Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007133

Physical Location & Seq

Genomic Coordinates Reverse (-)

17272512 .. 17274376

Gene Structure 1865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1071400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGTCGTCGTCGTCGACTGAAGAACCGAATCAGGAGCATCTGCAGCGGCAGCAGCCACCACAACCGCCGCCGCAGCAACAGCAACAACAGCAGCAGCAGCAACCACAATCAGTGAAAGAGTGCGTGCACAAGACCAAGCTCATCCAATTCTTGGGACGCTCCGCGCCTATCGTCCTCCAGAACGACAATGGTCCCTGCCCGCTCCTCGCAATCTGTAACGTTCTCTCGCTGAGGAACAGCTTGAATTTGAGTCCAGACACGTCAGAAGTCTCACAGGAGAAACTACTTTCACTCATTGCTGAACGACTAATTGATTCTAACAGTAATATTGATAATAAAGATGCAGGATATGTAGAAAACCAACAGCAAAACATTGCTGATGCTATTGATCATCTCCCTCAACTTGCAACGGGGATTGATGTTAATATAAAATTCAGAAGGATAGATGATTTTGAGTTTACACCTGAGTGTGCCATATTTGACCTGTTAGACATTCCACTATATCATGGTTGGATCGTTGATCCGCAGGTTTGCTTCTTAGTTTTCCAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MINDY_DUB

Protein Analysis

186

Amino Acids

20.86

Weight (kDa)

4.59

Isoelectric Point (pI)

73.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MINDY_DUB	PF04424	43 - 177	9.7e-48	MINDY deubiquitinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11860
fragaria_vesca	FvH4_5g01250 FvH4_5g01250 FvH4_5g01250 FvH4_5g01250
malus_domestica	MD04G1069800.v1.1 MD04G1069900.v1.1 MD06G1071200.v1.1 MD06G1071400.v1.1
prunus_persica	Prupe.5G088000_v2.0.a1 Prupe.5G088000_v2.0.a1 Prupe.5G088000_v2.0.a1
pyrus_communis	pycom04g06350
rosa_chinensis	RchiOBHm_Chr7g0199771
rosa_laevigata	RLG00000003771
rosa_multiflora	Rmu_sc0002748.1_g000020
rosa_roxburghii	Rroxscaffold_3G00256450
rosa_rugosa	Rorug07G0056200 Rorug07G0056300 Rorug07G0056300
rosa_samantha	Rh7AG181600 Rh7BG184400 Rh7CG191200 Rh7DG184400
rosa_wichuraiana	Rw7G015920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	520
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	1 cut(s)	167
AciI	CCGC	7 cut(s)	49, 68, 71, 74, 165, 203, 527
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	2 cut(s)	518, 524
AcsI	RAATTY	2 cut(s)	247, 434
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	247
AjiI	CACGTC	1 cut(s)	264
AleI	CACNNNNGTG	1 cut(s)	469
AluBI	AGCT	2 cut(s)	142, 243
AluI	AGCT	2 cut(s)	142, 243
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	277
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	518, 524
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	7 cut(s)	46, 52, 55, 76, 94, 97, 100
ApoI	RAATTY	2 cut(s)	247, 434
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	194
BaeGI	GKGCMC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	7 cut(s)	58, 64, 67, 88, 106, 109, 112
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	1 cut(s)	277
BfmI	CTRYAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	520
Bme18I	GGWCC	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	3 cut(s)	49, 334, 373
BoxI	GACNNNNGTC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse3DI	GCAATG	2 cut(s)	297, 375
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	2 cut(s)	297, 375
BseMII	CTCAG	2 cut(s)	224, 459
BseRI	GAGGAG	1 cut(s)	197
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	7 cut(s)	58, 64, 67, 88, 106, 109, 112
Bsh1236I	CGCG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	132
BslFI	GGGAC	2 cut(s)	171, 180
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	171, 180
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	391, 516, 523
BspACI	CCGC	7 cut(s)	49, 68, 71, 74, 165, 203, 527
BspCNI	CTCAG	2 cut(s)	225, 460
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	48
BspMI	ACCTGC	1 cut(s)	520
BspPI	GGATC	2 cut(s)	518, 524
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	297, 375
BssMI	GATC	3 cut(s)	391, 516, 523
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	326
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	128, 203
BstDEI	CTNAG	4 cut(s)	233, 468, 541, 555
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	3 cut(s)	394, 519, 526
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	391, 516, 523
BstMWI	GCNNNNNNNGC	7 cut(s)	46, 52, 55, 76, 82, 91, 100
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	7 cut(s)	58, 64, 67, 88, 106, 109, 112
BtrI	CACGTC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	128, 203
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	168
CviAII	CATG	1 cut(s)	509
CviJI	RGCY	4 cut(s)	58, 142, 243, 553
CviKI_1	RGCY	4 cut(s)	58, 142, 243, 553
DdeI	CTNAG	4 cut(s)	233, 468, 541, 555
DpnI	GATC	3 cut(s)	393, 518, 525
DpnII	GATC	3 cut(s)	391, 516, 523
Eco47I	GGWCC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	42
FaeI	CATG	1 cut(s)	512
FaiI	YATR	5 cut(s)	354, 431, 479, 505, 510
FaqI	GGGAC	2 cut(s)	171, 180
FatI	CATG	1 cut(s)	508
FauI	CCCGC	1 cut(s)	210
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	17
FokI	GGATG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	164
HgaI	GACGC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	512
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	3 cut(s)	31, 253, 317
Hpy166II	GTNNAC	3 cut(s)	18, 130, 462
Hpy188I	TCNGA	2 cut(s)	268, 440
Hpy188III	TCNNGA	3 cut(s)	35, 181, 257
Hpy8I	GTNNAC	3 cut(s)	18, 130, 462
Hpy99I	CGWCG	4 cut(s)	10, 13, 16, 19
HpyAV	CCTTC	1 cut(s)	435
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	222, 263
HpyCH4V	TGCA	4 cut(s)	46, 130, 347, 410
HpyF10VI	GCNNNNNNNGC	7 cut(s)	46, 52, 55, 76, 82, 91, 100
HpyF3I	CTNAG	4 cut(s)	233, 468, 541, 555
HpySE526I	ACGT	2 cut(s)	222, 263
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	512
HspAI	GCGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	391, 516, 523
LmnI	GCTCC	3 cut(s)	37, 167, 210
LpnPI	CCDG	9 cut(s)	20, 194, 211, 263, 270, 333, 480, 500, 515
Lsp1109I	GCAGC	7 cut(s)	58, 64, 67, 88, 106, 109, 112
LweI	GCATC	3 cut(s)	49, 334, 373
MaeII	ACGT	2 cut(s)	222, 263
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	393, 518, 525
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	3 cut(s)	391, 516, 523
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	4 cut(s)	149, 247, 312, 434
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	494
MnlI	CCTC	4 cut(s)	188, 218, 228, 411
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	469
MspA1I	CMGCKG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	7 cut(s)	46, 52, 55, 76, 82, 91, 100
NdeII	GATC	3 cut(s)	391, 516, 523
NlaIII	CATG	1 cut(s)	512
NlaIV	GGNNCC	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	31, 317
PflMI	CCANNNNNTGG	1 cut(s)	154
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PshAI	GACNNNNGTC	1 cut(s)	192
Psp1406I	AACGTT	1 cut(s)	222
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	48
RseI	CAYNNNNRTG	1 cut(s)	469
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	3 cut(s)	391, 516, 523
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	7 cut(s)	144, 225, 245, 266, 469, 489, 534
SfaNI	GCATC	3 cut(s)	49, 334, 373
SfcI	CTRYAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	469
Sse9I	AATT	4 cut(s)	149, 247, 312, 434
SsiI	CCGC	7 cut(s)	49, 68, 71, 74, 165, 203, 527
SspI	AATATT	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	225, 266
TaqI	TCGA	1 cut(s)	17
TasI	AATT	4 cut(s)	149, 247, 312, 434
TauI	GCSGC	3 cut(s)	52, 73, 76
TfiI	GAWTC	2 cut(s)	31, 317
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	7 cut(s)	46, 52, 55, 76, 94, 97, 100
TspRI	CASTG	1 cut(s)	120
Van91I	CCANNNNNTGG	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	194
XapI	RAATTY	2 cut(s)	247, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.