Rorug07G0068700

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013139
Physical Location & Seq
Forward (+)
5212630 .. 5213755
1126 bp
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UTR
Exon/CDS
Intron
Rorug07G0068700.1

Sequence Viewer

Length: 696 bp
ATGAGCCCCCATGCAAATAAGATCACCACCAACAACACCACCACCACCACCACCAATGCCCTATATCCACCGCCGTTGAAGATCAACAAGGACTCCCATTTCATCAAGAAACCCTCCTCCTCCTCCTCCACCTCTTCGCCGCCGTCGTCGTCATCCTCATCGTCCACGTACGCAATGTTAGGGTCCACCGCCACGAGACCGCCGCAGCAGCAGCGTCACCCGGTGATCATCTACACGCATTCCCCTAAAATCATCCACACGCACCCGCGTGACTTCATGGCGCTGGTGCAGAAGCTCACCGGCCTCTCGCGGTTCGAGGATGACACGTCGCCGCCTCCCTCGGCGGCGGCGAAATCGGAACCGCCAGAGACGGGAAATAACAACAACAACAACGTTGGCATGTCGTCATTGGAGGAGGAGATGATGAATAAGAGCCCTAATCAGGTTAATAGCAACAATGTGATGATAAGAAACGACGACAACGAATCTTCGTCGGTGATTACCGAAGAGAATTGCAGCAGCAATAACAGTAATAATAATCTTAGCAACGTAGGAGGAGGAGGGGATTCATCATCTTGCTTTGTGCCGCCGAATCCATATCTAACCAACATTCCGGTGTTCACGCCGAACACGGATTTCTTGTGCACCAATTCCATGAACATATTTAATTACGACTCTATGATCGATCATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

231

Amino Acids

25.07

Weight (kDa)

5.94

Isoelectric Point (pI)

69.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 79 - 103 2e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 268, 310
AclI AACGTT 1 cut(s) 393
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 371, 442
AflIII ACRYGT 1 cut(s) 324
AgsI TTSAA 1 cut(s) 79
AjiI CACGTC 1 cut(s) 327
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 2 cut(s) 190, 362
Alw44I GTGCAC 1 cut(s) 643
AoxI GGCC 1 cut(s) 301
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 5 cut(s) 205, 208, 211, 516, 519
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 5 cut(s) 16, 209, 235, 289, 508
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 647
BanII GRGCYC 2 cut(s) 8, 437
BauI CACGAG 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 5 cut(s) 217, 220, 223, 528, 531
BceAI ACGGC 2 cut(s) 58, 127
BclI TGATCA 1 cut(s) 225
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 190, 362
BfoI RGCGCY 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 183
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 2 cut(s) 184, 360
BmrFI CCNGG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 684
BsaAI YACGTR 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 442
Bse118I RCCGGY 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 180
BseCI ATCGAT 1 cut(s) 684
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 3 cut(s) 152, 252, 325
BseLI CCNNNNNNNGG 2 cut(s) 371, 442
BseMI GCAATG 1 cut(s) 180
BseRI GAGGAG 8 cut(s) 106, 109, 112, 115, 428, 431, 570, 573
BseSI GKGCMC 1 cut(s) 647
BseXI GCAGC 5 cut(s) 217, 220, 223, 528, 531
BsgI GTGCAG 1 cut(s) 308
Bsh1236I CGCG 2 cut(s) 268, 310
BshFI GGCC 1 cut(s) 303
BshVI ATCGAT 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 647
BsiSI CCGG 3 cut(s) 221, 300, 614
BsiWI CGTACG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 371, 442
BsmAI GTCTC 2 cut(s) 190, 362
BsmBI CGTCTC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 1 cut(s) 303
Bso31I GGTCTC 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 8, 437, 647
Bsp143I GATC 5 cut(s) 21, 81, 225, 681, 685
BspANI GGCC 1 cut(s) 303
BspDI ATCGAT 1 cut(s) 684
BspFNI CGCG 2 cut(s) 268, 310
BspLI GGNNCC 2 cut(s) 184, 360
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 5 cut(s) 21, 81, 225, 681, 685
BssSI CACGAG 1 cut(s) 193
Bst2BI CACGAG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 2 cut(s) 139, 501
BstBAI YACGTR 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 542
BstF5I GGATG 3 cut(s) 152, 252, 325
BstFNI CGCG 2 cut(s) 268, 310
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 5 cut(s) 24, 84, 228, 684, 688
BstMAI GTCTC 2 cut(s) 190, 362
BstMBI GATC 5 cut(s) 21, 81, 225, 681, 685
BstMWI GCNNNNNNNGC 2 cut(s) 208, 211
BstNSI RCATGY 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 647
BstUI CGCG 2 cut(s) 268, 310
BstV1I GCAGC 5 cut(s) 217, 220, 223, 528, 531
Bsu15I ATCGAT 1 cut(s) 684
BsuRI GGCC 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 684
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 3 cut(s) 152, 252, 325
CfoI GCGC 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 183
ClaI ATCGAT 1 cut(s) 684
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 169
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 4 cut(s) 11, 277, 400, 655
CviJI RGCY 4 cut(s) 6, 295, 303, 435
CviKI_1 RGCY 4 cut(s) 6, 295, 303, 435
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 542
DpnI GATC 5 cut(s) 23, 83, 227, 683, 687
DpnII GATC 5 cut(s) 21, 81, 225, 681, 685
DraIII CACNNNGTG 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 139, 501
EarI CTCTTC 2 cut(s) 139, 501
Eco24I GRGCYC 2 cut(s) 8, 437
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 183
EcoT38I GRGCYC 2 cut(s) 8, 437
Esp3I CGTCTC 1 cut(s) 362
FaeI CATG 4 cut(s) 14, 280, 403, 658
FaiI YATR 8 cut(s) 12, 64, 278, 401, 598, 656, 662, 680
FatI CATG 4 cut(s) 10, 276, 399, 654
FauI CCCGC 1 cut(s) 273
FbaI TGATCA 1 cut(s) 225
FokI GGATG 3 cut(s) 139, 239, 332
FriOI GRGCYC 2 cut(s) 8, 437
GlaI GCGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 1 cut(s) 303
HapII CCGG 3 cut(s) 221, 300, 614
HgaI GACGC 1 cut(s) 203
HhaI GCGC 1 cut(s) 283
Hin1II CATG 4 cut(s) 14, 280, 403, 658
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 5 cut(s) 92, 485, 566, 592, 674
HpaII CCGG 3 cut(s) 221, 300, 614
HphI GGTGA 5 cut(s) 16, 209, 235, 289, 508
Hpy166II GTNNAC 4 cut(s) 165, 186, 621, 645
Hpy188I TCNGA 1 cut(s) 358
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 4 cut(s) 165, 186, 621, 645
Hpy99I CGWCG 5 cut(s) 148, 151, 331, 479, 496
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4IV ACGT 4 cut(s) 167, 326, 393, 549
HpyCH4V TGCA 4 cut(s) 14, 289, 516, 645
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 211
HpyF3I CTNAG 1 cut(s) 542
HpySE526I ACGT 4 cut(s) 167, 326, 393, 549
Hsp92II CATG 4 cut(s) 14, 280, 403, 658
HspAI GCGC 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 5 cut(s) 21, 81, 225, 681, 685
LpnPI CCDG 6 cut(s) 234, 269, 313, 378, 428, 627
Lsp1109I GCAGC 5 cut(s) 217, 220, 223, 528, 531
MaeII ACGT 4 cut(s) 167, 326, 393, 549
MaeIII GTNAC 2 cut(s) 215, 269
MalI GATC 5 cut(s) 23, 83, 227, 683, 687
MboI GATC 5 cut(s) 21, 81, 225, 681, 685
MboII GAAGA 4 cut(s) 91, 126, 480, 518
MhlI GDGCHC 3 cut(s) 8, 437, 647
MluCI AATT 3 cut(s) 511, 649, 667
MlyI GAGTC 2 cut(s) 86, 668
MseI TTAA 2 cut(s) 447, 666
MslI CAYNNNNRTG 2 cut(s) 267, 614
MspI CCGG 3 cut(s) 221, 300, 614
MspR9I CCNGG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 238
MvnI CGCG 2 cut(s) 268, 310
MwoI GCNNNNNNNGC 2 cut(s) 208, 211
NciI CCSGG 1 cut(s) 221
NdeII GATC 5 cut(s) 21, 81, 225, 681, 685
NlaIII CATG 4 cut(s) 14, 280, 403, 658
NlaIV GGNNCC 2 cut(s) 184, 360
NmeAIII GCCGAG 1 cut(s) 320
NmuCI GTSAC 2 cut(s) 215, 269
NspI RCATGY 1 cut(s) 403
OliI CACNNNNGTG 1 cut(s) 267
PcsI WCGNNNNNNNCGW 3 cut(s) 143, 347, 480
PctI GAATGC 1 cut(s) 238
PfeI GAWTC 3 cut(s) 485, 566, 592
Pfl23II CGTACG 1 cut(s) 168
PleI GAGTC 2 cut(s) 86, 668
PpsI GAGTC 2 cut(s) 86, 668
Ppu21I YACGTR 1 cut(s) 168
Psp1406I AACGTT 1 cut(s) 393
PspLI CGTACG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 184, 360
PspPI GGNCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 2 cut(s) 267, 614
SaqAI TTAA 2 cut(s) 447, 666
Sau3AI GATC 5 cut(s) 21, 81, 225, 681, 685
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 2 cut(s) 86, 668
ScrFI CCNGG 1 cut(s) 221
SduI GDGCHC 3 cut(s) 8, 437, 647
SetI ASST 7 cut(s) 134, 170, 297, 329, 396, 447, 552
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 267, 614
Sse9I AATT 3 cut(s) 511, 649, 667
StyD4I CCNGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 530
TaiI ACGT 4 cut(s) 170, 329, 396, 552
TaqI TCGA 2 cut(s) 315, 684
TasI AATT 3 cut(s) 511, 649, 667
TauI GCSGC 6 cut(s) 142, 205, 334, 347, 350, 589
TfiI GAWTC 3 cut(s) 485, 566, 592
Tru1I TTAA 2 cut(s) 447, 666
Tru9I TTAA 2 cut(s) 447, 666
TseFI GTSAC 2 cut(s) 215, 269
TseI GCWGC 5 cut(s) 205, 208, 211, 516, 519
Tsp45I GTSAC 2 cut(s) 215, 269
TspDTI ATGAA 5 cut(s) 91, 265, 440, 558, 671
TspGWI ACGGA 1 cut(s) 647
VneI GTGCAC 1 cut(s) 643
VpaK11BI GGWCC 1 cut(s) 183
XceI RCATGY 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.