 cut(s)	638, 1123, 1228, 1268, 1412
NsbI	TGCGCA	1 cut(s)	312
NsiI	ATGCAT	1 cut(s)	1367
NspI	RCATGY	2 cut(s)	160, 317
PciSI	GCTCTTC	2 cut(s)	41, 1403
PdmI	GAANNNNTTC	2 cut(s)	579, 1397
PfeI	GAWTC	4 cut(s)	1141, 1456, 1522, 1531
PkrI	GCNGC	1 cut(s)	524
PleI	GAGTC	1 cut(s)	1633
PpsI	GAGTC	1 cut(s)	1633
PsiI	TTATAA	2 cut(s)	816, 1131
Psp124BI	GAGCTC	2 cut(s)	269, 768
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	1323, 1428
PspPI	GGNCC	1 cut(s)	373
PstI	CTGCAG	1 cut(s)	1174
RsaI	GTAC	1 cut(s)	1686
RsaNI	GTAC	1 cut(s)	1685
RseI	CAYNNNNRTG	2 cut(s)	1338, 1565
SacI	GAGCTC	2 cut(s)	269, 768
SalI	GTCGAC	1 cut(s)	201
SapI	GCTCTTC	2 cut(s)	41, 1403
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	4 cut(s)	386, 825, 1087, 1262
Sau96I	GGNCC	1 cut(s)	373
ScaI	AGTACT	1 cut(s)	1686
SchI	GAGTC	1 cut(s)	1634
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	7 cut(s)	53, 195, 269, 768, 1162, 1326, 1495
SfaNI	GCATC	2 cut(s)	1240, 1397
SfcI	CTRYAG	3 cut(s)	280, 1170, 1549
SmiMI	CAYNNNNRTG	2 cut(s)	1338, 1565
Sse9I	AATT	7 cut(s)	72, 566, 817, 930, 1035, 1165, 1239
SsiI	CCGC	3 cut(s)	53, 139, 936
SspMI	CTAG	3 cut(s)	1055, 1155, 1545
SstI	GAGCTC	2 cut(s)	269, 768
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	3 cut(s)	94, 1054, 1354
TaaI	ACNGT	5 cut(s)	245, 873, 928, 1018, 1553
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	7 cut(s)	202, 552, 876, 1248, 1261, 1391, 1525
TasI	AATT	7 cut(s)	72, 566, 817, 930, 1035, 1165, 1239
TatI	WGTACW	1 cut(s)	1684
TfiI	GAWTC	4 cut(s)	1141, 1456, 1522, 1531
TscAI	CASTG	2 cut(s)	202, 1500
TseFI	GTSAC	5 cut(s)	638, 1123, 1228, 1268, 1412
TseI	GCWGC	1 cut(s)	522
Tsp45I	GTSAC	5 cut(s)	638, 1123, 1228, 1268, 1412
TspDTI	ATGAA	7 cut(s)	118, 794, 894, 1214, 1382, 1394, 1448
TspRI	CASTG	2 cut(s)	202, 1500
XapI	RAATTY	1 cut(s)	1165
XceI	RCATGY	2 cut(s)	160, 317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmaJI	CCTAGG	1 cut(s)	1054
XmiI	GTMKAC	2 cut(s)	202, 704
XmnI	GAANNNNTTC	2 cut(s)	579, 1397
XspI	CTAG	3 cut(s)	1055, 1155, 1545
ZrmI	AGTACT	1 cut(s)	1686
Zsp2I	ATGCAT	1 cut(s)	1367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.