pycom04g07410

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0013139
Physical Location & Seq
Reverse (-)
7892522 .. 7893028
507 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g07410.1

Sequence Viewer

Length: 507 bp
ATGAGAAGAAACAGGGGTTTCAGGCTAAAACACAAGCTAGTGAGGATCTTCAAATGGATGATCCGATCCAGAAAAGACGAGACTCAGTGCCAAAGACTGGATCCTCCAACCCGAACCTACAACCCGATTTCGAAATTCTTCACCTTGGCTCGCTCTCTTCAACGCGGAGCCAAGGAACTCTGCTCCCCAAACTCGGGTTATATTCGGATCCGTGGAGCCCCGGAGGAAACAAAAGCCACGAAACCGGTTGGTGTGCCGAAGGGGCACATGGCTGTGTACGTCGGCGAATCAGACGCTGACACGCATAGGTATTTAGTGCCGGTCTTGTACTTAAATCACCCTCTGTTTGGGGAGCTGTTGAAGGAGGCTGAGAAGGTTTACGGATACAATCATCCGGGTCGGATCGTGATACCTTGTGGGGTTTCGGAGTTTGAGAAAGTGCAGATGAAGATTGCTGCAGGGGACCAGTGCCTACGGCGGAGAAGAAAAAACCGTCGTTATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

169

Amino Acids

19.64

Weight (kDa)

10.31

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 64 - 147 2.3e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 97
AccII CGCG 1 cut(s) 165
AciI CCGC 2 cut(s) 165, 478
AclWI GGATC 8 cut(s) 53, 55, 60, 95, 108, 202, 215, 410
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 2 cut(s) 278, 329
AfiI CCNNNNNNNGG 4 cut(s) 97, 193, 194, 347
AgeI ACCGGT 1 cut(s) 244
AgsI TTSAA 3 cut(s) 52, 161, 361
AluBI AGCT 2 cut(s) 37, 355
AluI AGCT 2 cut(s) 37, 355
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 8 cut(s) 53, 55, 60, 95, 108, 202, 215, 410
AlwNI CAGNNNCTG 1 cut(s) 296
Ama87I CYCGRG 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 134
AsiGI ACCGGT 1 cut(s) 244
Asp700I GAANNNNTTC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 463
AsuC2I CCSGG 2 cut(s) 221, 396
AsuHPI GGTGA 2 cut(s) 133, 329
AsuII TTCGAA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 463
BaeGI GKGCMC 1 cut(s) 267
BamHI GGATCC 2 cut(s) 100, 207
BanII GRGCYC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 491
BciVI GTATCC 1 cut(s) 377
BcnI CCSGG 2 cut(s) 221, 396
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 456
BfuI GTATCC 1 cut(s) 377
BglI GCCNNNNNGGC 1 cut(s) 262
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 2 cut(s) 221, 396
Bme18I GGWCC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 5 cut(s) 102, 169, 209, 217, 464
BmrFI CCNGG 2 cut(s) 221, 396
Bpu14I TTCGAA 1 cut(s) 131
BpuMI CCSGG 2 cut(s) 221, 396
BsaJI CCNNGG 4 cut(s) 144, 171, 211, 219
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 193, 194, 347
Bse118I RCCGGY 2 cut(s) 244, 319
Bse1I ACTGG 2 cut(s) 102, 466
BseDI CCNNGG 4 cut(s) 144, 171, 211, 219
BseGI GGATG 2 cut(s) 63, 391
BseLI CCNNNNNNNGG 4 cut(s) 97, 193, 194, 347
BseMII CTCAG 2 cut(s) 98, 360
BseNI ACTGG 2 cut(s) 102, 466
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 165
BshTI ACCGGT 1 cut(s) 244
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 4 cut(s) 221, 245, 320, 395
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 4 cut(s) 97, 193, 194, 347
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 220, 267
Bsp143I GATC 6 cut(s) 45, 60, 65, 100, 207, 402
BspACI CCGC 2 cut(s) 165, 478
BspCNI CTCAG 2 cut(s) 97, 361
BspFNI CGCG 1 cut(s) 165
BspLI GGNNCC 5 cut(s) 102, 169, 209, 217, 464
BspMAI CTGCAG 1 cut(s) 460
BspPI GGATC 8 cut(s) 53, 55, 60, 95, 108, 202, 215, 410
BspT104I TTCGAA 1 cut(s) 131
BsrFI RCCGGY 2 cut(s) 244, 319
BsrI ACTGG 2 cut(s) 102, 466
BssAI RCCGGY 2 cut(s) 244, 319
BssECI CCNNGG 4 cut(s) 144, 171, 211, 219
BssMI GATC 6 cut(s) 45, 60, 65, 100, 207, 402
BssT1I CCWWGG 2 cut(s) 144, 171
Bst4CI ACNGT 1 cut(s) 494
Bst6I CTCTTC 1 cut(s) 162
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 84, 369
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 2 cut(s) 63, 391
BstFNI CGCG 1 cut(s) 165
BstKTI GATC 6 cut(s) 48, 63, 68, 103, 210, 405
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 6 cut(s) 45, 60, 65, 100, 207, 402
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 219, 394
BstSFI CTRYAG 1 cut(s) 456
BstSLI GKGCMC 1 cut(s) 267
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 442
BstX2I RGATCY 3 cut(s) 45, 100, 207
BstYI RGATCY 3 cut(s) 45, 100, 207
BsuI GTATCC 1 cut(s) 377
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 2 cut(s) 63, 391
BtsIMutI CAGTG 2 cut(s) 92, 473
Cac8I GCNNGC 1 cut(s) 151
CaiI CAGNNNCTG 1 cut(s) 296
Cfr10I RCCGGY 2 cut(s) 244, 319
Cfr13I GGNCC 1 cut(s) 463
CseI GACGC 1 cut(s) 302
Csp6I GTAC 2 cut(s) 277, 328
CspAI ACCGGT 1 cut(s) 244
CviAII CATG 1 cut(s) 268
CviJI RGCY 9 cut(s) 25, 37, 149, 170, 218, 236, 272, 355, 368
CviKI_1 RGCY 9 cut(s) 25, 37, 149, 170, 218, 236, 272, 355, 368
CviQI GTAC 2 cut(s) 277, 328
DdeI CTNAG 2 cut(s) 84, 369
DpnI GATC 6 cut(s) 47, 62, 67, 102, 209, 404
DpnII GATC 6 cut(s) 45, 60, 65, 100, 207, 402
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 144, 171
Eco24I GRGCYC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 463
Eco88I CYCGRG 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 144, 171
EcoT38I GRGCYC 1 cut(s) 220
ErhI CCWWGG 2 cut(s) 144, 171
FaeI CATG 1 cut(s) 271
FaiI YATR 3 cut(s) 201, 269, 306
FaqI GGGAC 1 cut(s) 476
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 2 cut(s) 70, 378
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 38
GluI GCNGC 1 cut(s) 456
HapII CCGG 4 cut(s) 221, 245, 320, 395
HgaI GACGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 271
HinfI GANTC 2 cut(s) 82, 287
HpaII CCGG 4 cut(s) 221, 245, 320, 395
HphI GGTGA 2 cut(s) 133, 329
Hpy166II GTNNAC 2 cut(s) 277, 379
Hpy188I TCNGA 5 cut(s) 65, 207, 292, 402, 427
Hpy188III TCNNGA 2 cut(s) 69, 406
Hpy8I GTNNAC 2 cut(s) 277, 379
Hpy99I CGWCG 2 cut(s) 284, 498
HpyAV CCTTC 3 cut(s) 253, 355, 367
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 442, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 2 cut(s) 84, 369
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 271
Kzo9I GATC 6 cut(s) 45, 60, 65, 100, 207, 402
LmnI GCTCC 4 cut(s) 167, 188, 215, 352
LpnPI CCDG 9 cut(s) 7, 82, 83, 234, 258, 333, 408, 444, 479
Lsp1109I GCAGC 1 cut(s) 442
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 279
MalI GATC 6 cut(s) 47, 62, 67, 102, 209, 404
MboI GATC 6 cut(s) 45, 60, 65, 100, 207, 402
MboII GAAGA 6 cut(s) 18, 40, 130, 149, 460, 495
MflI RGATCY 3 cut(s) 45, 100, 207
MhlI GDGCHC 2 cut(s) 220, 267
MluCI AATT 1 cut(s) 134
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 2 cut(s) 131, 380
MnlI CCTC 5 cut(s) 36, 114, 217, 351, 358
MroXI GAANNNNTTC 1 cut(s) 137
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 4 cut(s) 221, 245, 320, 395
MspR9I CCNGG 2 cut(s) 221, 396
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 2 cut(s) 221, 396
NdeII GATC 6 cut(s) 45, 60, 65, 100, 207, 402
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 5 cut(s) 102, 169, 209, 217, 464
NspV TTCGAA 1 cut(s) 131
PdmI GAANNNNTTC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 97
PinAI ACCGGT 1 cut(s) 244
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 5 cut(s) 102, 169, 209, 217, 464
PspPI GGNCC 1 cut(s) 463
PstI CTGCAG 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 3 cut(s) 45, 100, 207
RsaI GTAC 2 cut(s) 278, 329
RsaNI GTAC 2 cut(s) 277, 328
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 6 cut(s) 45, 60, 65, 100, 207, 402
Sau96I GGNCC 1 cut(s) 463
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 221, 396
SduI GDGCHC 2 cut(s) 220, 267
SetI ASST 8 cut(s) 39, 119, 146, 282, 311, 357, 378, 415
SfcI CTRYAG 1 cut(s) 456
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 165, 478
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 2 cut(s) 219, 394
StyI CCWWGG 2 cut(s) 144, 171
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 1 cut(s) 282
TaqI TCGA 1 cut(s) 131
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 2 cut(s) 92, 473
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 2 cut(s) 200, 396
TspRI CASTG 2 cut(s) 92, 473
Van91I CCANNNNNTGG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 1 cut(s) 134
XmnI GAANNNNTTC 1 cut(s) 137
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.