AT4G11860

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007133
Physical Location & Seq
Reverse (-)
7133896 .. 7138510
4615 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11860.1

Sequence Viewer

Length: 2049 bp
ATGGCGACCGCTTCATCTTCAGAATCTCCGAGCGAAGAAACGCAGACGAATCAAGAAGCGATGCAGCAGCAAGATTTACCGAAGGAAACTACTACGGAGGAGGAGATTTTGTATAAGACGAAATCGATTCAGTTCCTTGGAAGAACCACACCTATCATTCTCCAGAACGAAAATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTGCTTCTCTTGAGAAACAACTTGAATCTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGACTCATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAACAGAACATTGCTGATGCAATTGATCTTCTTCCACGCCTTACTACTGGAATTGATGTCAATATTAAATTCAGGAGGATTGATGATTTTGAGTTCACACCTGAATGTGCAATATTTGATTTACTTGACATTCCCTTATATCATGGATGGATAGTTGATCCTCAGGATGTTGAAGCAGCTAATGCAATTGGTAGCAAATCGTATAATGCTCTTATGGGTGAGCTAGTTGCACTGGAGACACAGAATGTAGAGGCTCAAGGCGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCAACTACTGCAGTTTTAGGGGTTCCTTCACCTTGTCTTTCGAAAACAAGATCTTTTGATGATTCTCCACCTGCGGCTGCAGAGCTTCGTAGAATGAGAAAGGGGGATCTTGAAGAAGAAACAGAGTTGTTGCAAGCCTTGCAGTTATCACAGGGGCAGGGGAATGATCCAACTCCAAACACTAACGGAGACTCAACCAATCAAGATTCTGCGTTCACATTTTCAGATGCGAGTCCAACTAGCACCCATATTACTAATATCAGTCAGCTAGACCAGTTCAAAACTGATGATGATAAAGCATCAGAAAATGATGGGAATATGATCAAAGTTGGGAAATTTCCGACAACGATTACAACTAAAAGTGAGGATCTTAACCATGATCAATTATCTTCTAAGCAATCTGGAGGTGAAACGGCTTGTGATGTTGAGAACGTGAGTAGCAGCAAAGAGGCCATTGTCGATGTAACTTCTTCTGAGGCACTCTCTGTGGATAAGGGTAATCTGGAGTCAGCGAAAAGTGAAAGCAGTTCTGAGAGTGTACTCAAGTCTGATGCAGCTTCTATTGATCCAGATTTGAGTTGCAGATCCCAGCATGATGATGCACCCAACGCTTTTATCCCACCTGTATCTACCGATGAACCTATGTACGAAGGTGAGGAATGTGTAAACACAGTGCCTCCAGTTTGTGCAGACAAAGAACCCGTTTATGAAGGTGAGTCACTTCTTGGTAAAAGGGTTGAGAAGGATGTTGGTGATTGTTCTTCTGAAGGGAGGGCTACGGATGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCAATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTCAAAGAACGTGAACTCTGTGTTTTTTTCCGGAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTTGGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGTTAATGGTGACACTGCATTCATGACTGCTACCTTCAAGGACTTCACGATCGACAGCAGCACAGGTGGTGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCTTGCCAGCATCAACAATGTAGCGGATGCAGGCATAGATGTCAATTCTGATCTGCAACTAGCAATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGTAACCCAACTCCACAACCAACTAGCGTTGCTGCCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCACAGGCCATCATCAGCTGCGTCTTCGAGACACGACGGCAAATCCCCTAAAGATAAAGATAGCAAATGTAGAATCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MINDY_DUB

Protein Analysis

682

Amino Acids

74.43

Weight (kDa)

4.34

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MINDY_DUB PF04424 38 - 568 2.2e-94 MINDY deubiquitinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 727
Acc36I ACCTGC 1 cut(s) 727
Acc65I GGTACC 1 cut(s) 1954
AccB1I GGYRCC 1 cut(s) 1954
AccI GTMKAC 1 cut(s) 285
AccIII TCCGGA 1 cut(s) 1557
AciI CCGC 4 cut(s) 9, 647, 722, 1811
AclWI GGATC 6 cut(s) 500, 762, 809, 1023, 1208, 1227
AcsI RAATTY 2 cut(s) 416, 983
AcuI CTGAAG 1 cut(s) 1434
AfaI GTAC 3 cut(s) 1188, 1295, 1956
AgsI TTSAA 6 cut(s) 229, 521, 761, 928, 1585, 1705
AluBI AGCT 7 cut(s) 527, 571, 733, 916, 1205, 1856, 1985
AluI AGCT 7 cut(s) 527, 571, 733, 916, 1205, 1856, 1985
Alw26I GTCTC 3 cut(s) 578, 831, 1990
AlwI GGATC 6 cut(s) 500, 762, 809, 1023, 1208, 1227
Aor13HI TCCGGA 1 cut(s) 1557
AoxI GGCC 3 cut(s) 1098, 1525, 1973
ApoI RAATTY 2 cut(s) 416, 983
Asp718I GGTACC 1 cut(s) 1954
AspS9I GGNCC 3 cut(s) 176, 1879, 1946
AsuC2I CCSGG 1 cut(s) 621
AsuHPI GGTGA 9 cut(s) 578, 669, 1067, 1313, 1373, 1412, 1463, 1607, 1688
AsuII TTCGAA 1 cut(s) 689
AvaII GGWCC 3 cut(s) 176, 1879, 1946
AxyI CCTNAGG 1 cut(s) 510
BanI GGYRCC 1 cut(s) 1954
BanII GRGCYC 2 cut(s) 1437, 1889
BauI CACGAG 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 1983
BccI CCATC 4 cut(s) 489, 953, 1424, 1984
BceAI ACGGC 2 cut(s) 1077, 2020
BclI TGATCA 2 cut(s) 969, 1027
BcnI CCSGG 1 cut(s) 621
BcoDI GTCTC 3 cut(s) 578, 831, 1990
BfaI CTAG 5 cut(s) 572, 888, 917, 1847, 1917
BfmI CTRYAG 3 cut(s) 657, 726, 1614
BfuAI ACCTGC 1 cut(s) 727
BglII AGATCT 1 cut(s) 698
Bme1390I CCNGG 1 cut(s) 621
Bme18I GGWCC 3 cut(s) 176, 1879, 1946
BmgT120I GGNCC 3 cut(s) 176, 1879, 1946
BmiI GGNNCC 2 cut(s) 672, 1956
BmrFI CCNGG 1 cut(s) 621
BmsI GCATC 8 cut(s) 51, 355, 865, 956, 1189, 1237, 1804, 1806
BpiI GAAGAC 1 cut(s) 1983
BplI GAGNNNNNCTC 2 cut(s) 1115, 1147
BpmI CTGGAG 5 cut(s) 146, 602, 1071, 1172, 1311
Bpu14I TTCGAA 1 cut(s) 689
BpuEI CTTGAG 4 cut(s) 235, 243, 588, 1175
BpuMI CCSGG 1 cut(s) 621
Bsa29I ATCGAT 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 1892
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 2 cut(s) 136, 1958
BsaWI WCCGGW 1 cut(s) 1557
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 1309, 1339
Bse1I ACTGG 5 cut(s) 400, 585, 922, 1328, 1948
Bse21I CCTNAGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 615
BseAI TCCGGA 1 cut(s) 1557
BseCI ATCGAT 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 136, 1958
BseGI GGATG 6 cut(s) 500, 520, 1399, 1435, 1759, 1819
BseJI GATNNNNATC 1 cut(s) 615
BseMI GCAATG 1 cut(s) 357
BseMII CTCAG 3 cut(s) 524, 1113, 1170
BseNI ACTGG 5 cut(s) 400, 585, 922, 1328, 1948
BseRI GAGGAG 2 cut(s) 113, 116
BseYI CCCAGC 1 cut(s) 1236
BsgI GTGCAG 2 cut(s) 1356, 1558
Bsh1285I CGRYCG 2 cut(s) 9, 1719
BshFI GGCC 3 cut(s) 1100, 1527, 1975
BshNI GGYRCC 1 cut(s) 1954
BshVI ATCGAT 1 cut(s) 125
BsiEI CGRYCG 2 cut(s) 9, 1719
BsiSI CCGG 2 cut(s) 621, 1558
BslFI GGGAC 1 cut(s) 259
BsmAI GTCTC 3 cut(s) 578, 831, 1990
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 1685
BsnI GGCC 3 cut(s) 1100, 1527, 1975
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 2 cut(s) 1437, 1889
Bsp13I TCCGGA 1 cut(s) 1557
BspACI CCGC 4 cut(s) 9, 647, 722, 1811
BspANI GGCC 3 cut(s) 1100, 1527, 1975
BspCNI CTCAG 3 cut(s) 523, 1114, 1171
BspDI ATCGAT 1 cut(s) 125
BspEI TCCGGA 1 cut(s) 1557
BspHI TCATGA 1 cut(s) 1689
BspLI GGNNCC 2 cut(s) 672, 1956
BspMAI CTGCAG 2 cut(s) 661, 730
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 6 cut(s) 500, 762, 809, 1023, 1208, 1227
BspT104I TTCGAA 1 cut(s) 689
BspT107I GGYRCC 1 cut(s) 1954
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 5 cut(s) 400, 585, 922, 1328, 1948
BssECI CCNNGG 2 cut(s) 136, 1958
BssSI CACGAG 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 136, 1958
Bst2BI CACGAG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 245, 1321
BstAPI GCANNNNNTGC 3 cut(s) 530, 656, 787
BstBAI YACGTR 1 cut(s) 1892
BstBI TTCGAA 1 cut(s) 689
BstC8I GCNNGC 4 cut(s) 783, 1517, 1795, 1819
BstDEI CTNAG 4 cut(s) 510, 1041, 1122, 1179
BstEII GGTNACC 1 cut(s) 1625
BstF5I GGATG 6 cut(s) 500, 520, 1399, 1435, 1759, 1819
BstMAI GTCTC 3 cut(s) 578, 831, 1990
BstMCI CGRYCG 2 cut(s) 9, 1719
BstMWI GCNNNNNNNGC 4 cut(s) 530, 656, 787, 1256
BstPI GGTNACC 1 cut(s) 1625
BstSCI CCNGG 1 cut(s) 619
BstSFI CTRYAG 3 cut(s) 657, 726, 1614
BstV2I GAAGAC 1 cut(s) 1983
BstX2I RGATCY 4 cut(s) 698, 754, 1015, 1232
BstYI RGATCY 4 cut(s) 698, 754, 1015, 1232
Bsu15I ATCGAT 1 cut(s) 125
Bsu36I CCTNAGG 1 cut(s) 510
BsuRI GGCC 3 cut(s) 1100, 1527, 1975
BsuTUI ATCGAT 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 74
BtsCI GGATG 6 cut(s) 500, 520, 1399, 1435, 1759, 1819
BtsI GCAGTG 1 cut(s) 1680
BtsIMutI CAGTG 4 cut(s) 578, 1326, 1680, 1941
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 4 cut(s) 783, 1517, 1795, 1819
CciI TCATGA 1 cut(s) 1689
Cfr13I GGNCC 3 cut(s) 176, 1879, 1946
ClaI ATCGAT 1 cut(s) 125
CseI GACGC 1 cut(s) 1977
Csp6I GTAC 3 cut(s) 1187, 1294, 1955
CviAII CATG 7 cut(s) 491, 1025, 1241, 1579, 1690, 1749, 2044
CviQI GTAC 3 cut(s) 1187, 1294, 1955
DdeI CTNAG 4 cut(s) 510, 1041, 1122, 1179
Eco130I CCWWGG 2 cut(s) 136, 1958
Eco147I AGGCCT 1 cut(s) 1527
Eco24I GRGCYC 2 cut(s) 1437, 1889
Eco47I GGWCC 3 cut(s) 176, 1879, 1946
Eco57I CTGAAG 1 cut(s) 1434
Eco81I CCTNAGG 1 cut(s) 510
Eco91I GGTNACC 1 cut(s) 1625
EcoO65I GGTNACC 1 cut(s) 1625
EcoT14I CCWWGG 2 cut(s) 136, 1958
EcoT38I GRGCYC 2 cut(s) 1437, 1889
ErhI CCWWGG 2 cut(s) 136, 1958
FaeI CATG 7 cut(s) 494, 1028, 1244, 1582, 1693, 1752, 2047
FalI AAGNNNNNCTT 2 cut(s) 1584, 1616
FaqI GGGAC 1 cut(s) 259
FatI CATG 7 cut(s) 490, 1024, 1240, 1578, 1689, 1748, 2043
FbaI TGATCA 2 cut(s) 969, 1027
FblI GTMKAC 1 cut(s) 285
FokI GGATG 6 cut(s) 507, 527, 1406, 1442, 1766, 1826
FriOI GRGCYC 2 cut(s) 1437, 1889
FspBI CTAG 5 cut(s) 572, 888, 917, 1847, 1917
GsaI CCCAGC 1 cut(s) 1240
GsuI CTGGAG 5 cut(s) 146, 602, 1071, 1172, 1311
HaeIII GGCC 3 cut(s) 1100, 1527, 1975
HapII CCGG 2 cut(s) 621, 1558
HgaI GACGC 1 cut(s) 1977
Hin1II CATG 7 cut(s) 494, 1028, 1244, 1582, 1693, 1752, 2047
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HpaII CCGG 2 cut(s) 621, 1558
HphI GGTGA 9 cut(s) 578, 669, 1067, 1313, 1373, 1412, 1463, 1607, 1688
Hpy99I CGWCG 1 cut(s) 2006
HpyCH4III ACNGT 2 cut(s) 245, 1321
HpyCH4IV ACGT 3 cut(s) 1080, 1537, 1891
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 656, 787, 1256
HpyF3I CTNAG 4 cut(s) 510, 1041, 1122, 1179
HpySE526I ACGT 3 cut(s) 1080, 1537, 1891
Hsp92II CATG 7 cut(s) 494, 1028, 1244, 1582, 1693, 1752, 2047
Kpn2I TCCGGA 1 cut(s) 1557
KpnI GGTACC 1 cut(s) 1958
Ksp22I TGATCA 2 cut(s) 969, 1027
LmnI GCTCC 1 cut(s) 1962
LweI GCATC 8 cut(s) 51, 355, 865, 956, 1189, 1237, 1804, 1806
MaeI CTAG 5 cut(s) 572, 888, 917, 1847, 1917
MaeII ACGT 3 cut(s) 1080, 1537, 1891
MaeIII GTNAC 7 cut(s) 1111, 1365, 1625, 1676, 1768, 1895, 1939
MfeI CAATTG 2 cut(s) 369, 534
MflI RGATCY 4 cut(s) 698, 754, 1015, 1232
MhlI GDGCHC 2 cut(s) 1437, 1889
MluCI AATT 8 cut(s) 369, 399, 416, 534, 983, 1031, 1490, 1831
MlyI GAGTC 6 cut(s) 285, 833, 889, 1163, 1373, 1500
MmeI TCCRAC 3 cut(s) 842, 908, 1013
MroI TCCGGA 1 cut(s) 1557
MseI TTAA 4 cut(s) 414, 1020, 1493, 1671
MslI CAYNNNNRTG 2 cut(s) 451, 1245
MspA1I CMGCKG 1 cut(s) 1985
MspI CCGG 2 cut(s) 621, 1558
MspR9I CCNGG 1 cut(s) 621
MunI CAATTG 2 cut(s) 369, 534
Mva1269I GAATGC 1 cut(s) 1685
MwoI GCNNNNNNNGC 4 cut(s) 530, 656, 787, 1256
NciI CCSGG 1 cut(s) 621
NlaIII CATG 7 cut(s) 494, 1028, 1244, 1582, 1693, 1752, 2047
NlaIV GGNNCC 2 cut(s) 672, 1956
NmuCI GTSAC 4 cut(s) 1365, 1676, 1768, 1939
NspV TTCGAA 1 cut(s) 689
PagI TCATGA 1 cut(s) 1689
PaqCI CACCTGC 1 cut(s) 727
PceI AGGCCT 1 cut(s) 1527
PctI GAATGC 1 cut(s) 1685
PflFI GACNNNGTC 1 cut(s) 180
PfoI TCCNGGA 1 cut(s) 619
Ple19I CGATCG 1 cut(s) 1719
PleI GAGTC 6 cut(s) 285, 833, 888, 1162, 1372, 1500
PpsI GAGTC 6 cut(s) 285, 833, 888, 1162, 1372, 1500
Ppu21I YACGTR 1 cut(s) 1892
PspEI GGTNACC 1 cut(s) 1625
PspFI CCCAGC 1 cut(s) 1236
PspN4I GGNNCC 2 cut(s) 672, 1956
PspPI GGNCC 3 cut(s) 176, 1879, 1946
PstI CTGCAG 2 cut(s) 661, 730
PsuI RGATCY 4 cut(s) 698, 754, 1015, 1232
PsyI GACNNNGTC 1 cut(s) 180
PvuI CGATCG 1 cut(s) 1719
PvuII CAGCTG 1 cut(s) 1985
RsaI GTAC 3 cut(s) 1188, 1295, 1956
RsaNI GTAC 3 cut(s) 1187, 1294, 1955
RseI CAYNNNNRTG 2 cut(s) 451, 1245
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 4 cut(s) 414, 1020, 1493, 1671
Sau96I GGNCC 3 cut(s) 176, 1879, 1946
SchI GAGTC 6 cut(s) 285, 833, 889, 1163, 1373, 1500
ScrFI CCNGG 1 cut(s) 621
SduI GDGCHC 2 cut(s) 1437, 1889
SfaNI GCATC 8 cut(s) 51, 355, 865, 956, 1189, 1237, 1804, 1806
SfcI CTRYAG 3 cut(s) 657, 726, 1614
SfuI TTCGAA 1 cut(s) 689
SinI GGWCC 3 cut(s) 176, 1879, 1946
SmiMI CAYNNNNRTG 2 cut(s) 451, 1245
SmlI CTYRAG 4 cut(s) 214, 258, 603, 1190
SmoI CTYRAG 4 cut(s) 214, 258, 603, 1190
Sse9I AATT 8 cut(s) 369, 399, 416, 534, 983, 1031, 1490, 1831
SseBI AGGCCT 1 cut(s) 1527
SsiI CCGC 4 cut(s) 9, 647, 722, 1811
SspI AATATT 2 cut(s) 412, 462
SspMI CTAG 5 cut(s) 572, 888, 917, 1847, 1917
StuI AGGCCT 1 cut(s) 1527
StyD4I CCNGG 1 cut(s) 619
StyI CCWWGG 2 cut(s) 136, 1958
TaaI ACNGT 2 cut(s) 245, 1321
TaiI ACGT 3 cut(s) 1083, 1540, 1894
TaqI TCGA 6 cut(s) 125, 285, 689, 1107, 1719, 1994
TasI AATT 8 cut(s) 369, 399, 416, 534, 983, 1031, 1490, 1831
TatI WGTACW 1 cut(s) 1186
TauI GCSGC 2 cut(s) 650, 725
Tru1I TTAA 4 cut(s) 414, 1020, 1493, 1671
Tru9I TTAA 4 cut(s) 414, 1020, 1493, 1671
TscAI CASTG 4 cut(s) 585, 1326, 1687, 1948
TseFI GTSAC 4 cut(s) 1365, 1676, 1768, 1939
Tsp45I GTSAC 4 cut(s) 1365, 1676, 1768, 1939
TspDTI ATGAA 7 cut(s) 342, 1299, 1371, 1487, 1605, 1678, 1770
TspGWI ACGGA 3 cut(s) 110, 849, 1442
TspRI CASTG 4 cut(s) 585, 1326, 1687, 1948
Tth111I GACNNNGTC 1 cut(s) 180
VpaK11BI GGWCC 3 cut(s) 176, 1879, 1946
XapI RAATTY 2 cut(s) 416, 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 5 cut(s) 572, 888, 917, 1847, 1917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.