Rh7AG196000

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013139
Physical Location & Seq
Reverse (-)
17577618 .. 17578121
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG196000.1

Sequence Viewer

Length: 504 bp
ATGAAAAAGAGCAGAGGTTTCAGGCTGAGAGTACACAAGCTGGTGAAGATCTTCAAATGGATAGTCCGACCCAGAAGAGAGCCGGCCCGGTACAAGAGGCTGGAATCCCCTGCTGCCAGAACGTACAACCCCATTTCCAAATTCTTCACCTTGGCAAGGTCTCTTCGACGTGGAGCCAAGCAGCTGTGTTTTCCTAACTCGGGTTACATGCGGGTCGGGCAGGCTCCGGAGGAAGGGAAACCGGTGGTTGTTCCGAAGGGGCACATGGCGGTGTATGTGGGGGAGTCGGACGATGACACGCAGAGGTACTTGGTGCCTGTCATATACTTCAATCACCCGCTGTTTGGGGAGCTGTTGAAGGAGGCCGAGAAGGTTTACGGGTTCAACCATCCGGGTCGGATCGTGATACCATGTGGGGCTTCGGAGTTTGAGAAGGTGCAGATGAGGATCGCTGCAGGGGACCATTGTCAATGGCGGAGGAGGAATAGTAACCGTCGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

167

Amino Acids

19.51

Weight (kDa)

10.45

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 66 - 146 2.6e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 4 cut(s) 211, 269, 338, 475
AclWI GGATC 2 cut(s) 407, 455
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 4 cut(s) 33, 92, 125, 308
AfiI CCNNNNNNNGG 4 cut(s) 156, 200, 233, 344
AgeI ACCGGT 1 cut(s) 241
AgsI TTSAA 4 cut(s) 55, 331, 358, 385
AjiI CACGTC 1 cut(s) 170
AluBI AGCT 3 cut(s) 40, 184, 352
AluI AGCT 3 cut(s) 40, 184, 352
Alw26I GTCTC 1 cut(s) 165
AlwI GGATC 2 cut(s) 407, 455
Ama87I CYCGRG 1 cut(s) 199
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 2 cut(s) 84, 363
ApeKI GCWGC 3 cut(s) 113, 181, 452
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AsiGI ACCGGT 1 cut(s) 241
Asp700I GAANNNNTTC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 85, 460
AsuC2I CCSGG 2 cut(s) 88, 393
AsuHPI GGTGA 3 cut(s) 55, 139, 326
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 313
BbvI GCAGC 3 cut(s) 100, 193, 439
BccI CCATC 1 cut(s) 396
BcnI CCSGG 2 cut(s) 88, 393
BcoDI GTCTC 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 453
BglII AGATCT 1 cut(s) 48
BisI GCNGC 3 cut(s) 114, 182, 453
BlsI GCNGC 3 cut(s) 115, 183, 454
Bme1390I CCNGG 2 cut(s) 88, 393
Bme18I GGWCC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 85, 460
BmiI GGNNCC 4 cut(s) 175, 225, 315, 461
BmrFI CCNGG 2 cut(s) 88, 393
BoxI GACNNNNGTC 1 cut(s) 465
BpuMI CCSGG 2 cut(s) 88, 393
BsaBI GATNNNNATC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 2 cut(s) 226, 241
BsaXI ACNNNNNCTCC 2 cut(s) 472, 502
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 200, 233, 344
Bse118I RCCGGY 2 cut(s) 82, 241
Bse8I GATNNNNATC 1 cut(s) 446
BseAI TCCGGA 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 388
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 4 cut(s) 156, 200, 233, 344
BseMII CTCAG 1 cut(s) 17
BseRI GAGGAG 1 cut(s) 493
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 3 cut(s) 100, 193, 439
BsgI GTGCAG 1 cut(s) 458
BshFI GGCC 2 cut(s) 86, 365
BshNI GGYRCC 1 cut(s) 313
BshTI ACCGGT 1 cut(s) 241
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 5 cut(s) 83, 88, 227, 242, 392
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 4 cut(s) 156, 200, 233, 344
BsmAI GTCTC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 2 cut(s) 86, 365
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 3 cut(s) 48, 399, 447
BspACI CCGC 4 cut(s) 211, 269, 338, 475
BspANI GGCC 2 cut(s) 86, 365
BspCNI CTCAG 1 cut(s) 18
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 4 cut(s) 175, 225, 315, 461
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 2 cut(s) 407, 455
BspT107I GGYRCC 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 165
BsrFI RCCGGY 2 cut(s) 82, 241
BssAI RCCGGY 2 cut(s) 82, 241
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 48, 399, 447
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 494
Bst6I CTCTTC 2 cut(s) 70, 168
BstC8I GCNNGC 2 cut(s) 84, 222
BstDEI CTNAG 1 cut(s) 26
BstENI CCTNNNNNAGG 1 cut(s) 154
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 3 cut(s) 51, 402, 450
BstMAI GTCTC 1 cut(s) 165
BstMBI GATC 3 cut(s) 48, 399, 447
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 211
BstPAI GACNNNNGTC 1 cut(s) 465
BstSCI CCNGG 2 cut(s) 86, 391
BstSFI CTRYAG 1 cut(s) 453
BstSLI GKGCMC 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 100, 193, 439
BstX2I RGATCY 1 cut(s) 48
BstYI RGATCY 1 cut(s) 48
BsuRI GGCC 2 cut(s) 86, 365
BtrI CACGTC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 84, 222
Cfr10I RCCGGY 2 cut(s) 82, 241
Cfr13I GGNCC 2 cut(s) 85, 460
Csp6I GTAC 4 cut(s) 32, 91, 124, 307
CspAI ACCGGT 1 cut(s) 241
CviAII CATG 3 cut(s) 208, 265, 411
CviQI GTAC 4 cut(s) 32, 91, 124, 307
DdeI CTNAG 1 cut(s) 26
DpnI GATC 3 cut(s) 50, 401, 449
DpnII GATC 3 cut(s) 48, 399, 447
Eam1104I CTCTTC 2 cut(s) 70, 168
EarI CTCTTC 2 cut(s) 70, 168
EciI GGCGGA 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 199
EcoNI CCTNNNNNAGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 211, 268, 414
FaiI YATR 6 cut(s) 209, 266, 276, 323, 325, 412
FaqI GGGAC 1 cut(s) 473
FatI CATG 3 cut(s) 207, 264, 410
FauI CCCGC 2 cut(s) 204, 345
Fnu4HI GCNGC 3 cut(s) 114, 182, 453
FokI GGATG 1 cut(s) 375
Fsp4HI GCNGC 3 cut(s) 114, 182, 453
GluI GCNGC 3 cut(s) 114, 182, 453
HaeIII GGCC 2 cut(s) 86, 365
HapII CCGG 5 cut(s) 83, 88, 227, 242, 392
Hin1II CATG 3 cut(s) 211, 268, 414
HinfI GANTC 2 cut(s) 104, 284
HpaII CCGG 5 cut(s) 83, 88, 227, 242, 392
HphI GGTGA 3 cut(s) 55, 139, 326
Hpy166II GTNNAC 2 cut(s) 34, 376
Hpy188I TCNGA 5 cut(s) 68, 255, 289, 399, 424
Hpy188III TCNNGA 2 cut(s) 227, 403
Hpy8I GTNNAC 2 cut(s) 34, 376
Hpy99I CGWCG 2 cut(s) 171, 498
HpyAV CCTTC 5 cut(s) 227, 250, 352, 364, 427
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4IV ACGT 2 cut(s) 122, 169
HpyCH4V TGCA 2 cut(s) 439, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 2 cut(s) 122, 169
Hsp92II CATG 3 cut(s) 211, 268, 414
Kpn2I TCCGGA 1 cut(s) 226
KroI GCCGGC 1 cut(s) 82
KroNI GCCGGC 1 cut(s) 84
Kzo9I GATC 3 cut(s) 48, 399, 447
LmnI GCTCC 3 cut(s) 173, 229, 349
Lsp1109I GCAGC 3 cut(s) 100, 193, 439
MaeII ACGT 2 cut(s) 122, 169
MaeIII GTNAC 2 cut(s) 203, 488
MalI GATC 3 cut(s) 50, 401, 449
MboI GATC 3 cut(s) 48, 399, 447
MboII GAAGA 5 cut(s) 43, 58, 87, 136, 155
MflI RGATCY 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 140
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 3 cut(s) 91, 267, 377
MnlI CCTC 8 cut(s) 8, 90, 223, 297, 355, 438, 471, 474
MroI TCCGGA 1 cut(s) 226
MroNI GCCGGC 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 50
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 2 cut(s) 184, 340
MspI CCGG 5 cut(s) 83, 88, 227, 242, 392
MspR9I CCNGG 2 cut(s) 88, 393
MwoI GCNNNNNNNGC 1 cut(s) 217
NaeI GCCGGC 1 cut(s) 84
NciI CCSGG 2 cut(s) 88, 393
NdeII GATC 3 cut(s) 48, 399, 447
NgoMIV GCCGGC 1 cut(s) 82
NlaIII CATG 3 cut(s) 211, 268, 414
NlaIV GGNNCC 4 cut(s) 175, 225, 315, 461
NmeAIII GCCGAG 1 cut(s) 391
NspI RCATGY 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 104
PinAI ACCGGT 1 cut(s) 241
PkrI GCNGC 3 cut(s) 115, 183, 454
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 465
PspN4I GGNNCC 4 cut(s) 175, 225, 315, 461
PspPI GGNCC 2 cut(s) 85, 460
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 1 cut(s) 48
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 4 cut(s) 33, 92, 125, 308
RsaNI GTAC 4 cut(s) 32, 91, 124, 307
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 3 cut(s) 114, 182, 453
Sau3AI GATC 3 cut(s) 48, 399, 447
Sau96I GGNCC 2 cut(s) 85, 460
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 88, 393
SduI GDGCHC 1 cut(s) 264
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 1 cut(s) 140
SsiI CCGC 4 cut(s) 211, 269, 338, 475
StyD4I CCNGG 2 cut(s) 86, 391
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 494
TaiI ACGT 2 cut(s) 125, 172
TaqI TCGA 1 cut(s) 166
TasI AATT 1 cut(s) 140
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 104
TseI GCWGC 3 cut(s) 113, 181, 452
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 460
XagI CCTNNNNNAGG 1 cut(s) 154
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.