FvH4_5g00360

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013139
Physical Location & Seq
Forward (+)
259333 .. 261636
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00360.t1

Sequence Viewer

Length: 537 bp
ATGATGAACGCCCACAGAATGAGAAAGAGCAGAGGTTTCAGGCTGAGAGTACACAAGCTGGTCAAGATCTTCAAATGGATAGTCCATCGACCCAGAAGAGAGCCGGTCCGGTACCAGAGGCTGCAATCCACGACGTCCAGAAGTACGTACAACCCCGTTTCCAAATTCTTGACCTTGGCAAGGTCTCTTCGACGTGGAGCCAAGCAGCTGTGTTTTCCTAATAACTCGGGTTACATGCGGGTTGGACAGTCCCCGGATGAAGCGAAACCGGTGGTTGTTCCGAAGGGACACATGGCCGTGTACGTGGGGGAGTCCGACGACGACACGCAGAGGTACTTGGTGCCTGTCATATACTTCAATCACCCGCTGTTCGGGGAGTTGTTGAAGGAGGCTGAGAAGGTTTACGGGTTCAACCATCCGGGTCGGATCGTTATACCATGTGAGGCTTCCGAGTTTGAGAAGGTGCAGATGAGGATTGCTGCAGGGGACCATTGTCAACGGCGGAGGAGGACTAGTACCCGTCGCCATTACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

179

Amino Acids

20.96

Weight (kDa)

10.71

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 70 - 155 1.4e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 111
AccB1I GGYRCC 2 cut(s) 111, 340
AciI CCGC 3 cut(s) 238, 365, 502
AclWI GGATC 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 7 cut(s) 51, 113, 145, 149, 302, 335, 517
AfiI CCNNNNNNNGG 2 cut(s) 180, 371
AgeI ACCGGT 1 cut(s) 268
AgsI TTSAA 4 cut(s) 73, 358, 385, 412
AhlI ACTAGT 1 cut(s) 512
AjiI CACGTC 1 cut(s) 194
AluBI AGCT 2 cut(s) 58, 208
AluI AGCT 2 cut(s) 58, 208
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 434
AlwNI CAGNNNCTG 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 3 cut(s) 121, 205, 479
ApoI RAATTY 1 cut(s) 164
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AsiGI ACCGGT 1 cut(s) 268
Asp718I GGTACC 1 cut(s) 111
AspS9I GGNCC 2 cut(s) 106, 487
AsuC2I CCSGG 2 cut(s) 254, 420
AsuHPI GGTGA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 2 cut(s) 106, 487
BanI GGYRCC 2 cut(s) 111, 340
BbvI GCAGC 3 cut(s) 108, 217, 466
BccI CCATC 2 cut(s) 93, 423
BceAI ACGGC 2 cut(s) 281, 515
BcnI CCSGG 2 cut(s) 254, 420
BcoDI GTCTC 1 cut(s) 189
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 480
BglII AGATCT 1 cut(s) 66
BisI GCNGC 3 cut(s) 122, 206, 480
BlsI GCNGC 3 cut(s) 123, 207, 481
Bme1390I CCNGG 2 cut(s) 254, 420
Bme18I GGWCC 2 cut(s) 106, 487
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 106, 487
BmiI GGNNCC 4 cut(s) 113, 199, 342, 488
BmrFI CCNGG 2 cut(s) 254, 420
BoxI GACNNNNGTC 1 cut(s) 492
BpuMI CCSGG 2 cut(s) 254, 420
BsaAI YACGTR 2 cut(s) 147, 304
BsaHI GRCGYC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 174, 252
BsaWI WCCGGW 2 cut(s) 108, 268
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 371
Bse118I RCCGGY 2 cut(s) 103, 268
BseDI CCNNGG 2 cut(s) 174, 252
BseGI GGATG 2 cut(s) 262, 415
BseLI CCNNNNNNNGG 2 cut(s) 180, 371
BseMII CTCAG 2 cut(s) 35, 384
BseRI GAGGAG 1 cut(s) 520
BseXI GCAGC 3 cut(s) 108, 217, 466
BsgI GTGCAG 1 cut(s) 485
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 2 cut(s) 111, 340
BshTI ACCGGT 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 5 cut(s) 104, 109, 254, 269, 419
BslFI GGGAC 3 cut(s) 235, 300, 500
BslI CCNNNNNNNGG 2 cut(s) 180, 371
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 3 cut(s) 235, 300, 500
BsnI GGCC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 226
Bsp143I GATC 2 cut(s) 66, 426
BspACI CCGC 3 cut(s) 238, 365, 502
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 36, 385
BspLI GGNNCC 4 cut(s) 113, 199, 342, 488
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 1 cut(s) 434
BspT107I GGYRCC 2 cut(s) 111, 340
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 103, 268
BssAI RCCGGY 2 cut(s) 103, 268
BssECI CCNNGG 2 cut(s) 174, 252
BssMI GATC 2 cut(s) 66, 426
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 249
Bst6I CTCTTC 2 cut(s) 91, 192
BstACI GRCGYC 1 cut(s) 134
BstBAI YACGTR 2 cut(s) 147, 304
BstDEI CTNAG 2 cut(s) 44, 393
BstENI CCTNNNNNAGG 1 cut(s) 178
BstF5I GGATG 2 cut(s) 262, 415
BstKTI GATC 2 cut(s) 69, 429
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 2 cut(s) 66, 426
BstNSI RCATGY 1 cut(s) 238
BstPAI GACNNNNGTC 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 252, 418
BstSFI CTRYAG 1 cut(s) 480
BstSNI TACGTA 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 108, 217, 466
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 1 cut(s) 296
BtrI CACGTC 1 cut(s) 194
BtsCI GGATG 2 cut(s) 262, 415
CaiI CAGNNNCTG 1 cut(s) 121
Cfr10I RCCGGY 2 cut(s) 103, 268
Cfr13I GGNCC 2 cut(s) 106, 487
CpoI CGGWCCG 1 cut(s) 106
Csp6I GTAC 7 cut(s) 50, 112, 144, 148, 301, 334, 516
CspAI ACCGGT 1 cut(s) 268
CspI CGGWCCG 1 cut(s) 106
CviAII CATG 3 cut(s) 235, 292, 438
CviJI RGCY 9 cut(s) 43, 58, 103, 121, 200, 208, 296, 392, 446
CviKI_1 RGCY 9 cut(s) 43, 58, 103, 121, 200, 208, 296, 392, 446
CviQI GTAC 7 cut(s) 50, 112, 144, 148, 301, 334, 516
DdeI CTNAG 2 cut(s) 44, 393
DpnI GATC 2 cut(s) 68, 428
DpnII GATC 2 cut(s) 66, 426
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 2 cut(s) 91, 192
EarI CTCTTC 2 cut(s) 91, 192
EciI GGCGGA 1 cut(s) 517
Eco105I TACGTA 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 106, 487
Eco88I CYCGRG 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 238, 295, 441
FaiI YATR 6 cut(s) 236, 293, 350, 352, 434, 439
FaqI GGGAC 3 cut(s) 235, 300, 500
FatI CATG 3 cut(s) 234, 291, 437
FauI CCCGC 2 cut(s) 231, 372
Fnu4HI GCNGC 3 cut(s) 122, 206, 480
FokI GGATG 2 cut(s) 269, 402
Fsp4HI GCNGC 3 cut(s) 122, 206, 480
FspBI CTAG 1 cut(s) 513
GluI GCNGC 3 cut(s) 122, 206, 480
HaeIII GGCC 1 cut(s) 296
HapII CCGG 5 cut(s) 104, 109, 254, 269, 419
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 3 cut(s) 238, 295, 441
HincII GTYRAC 1 cut(s) 497
HindII GTYRAC 1 cut(s) 497
HinfI GANTC 1 cut(s) 311
HpaII CCGG 5 cut(s) 104, 109, 254, 269, 419
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 4 cut(s) 52, 301, 403, 497
Hpy188I TCNGA 4 cut(s) 282, 316, 426, 451
Hpy188III TCNNGA 3 cut(s) 64, 138, 169
Hpy8I GTNNAC 4 cut(s) 52, 301, 403, 497
Hpy99I CGWCG 5 cut(s) 136, 195, 320, 323, 525
HpyAV CCTTC 4 cut(s) 277, 379, 391, 454
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 4 cut(s) 134, 146, 193, 303
HpyCH4V TGCA 3 cut(s) 124, 466, 482
HpyF3I CTNAG 2 cut(s) 44, 393
HpySE526I ACGT 4 cut(s) 134, 146, 193, 303
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 3 cut(s) 238, 295, 441
KpnI GGTACC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 66, 426
LmnI GCTCC 1 cut(s) 197
Lsp1109I GCAGC 3 cut(s) 108, 217, 466
MaeI CTAG 1 cut(s) 513
MaeII ACGT 4 cut(s) 134, 146, 193, 303
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 68, 428
MboI GATC 2 cut(s) 66, 426
MboII GAAGA 3 cut(s) 61, 108, 179
MflI RGATCY 1 cut(s) 66
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 3 cut(s) 223, 339, 404
MnlI CCTC 8 cut(s) 26, 111, 324, 382, 436, 465, 498, 501
MslI CAYNNNNRTG 1 cut(s) 296
MspA1I CMGCKG 2 cut(s) 208, 367
MspI CCGG 5 cut(s) 104, 109, 254, 269, 419
MspR9I CCNGG 2 cut(s) 254, 420
NciI CCSGG 2 cut(s) 254, 420
NdeII GATC 2 cut(s) 66, 426
NlaIII CATG 3 cut(s) 238, 295, 441
NlaIV GGNNCC 4 cut(s) 113, 199, 342, 488
NspI RCATGY 1 cut(s) 238
PinAI ACCGGT 1 cut(s) 268
PkrI GCNGC 3 cut(s) 123, 207, 481
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Ppu21I YACGTR 2 cut(s) 147, 304
PshAI GACNNNNGTC 1 cut(s) 492
PspN4I GGNNCC 4 cut(s) 113, 199, 342, 488
PspPI GGNCC 2 cut(s) 106, 487
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 1 cut(s) 66
PvuII CAGCTG 1 cut(s) 208
RsaI GTAC 7 cut(s) 51, 113, 145, 149, 302, 335, 517
RsaNI GTAC 7 cut(s) 50, 112, 144, 148, 301, 334, 516
RseI CAYNNNNRTG 1 cut(s) 296
Rsr2I CGGWCCG 1 cut(s) 106
RsrII CGGWCCG 1 cut(s) 106
SatI GCNGC 3 cut(s) 122, 206, 480
Sau3AI GATC 2 cut(s) 66, 426
Sau96I GGNCC 2 cut(s) 106, 487
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 254, 420
SfcI CTRYAG 1 cut(s) 480
SinI GGWCC 2 cut(s) 106, 487
SmiMI CAYNNNNRTG 1 cut(s) 296
SnaBI TACGTA 1 cut(s) 147
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 1 cut(s) 164
SsiI CCGC 3 cut(s) 238, 365, 502
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 252, 418
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 4 cut(s) 137, 149, 196, 306
TaqI TCGA 2 cut(s) 88, 190
TasI AATT 1 cut(s) 164
TatI WGTACW 1 cut(s) 49
TseI GCWGC 3 cut(s) 121, 205, 479
TspDTI ATGAA 2 cut(s) 20, 273
VpaK11BI GGWCC 2 cut(s) 106, 487
XagI CCTNNNNNAGG 1 cut(s) 178
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 238
XspI CTAG 1 cut(s) 513
ZraI GACGTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.