Prupe.8G063100_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013139
Physical Location & Seq
Reverse (-)
9167730 .. 9168155
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G063100.1

Sequence Viewer

Length: 426 bp
ATGAGAAAGAACAGAGGTTTCAGGCTAAGACACAAGCTAGTGAGAATCTTCAAATGGATTATCCTACCCAGAAAAGACCTGAATCGATGCCAGAGACTGGAGCCTCCGACCCAAAACTACAACCCCATTTCCAAATTCTTCACCTTGGCTCGGTTTCTTCGGCGTGGAGCAAAGCAGATCTGTTCGGCAAACTCGGGTTATATTCGGATCCGTGAAGCCCCTGTTGAAACCAAAGTTGCAAAACCGGTTTCTGTACCGAAAGGGCATCTGGCTGTGTACCTGTTGAAGGAGGCTGAGAAGGTTTATGGGTTCAATCATCCAGGTCGGATCGTGATACCATGTGAGGTTTCGGAGTTTGAGAAGGTGCATATGAAGATTGCCGCATGGGATCAATGCCCAAGGCGGAGAAGGAAAAGCCGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

142

Amino Acids

16.71

Weight (kDa)

11.12

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 97
AciI CCGC 2 cut(s) 381, 403
AclWI GGATC 4 cut(s) 202, 215, 335, 396
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 2 cut(s) 255, 278
AfiI CCNNNNNNNGG 3 cut(s) 97, 150, 286
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 4 cut(s) 52, 227, 286, 313
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 4 cut(s) 202, 215, 335, 396
AlwNI CAGNNNCTG 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 193
ApoI RAATTY 1 cut(s) 134
AsiGI ACCGGT 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 193
BamHI GGATCC 1 cut(s) 207
BceAI ACGGC 1 cut(s) 402
BciT130I CCWGG 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 38, 424
BglII AGATCT 1 cut(s) 177
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 102, 209
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 2 cut(s) 77, 274
BpmI CTGGAG 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 144, 398
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 150, 286
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 85
BseDI CCNNGG 2 cut(s) 144, 398
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 3 cut(s) 97, 150, 286
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 102
BshTI ACCGGT 1 cut(s) 244
BshVI ATCGAT 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 97, 150, 286
BsmAI GTCTC 1 cut(s) 88
BsoBI CYCGRG 1 cut(s) 193
Bsp143I GATC 4 cut(s) 177, 207, 327, 388
BspACI CCGC 2 cut(s) 381, 403
BspCNI CTCAG 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 102, 209
BspPI GGATC 4 cut(s) 202, 215, 335, 396
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 2 cut(s) 144, 398
BssMI GATC 4 cut(s) 177, 207, 327, 388
BssT1I CCWWGG 2 cut(s) 144, 398
Bst2UI CCWGG 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 26, 294
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 4 cut(s) 180, 210, 330, 391
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 4 cut(s) 177, 207, 327, 388
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstX2I RGATCY 2 cut(s) 177, 207
BstYI RGATCY 2 cut(s) 177, 207
Bsu15I ATCGAT 1 cut(s) 85
BsuTUI ATCGAT 1 cut(s) 85
BtsCI GGATG 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 97
Cfr10I RCCGGY 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 85
Csp6I GTAC 2 cut(s) 254, 277
CspAI ACCGGT 1 cut(s) 244
CviAII CATG 2 cut(s) 339, 384
CviJI RGCY 8 cut(s) 25, 37, 103, 149, 218, 272, 293, 417
CviKI_1 RGCY 8 cut(s) 25, 37, 103, 149, 218, 272, 293, 417
CviQI GTAC 2 cut(s) 254, 277
DdeI CTNAG 2 cut(s) 26, 294
DpnI GATC 4 cut(s) 179, 209, 329, 390
DpnII GATC 4 cut(s) 177, 207, 327, 388
EciI GGCGGA 1 cut(s) 418
Eco130I CCWWGG 2 cut(s) 144, 398
Eco88I CYCGRG 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 2 cut(s) 144, 398
ErhI CCWWGG 2 cut(s) 144, 398
FaeI CATG 2 cut(s) 342, 387
FaiI YATR 6 cut(s) 201, 306, 340, 369, 371, 385
FatI CATG 2 cut(s) 338, 383
FauNDI CATATG 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 2 cut(s) 38, 424
GluI GCNGC 1 cut(s) 381
GsuI CTGGAG 1 cut(s) 119
HapII CCGG 1 cut(s) 245
Hin1II CATG 2 cut(s) 342, 387
HinfI GANTC 2 cut(s) 45, 82
HpaII CCGG 1 cut(s) 245
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 4 cut(s) 108, 207, 327, 352
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 423
HpyAV CCTTC 4 cut(s) 280, 292, 355, 402
HpyCH4V TGCA 2 cut(s) 239, 367
HpyF3I CTNAG 2 cut(s) 26, 294
Hsp92II CATG 2 cut(s) 342, 387
Kzo9I GATC 4 cut(s) 177, 207, 327, 388
LmnI GCTCC 2 cut(s) 100, 167
LweI GCATC 2 cut(s) 77, 274
MaeI CTAG 2 cut(s) 38, 424
MalI GATC 4 cut(s) 179, 209, 329, 390
MboI GATC 4 cut(s) 177, 207, 327, 388
MboII GAAGA 4 cut(s) 40, 130, 149, 385
MflI RGATCY 2 cut(s) 177, 207
MluCI AATT 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 131, 305
MnlI CCTC 4 cut(s) 8, 114, 283, 337
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
NdeI CATATG 1 cut(s) 369
NdeII GATC 4 cut(s) 177, 207, 327, 388
NlaIII CATG 2 cut(s) 342, 387
NlaIV GGNNCC 2 cut(s) 102, 209
PfeI GAWTC 2 cut(s) 45, 82
PflMI CCANNNNNTGG 1 cut(s) 97
PinAI ACCGGT 1 cut(s) 244
PkrI GCNGC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 102, 209
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 2 cut(s) 177, 207
RsaI GTAC 2 cut(s) 255, 278
RsaNI GTAC 2 cut(s) 254, 277
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 4 cut(s) 177, 207, 327, 388
ScrFI CCNGG 1 cut(s) 321
SetI ASST 9 cut(s) 19, 39, 81, 146, 282, 303, 325, 348, 366
SfaNI GCATC 2 cut(s) 77, 274
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 381, 403
SspMI CTAG 2 cut(s) 38, 424
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 2 cut(s) 144, 398
TaqI TCGA 1 cut(s) 85
TasI AATT 1 cut(s) 134
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 2 cut(s) 45, 82
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 97
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 134
XspI CTAG 2 cut(s) 38, 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.