RLG00000003620

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013139
Physical Location & Seq
Forward (+)
50871293 .. 50871796
504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003620

Sequence Viewer

Length: 504 bp
ATGAAAAAGAGCAGAGGTTTCAGGCTGAGAGTACACAAGCTGGTGAAGATCTTCAAATGGATAGTCCGACCCAGAAGAGAGCCGGGCCGGTACAAGAGGCTGGAATCCCCTACGGCCAGAACGTACAACCCCATTTCCAAATTCTTCACCTTGGCAAGGTCTCTTCGACGTGGAGCCAAGCAGCTGTGTTTTCCTAACTCGGGTTACATGCGGGTCGGGCAGGCTCCGGAGGAAGGAAACCCGGTGGTTGTTCCGAAGGGGCACATGGCGGTGTACGTGGGGGAGTCGGACGACGACACGCAGAGGTACGTGGTGCCTGTCATATACTTCAATCACCCGCTGTTTGGGGAGCTGTTGAAGGAGGCCGAGAAGGTTTACGGGTTCAACCATCCGGGTCGGATCGTCATACCGTGTGGGGCTACGGAGTTTGAGAAGGTGCAGATGAGGATCGCTGCAGGGGACCATTGTCAACGGCGGAGAAGGAATAGTAACCGTCGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

168

Amino Acids

19.48

Weight (kDa)

10.52

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 77 - 146 1.4e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 4 cut(s) 211, 269, 338, 475
AclWI GGATC 2 cut(s) 407, 455
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 5 cut(s) 33, 92, 125, 275, 308
AfiI CCNNNNNNNGG 4 cut(s) 156, 200, 233, 344
AgsI TTSAA 4 cut(s) 55, 331, 358, 385
AjiI CACGTC 1 cut(s) 170
AluBI AGCT 3 cut(s) 40, 184, 352
AluI AGCT 3 cut(s) 40, 184, 352
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 2 cut(s) 407, 455
Ama87I CYCGRG 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 3 cut(s) 85, 114, 363
ApeKI GCWGC 2 cut(s) 181, 452
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 85, 460
AsuC2I CCSGG 3 cut(s) 84, 242, 393
AsuHPI GGTGA 3 cut(s) 55, 139, 326
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 313
BbvI GCAGC 2 cut(s) 193, 439
BccI CCATC 1 cut(s) 396
BceAI ACGGC 2 cut(s) 129, 488
BcnI CCSGG 3 cut(s) 84, 242, 393
BcoDI GTCTC 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 453
BglII AGATCT 1 cut(s) 48
BisI GCNGC 2 cut(s) 182, 453
BlsI GCNGC 2 cut(s) 183, 454
Bme1390I CCNGG 3 cut(s) 84, 242, 393
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 85, 460
BmiI GGNNCC 4 cut(s) 175, 225, 315, 461
BmrFI CCNGG 3 cut(s) 84, 242, 393
BoxI GACNNNNGTC 1 cut(s) 465
BpuMI CCSGG 3 cut(s) 84, 242, 393
BsaAI YACGTR 2 cut(s) 277, 310
BsaBI GATNNNNATC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 226
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 200, 233, 344
Bse118I RCCGGY 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 446
BseAI TCCGGA 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 388
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 4 cut(s) 156, 200, 233, 344
BseMII CTCAG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 2 cut(s) 193, 439
BsgI GTGCAG 1 cut(s) 458
BshFI GGCC 3 cut(s) 87, 116, 365
BshNI GGYRCC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 5 cut(s) 83, 88, 227, 242, 392
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 4 cut(s) 156, 200, 233, 344
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 3 cut(s) 87, 116, 365
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 3 cut(s) 48, 399, 447
BspACI CCGC 4 cut(s) 211, 269, 338, 475
BspANI GGCC 3 cut(s) 87, 116, 365
BspCNI CTCAG 1 cut(s) 18
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 4 cut(s) 175, 225, 315, 461
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 2 cut(s) 407, 455
BspT107I GGYRCC 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 48, 399, 447
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 411, 494
Bst6I CTCTTC 2 cut(s) 70, 168
BstBAI YACGTR 2 cut(s) 277, 310
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 3 cut(s) 51, 402, 450
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 3 cut(s) 48, 399, 447
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 211
BstPAI GACNNNNGTC 1 cut(s) 465
BstSCI CCNGG 3 cut(s) 82, 240, 391
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 193, 439
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 3 cut(s) 87, 116, 365
BtrI CACGTC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 85, 460
Csp6I GTAC 5 cut(s) 32, 91, 124, 274, 307
CviAII CATG 2 cut(s) 208, 265
CviQI GTAC 5 cut(s) 32, 91, 124, 274, 307
DdeI CTNAG 1 cut(s) 26
DpnI GATC 3 cut(s) 50, 401, 449
DpnII GATC 3 cut(s) 48, 399, 447
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 70, 168
EarI CTCTTC 2 cut(s) 70, 168
EciI GGCGGA 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 211, 268
FaiI YATR 5 cut(s) 209, 266, 323, 325, 407
FaqI GGGAC 1 cut(s) 473
FatI CATG 2 cut(s) 207, 264
FauI CCCGC 2 cut(s) 204, 345
Fnu4HI GCNGC 2 cut(s) 182, 453
FokI GGATG 1 cut(s) 375
Fsp4HI GCNGC 2 cut(s) 182, 453
GluI GCNGC 2 cut(s) 182, 453
HaeIII GGCC 3 cut(s) 87, 116, 365
HapII CCGG 5 cut(s) 83, 88, 227, 242, 392
Hin1II CATG 2 cut(s) 211, 268
HincII GTYRAC 1 cut(s) 470
HindII GTYRAC 1 cut(s) 470
HinfI GANTC 2 cut(s) 104, 284
HpaII CCGG 5 cut(s) 83, 88, 227, 242, 392
HphI GGTGA 3 cut(s) 55, 139, 326
Hpy166II GTNNAC 4 cut(s) 34, 274, 376, 470
Hpy188I TCNGA 4 cut(s) 68, 255, 289, 399
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 4 cut(s) 34, 274, 376, 470
Hpy99I CGWCG 3 cut(s) 171, 296, 498
HpyAV CCTTC 6 cut(s) 227, 250, 352, 364, 427, 474
HpyCH4III ACNGT 2 cut(s) 411, 494
HpyCH4IV ACGT 4 cut(s) 122, 169, 276, 309
HpyCH4V TGCA 2 cut(s) 439, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 4 cut(s) 122, 169, 276, 309
Hsp92II CATG 2 cut(s) 211, 268
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 3 cut(s) 48, 399, 447
LmnI GCTCC 3 cut(s) 173, 229, 349
Lsp1109I GCAGC 2 cut(s) 193, 439
MaeII ACGT 4 cut(s) 122, 169, 276, 309
MaeIII GTNAC 2 cut(s) 203, 488
MalI GATC 3 cut(s) 50, 401, 449
MboI GATC 3 cut(s) 48, 399, 447
MboII GAAGA 5 cut(s) 43, 58, 87, 136, 155
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 140
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 3 cut(s) 91, 267, 377
MnlI CCTC 6 cut(s) 8, 90, 223, 297, 355, 438
MroI TCCGGA 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 2 cut(s) 184, 340
MspI CCGG 5 cut(s) 83, 88, 227, 242, 392
MspR9I CCNGG 3 cut(s) 84, 242, 393
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 3 cut(s) 84, 242, 393
NdeII GATC 3 cut(s) 48, 399, 447
NlaIII CATG 2 cut(s) 211, 268
NlaIV GGNNCC 4 cut(s) 175, 225, 315, 461
NmeAIII GCCGAG 1 cut(s) 391
NspI RCATGY 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 183, 454
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Ppu21I YACGTR 2 cut(s) 277, 310
PshAI GACNNNNGTC 1 cut(s) 465
PspN4I GGNNCC 4 cut(s) 175, 225, 315, 461
PspPI GGNCC 2 cut(s) 85, 460
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 5 cut(s) 33, 92, 125, 275, 308
RsaNI GTAC 5 cut(s) 32, 91, 124, 274, 307
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 2 cut(s) 182, 453
Sau3AI GATC 3 cut(s) 48, 399, 447
Sau96I GGNCC 2 cut(s) 85, 460
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 3 cut(s) 84, 242, 393
SduI GDGCHC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 1 cut(s) 140
SsiI CCGC 4 cut(s) 211, 269, 338, 475
StyD4I CCNGG 3 cut(s) 82, 240, 391
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 411, 494
TaiI ACGT 4 cut(s) 125, 172, 279, 312
TaqI TCGA 1 cut(s) 166
TasI AATT 1 cut(s) 140
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 104
TseI GCWGC 2 cut(s) 181, 452
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 460
XagI CCTNNNNNAGG 1 cut(s) 154
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.