Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013139

Physical Location & Seq

Genomic Coordinates Reverse (-)

7342800 .. 7343731

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G12410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAAGAGAGTCAGAGGGTTCAAAATTGGACACAGATTTGTCAAAATTTTCAAATGGATACCAAGAAACAGATGCCCGACCCGAATCACAAACCCGGTTACCGGAATCCGGTCATTAGCACGGTGTTTAAGCCGTGGAGCTAAGAGATTGTGCGGTGGAAGCAAGAAGAATCCGGGTCAGAATCAGATCCGGTTGGGTAAGGATCCGAAAAAGTCGAACCGGGTTGTTCCTCGAGGACATTTGGTGGTTCATGTCGGCGAATCAGACGATGACACGCGGCGAGTTGTGGTGCCGGTGATTTACTTTAATCATCCATTGTTTGGAGAATTGTTGGAGCAAGCGGAGCGGGTTCATGGGTTTGATCAACCGGGTCGGATCACTATTCCTTGTCGGGTTTCGGATTTTGAAAAAGTCCAGTTGAGGATCGCTGCATGGGATCATTGCCGCAGGAAAAATTCTTACAAGATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0010029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:1900055 GO:1900057 GO:1900140 GO:1905623 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

157

Amino Acids

18.1

Weight (kDa)

11.07

Isoelectric Point (pI)

24.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	59 - 138	1.2e-19	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G12410 AT4G22620
fragaria_vesca	FvH4_5g00360
malus_domestica	MD04G1082600.v1.1
prunus_persica	Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis	pycom04g07410
rosa_chinensis	RchiOBHm_Chr7g0202161
rosa_laevigata	RLG00000003620
rosa_multiflora	Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii	Rroxscaffold_3G00254790
rosa_rugosa	Rorug07G0068700
rosa_samantha	Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana	Rw7G017170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	231
AccB1I	GGYRCC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	346
AccII	CGCG	1 cut(s)	277
AciI	CCGC	5 cut(s)	153, 277, 341, 346, 445
AclWI	GGATC	6 cut(s)	181, 197, 210, 383, 431, 444
AcsI	RAATTY	2 cut(s)	45, 454
AfiI	CCNNNNNNNGG	3 cut(s)	101, 108, 320
AgsI	TTSAA	3 cut(s)	22, 52, 407
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	6 cut(s)	181, 197, 210, 383, 431, 444
Ama87I	CYCGRG	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	45, 454
AsuC2I	CCSGG	4 cut(s)	95, 174, 221, 369
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	415
BceAI	ACGGC	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	51
BclI	TGATCA	1 cut(s)	361
BcnI	CCSGG	4 cut(s)	95, 174, 221, 369
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	3 cut(s)	278, 429, 445
BlsI	GCNGC	3 cut(s)	279, 430, 446
Bme1390I	CCNGG	4 cut(s)	95, 174, 221, 369
BmeT110I	CYCGRG	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	204, 291
BmrFI	CCNGG	4 cut(s)	95, 174, 221, 369
BmsI	GCATC	1 cut(s)	62
BpuMI	CCSGG	4 cut(s)	95, 174, 221, 369
BsaJI	CCNNGG	1 cut(s)	133
BsaWI	WCCGGW	3 cut(s)	101, 108, 189
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 108, 320
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	101, 108, 320
BseMI	GCAATG	1 cut(s)	439
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	8 cut(s)	95, 102, 109, 173, 190, 220, 293, 368
BslI	CCNNNNNNNGG	3 cut(s)	101, 108, 320
BsoBI	CYCGRG	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	186, 202, 361, 375, 423, 436
BspACI	CCGC	5 cut(s)	153, 277, 341, 346, 445
BspFNI	CGCG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	204, 291
BspPI	GGATC	6 cut(s)	181, 197, 210, 383, 431, 444
BspT107I	GGYRCC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	439
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	6 cut(s)	186, 202, 361, 375, 423, 436
Bst4CI	ACNGT	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	133
BstEII	GGTNACC	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	277
BstKTI	GATC	6 cut(s)	189, 205, 364, 378, 426, 439
BstMBI	GATC	6 cut(s)	186, 202, 361, 375, 423, 436
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 343
BstPI	GGTNACC	1 cut(s)	97
BstSCI	CCNGG	4 cut(s)	93, 172, 219, 367
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	415
BstX2I	RGATCY	2 cut(s)	186, 202
BstYI	RGATCY	2 cut(s)	186, 202
BsuI	GTATCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	292
CviAII	CATG	3 cut(s)	251, 353, 432
CviJI	RGCY	2 cut(s)	132, 140
CviKI_1	RGCY	2 cut(s)	132, 140
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	6 cut(s)	188, 204, 363, 377, 425, 438
DpnII	GATC	6 cut(s)	186, 202, 361, 375, 423, 436
Eco88I	CYCGRG	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	97
EcoO65I	GGTNACC	1 cut(s)	97
FaeI	CATG	3 cut(s)	254, 356, 435
FaiI	YATR	5 cut(s)	252, 354, 433, 470, 472
FatI	CATG	3 cut(s)	250, 352, 431
FauI	CCCGC	1 cut(s)	339
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	278, 429, 445
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	3 cut(s)	278, 429, 445
GluI	GCNGC	3 cut(s)	278, 429, 445
HapII	CCGG	8 cut(s)	95, 102, 109, 173, 190, 220, 293, 368
Hin1II	CATG	3 cut(s)	254, 356, 435
HinfI	GANTC	6 cut(s)	9, 84, 105, 169, 181, 260
HpaII	CCGG	8 cut(s)	95, 102, 109, 173, 190, 220, 293, 368
HphI	GGTGA	1 cut(s)	307
Hpy188I	TCNGA	7 cut(s)	14, 180, 186, 207, 265, 375, 400
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 343
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	254, 356, 435
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	6 cut(s)	186, 202, 361, 375, 423, 436
LmnI	GCTCC	3 cut(s)	137, 334, 343
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	6 cut(s)	188, 204, 363, 377, 425, 438
MbiI	CCGCTC	1 cut(s)	346
MboI	GATC	6 cut(s)	186, 202, 361, 375, 423, 436
MboII	GAAGA	2 cut(s)	16, 178
MflI	RGATCY	2 cut(s)	186, 202
MluCI	AATT	4 cut(s)	24, 45, 326, 454
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	312, 353
MnlI	CCTC	4 cut(s)	8, 227, 240, 414
MseI	TTAA	2 cut(s)	128, 306
MspI	CCGG	8 cut(s)	95, 102, 109, 173, 190, 220, 293, 368
MspR9I	CCNGG	4 cut(s)	95, 174, 221, 369
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	2 cut(s)	159, 343
NciI	CCSGG	4 cut(s)	95, 174, 221, 369
NdeII	GATC	6 cut(s)	186, 202, 361, 375, 423, 436
NlaIII	CATG	3 cut(s)	254, 356, 435
NlaIV	GGNNCC	2 cut(s)	204, 291
PaeR7I	CTCGAG	1 cut(s)	231
PfeI	GAWTC	5 cut(s)	84, 105, 169, 181, 260
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	279, 430, 446
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	204, 291
PspXI	VCTCGAGB	1 cut(s)	231
PsuI	RGATCY	2 cut(s)	186, 202
SaqAI	TTAA	2 cut(s)	128, 306
SatI	GCNGC	3 cut(s)	278, 429, 445
Sau3AI	GATC	6 cut(s)	186, 202, 361, 375, 423, 436
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	4 cut(s)	95, 174, 221, 369
SetI	ASST	1 cut(s)	142
SfaNI	GCATC	1 cut(s)	62
Sfr274I	CTCGAG	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	4 cut(s)	24, 45, 326, 454
SsiI	CCGC	5 cut(s)	153, 277, 341, 346, 445
StyD4I	CCNGG	4 cut(s)	93, 172, 219, 367
TaaI	ACNGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	215, 232
TasI	AATT	4 cut(s)	24, 45, 326, 454
TauI	GCSGC	2 cut(s)	280, 447
TfiI	GAWTC	5 cut(s)	84, 105, 169, 181, 260
Tru1I	TTAA	2 cut(s)	128, 306
Tru9I	TTAA	2 cut(s)	128, 306
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	17, 239, 341
Van91I	CCANNNNNTGG	1 cut(s)	320
XapI	RAATTY	2 cut(s)	45, 454
XhoI	CTCGAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.