Prupe.5G076200_v2.0.a1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013139
Physical Location & Seq
Forward (+)
9038680 .. 9039809
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G076200.1

Sequence Viewer

Length: 501 bp
ATGAGAAAGAACAGAGGTTTCAGGCTAAGACACAAGCTAGTGAGAATCTTCAAATGGATTATCCGACCCAGAAAAGACCCGAACCGGTGCCAGAGACTGGAGCCTCCGACCCAAAACTACAACCCCATTTCCAAATTCTTCACCTTGGCTCGGTTTCTTCGGCGTGGAGCAAAGCAGCTCTGTTCCGCAAACTCGGGTTATATTCGGATCCGTGAAGCCCCTGTTGAAACCAAAGTTGCAAAACCGGTTTCTGTACCGAAAGGGCATCTAGCTGTGTACGTGGGCGAATCAGGTGATGACACGCAGAGGTATTTAGTGCCTGTGATGTACTTTAATCACCCGCTGTTTGGGGACCTGTTGAAGGAGGCTGAGAAGGTTTATGGGTTCAATCATCCGGGTCGGATCGTGATACCATGTGAGGTTTCGGAGTTTGAGAAGGTGCAGATGAAGATTGCCGCAGGGGATCAATGCCCAAGGCGGAGAAGGAAAAGCCGTCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

167

Amino Acids

19.44

Weight (kDa)

10.63

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 87
AccB7I CCANNNNNTGG 1 cut(s) 97
AciI CCGC 4 cut(s) 186, 341, 456, 478
AclWI GGATC 4 cut(s) 202, 215, 410, 471
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 3 cut(s) 255, 278, 329
AfiI CCNNNNNNNGG 4 cut(s) 97, 150, 347, 361
AgeI ACCGGT 2 cut(s) 84, 244
AgsI TTSAA 4 cut(s) 52, 227, 361, 388
AluBI AGCT 3 cut(s) 37, 178, 272
AluI AGCT 3 cut(s) 37, 178, 272
Alw26I GTCTC 1 cut(s) 88
AlwI GGATC 4 cut(s) 202, 215, 410, 471
AlwNI CAGNNNCTG 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 134
AsiGI ACCGGT 2 cut(s) 84, 244
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 396
AsuHPI GGTGA 3 cut(s) 133, 305, 329
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 352
BamHI GGATCC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 187
BceAI ACGGC 1 cut(s) 477
BcnI CCSGG 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 3 cut(s) 38, 269, 499
BisI GCNGC 2 cut(s) 176, 456
BlsI GCNGC 2 cut(s) 177, 457
Bme1390I CCNGG 1 cut(s) 396
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 4 cut(s) 89, 102, 209, 353
BmrFI CCNGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 396
BsaAI YACGTR 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 144, 473
BsaWI WCCGGW 2 cut(s) 84, 244
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 150, 347, 361
Bse118I RCCGGY 2 cut(s) 84, 244
Bse1I ACTGG 1 cut(s) 102
BseDI CCNNGG 2 cut(s) 144, 473
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 4 cut(s) 97, 150, 347, 361
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 102
BseXI GCAGC 1 cut(s) 187
BsgI GTGCAG 1 cut(s) 461
BshNI GGYRCC 1 cut(s) 87
BshTI ACCGGT 2 cut(s) 84, 244
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 3 cut(s) 85, 245, 395
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 4 cut(s) 97, 150, 347, 361
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 193
Bsp143I GATC 3 cut(s) 207, 402, 463
BspACI CCGC 4 cut(s) 186, 341, 456, 478
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 4 cut(s) 89, 102, 209, 353
BspPI GGATC 4 cut(s) 202, 215, 410, 471
BspT107I GGYRCC 1 cut(s) 87
BsrFI RCCGGY 2 cut(s) 84, 244
BsrI ACTGG 1 cut(s) 102
BssAI RCCGGY 2 cut(s) 84, 244
BssECI CCNNGG 2 cut(s) 144, 473
BssMI GATC 3 cut(s) 207, 402, 463
BssT1I CCWWGG 2 cut(s) 144, 473
BstBAI YACGTR 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 26, 369
BstENI CCTNNNNNAGG 1 cut(s) 359
BstF5I GGATG 1 cut(s) 391
BstKTI GATC 3 cut(s) 210, 405, 466
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 3 cut(s) 207, 402, 463
BstSCI CCNGG 1 cut(s) 394
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BtsCI GGATG 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 97
Cfr10I RCCGGY 2 cut(s) 84, 244
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 3 cut(s) 254, 277, 328
CspAI ACCGGT 2 cut(s) 84, 244
CviAII CATG 1 cut(s) 414
CviJI RGCY 9 cut(s) 25, 37, 103, 149, 178, 218, 272, 368, 492
CviKI_1 RGCY 9 cut(s) 25, 37, 103, 149, 178, 218, 272, 368, 492
CviQI GTAC 3 cut(s) 254, 277, 328
DdeI CTNAG 2 cut(s) 26, 369
DpnI GATC 3 cut(s) 209, 404, 465
DpnII GATC 3 cut(s) 207, 402, 463
EciI GGCGGA 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 144, 473
Eco47I GGWCC 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 144, 473
ErhI CCWWGG 2 cut(s) 144, 473
FaeI CATG 1 cut(s) 417
FaiI YATR 3 cut(s) 201, 381, 415
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 413
FauI CCCGC 1 cut(s) 348
Fnu4HI GCNGC 2 cut(s) 176, 456
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 2 cut(s) 176, 456
FspBI CTAG 3 cut(s) 38, 269, 499
GluI GCNGC 2 cut(s) 176, 456
GsuI CTGGAG 1 cut(s) 119
HapII CCGG 3 cut(s) 85, 245, 395
Hin1II CATG 1 cut(s) 417
HinfI GANTC 2 cut(s) 45, 287
HpaII CCGG 3 cut(s) 85, 245, 395
HphI GGTGA 3 cut(s) 133, 305, 329
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 5 cut(s) 65, 108, 207, 402, 427
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 4 cut(s) 355, 367, 430, 477
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 239, 442
HpyF3I CTNAG 2 cut(s) 26, 369
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 417
Kzo9I GATC 3 cut(s) 207, 402, 463
LmnI GCTCC 2 cut(s) 100, 167
Lsp1109I GCAGC 1 cut(s) 187
LweI GCATC 1 cut(s) 274
MaeI CTAG 3 cut(s) 38, 269, 499
MaeII ACGT 1 cut(s) 279
MalI GATC 3 cut(s) 209, 404, 465
MboI GATC 3 cut(s) 207, 402, 463
MboII GAAGA 4 cut(s) 40, 130, 149, 460
MflI RGATCY 1 cut(s) 207
MluCI AATT 1 cut(s) 134
MmeI TCCRAC 3 cut(s) 88, 131, 380
MnlI CCTC 5 cut(s) 8, 114, 300, 358, 412
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 3 cut(s) 85, 245, 395
MspR9I CCNGG 1 cut(s) 396
NciI CCSGG 1 cut(s) 396
NdeII GATC 3 cut(s) 207, 402, 463
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 4 cut(s) 89, 102, 209, 353
PfeI GAWTC 2 cut(s) 45, 287
PflMI CCANNNNNTGG 1 cut(s) 97
PinAI ACCGGT 2 cut(s) 84, 244
PkrI GCNGC 2 cut(s) 177, 457
Ppu21I YACGTR 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
PspN4I GGNNCC 4 cut(s) 89, 102, 209, 353
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 3 cut(s) 255, 278, 329
RsaNI GTAC 3 cut(s) 254, 277, 328
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 176, 456
Sau3AI GATC 3 cut(s) 207, 402, 463
Sau96I GGNCC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 396
SfaNI GCATC 1 cut(s) 274
SinI GGWCC 1 cut(s) 352
Sse9I AATT 1 cut(s) 134
SsiI CCGC 4 cut(s) 186, 341, 456, 478
SspMI CTAG 3 cut(s) 38, 269, 499
StyD4I CCNGG 1 cut(s) 394
StyI CCWWGG 2 cut(s) 144, 473
TaiI ACGT 1 cut(s) 282
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 327
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 2 cut(s) 45, 287
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseI GCWGC 1 cut(s) 175
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 352
XagI CCTNNNNNAGG 1 cut(s) 359
XapI RAATTY 1 cut(s) 134
XspI CTAG 3 cut(s) 38, 269, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.