AT4G22620

Auxin-responsive family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013139
Physical Location & Seq
Forward (+)
11907355 .. 11908357
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G22620.1

Sequence Viewer

Length: 483 bp
ATGAAGAGGCTCCGAGGTTTTAAGATCGGACACAGATTCGTCAAGATCTTCAAATGGATAATCCGAAGTAGAAGAAACCAAACCGGGAAACGCCAATGCCTGACCGGAATTCTCAACCCGGTTACAAAAATCTACTCTTTAGCACGGCGGTGTCTCCGTCGTGGAGCTAATAGACTGTGCGGAGGAATGAAACCGGGTCAGACCCGGCTTGGTAACGAACCGAAGACGCCGACAGTTCCAAGAGGGCATTTAGTGGTTCATGTCGGTGAATCCGGTGAGGATACGCGACGTGTGGTGGTCCCGGTGATTTATTTTAACCATCCTCTGTTCGGAGAGTTGTTGGAACAGGCAGAGCGGGTTTACGGGTTTGAACAACCGGGTCGGATTATGATACCTTGTCGGGTTTCGGATTTTGAGAAGGTTCAGATGAGGATCGCTGCATGGGACCACTGCCGACGAAAGAGCACTTTTAAGATTCTCTAA

Protein Analysis

160

Amino Acids

18.57

Weight (kDa)

11.18

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 74 - 141 6.9e-19 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013139)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G12410 AT4G22620
fragaria_vesca FvH4_5g00360
malus_domestica MD04G1082600.v1.1
prunus_persica Prupe.5G076200_v2.0.a1 Prupe.8G063100_v2.0.a1
pyrus_communis pycom04g07410
rosa_chinensis RchiOBHm_Chr7g0202161
rosa_laevigata RLG00000003620
rosa_multiflora Rmu_co8306249.1_g000001 Rmu_sc0003823.1_g000018
rosa_roxburghii Rroxscaffold_3G00254790
rosa_rugosa Rorug07G0068700
rosa_samantha Rh7AG196000 Rh7BG197300 Rh7CG207100 Rh7DG202600
rosa_wichuraiana Rw7G017170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 355
AccII CGCG 1 cut(s) 286
AciI CCGC 3 cut(s) 148, 180, 355
AclWI GGATC 1 cut(s) 440
AcsI RAATTY 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 2 cut(s) 52, 371
AjiI CACGTC 1 cut(s) 290
AleI CACNNNNGTG 1 cut(s) 148
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 298, 445
AsuC2I CCSGG 6 cut(s) 85, 119, 195, 205, 302, 378
AsuHPI GGTGA 3 cut(s) 278, 287, 316
AvaII GGWCC 2 cut(s) 298, 445
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 467
BbvI GCAGC 1 cut(s) 424
BccI CCATC 1 cut(s) 327
BceAI ACGGC 1 cut(s) 161
BciVI GTATCC 1 cut(s) 274
BcnI CCSGG 6 cut(s) 85, 119, 195, 205, 302, 378
BcoDI GTCTC 1 cut(s) 158
BfuI GTATCC 1 cut(s) 274
BglII AGATCT 1 cut(s) 45
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 6 cut(s) 85, 119, 195, 205, 302, 378
Bme18I GGWCC 2 cut(s) 298, 445
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 298, 445
BmiI GGNNCC 3 cut(s) 11, 300, 446
BmrFI CCNGG 6 cut(s) 85, 119, 195, 205, 302, 378
BpiI GAAGAC 1 cut(s) 230
BpuMI CCSGG 6 cut(s) 85, 119, 195, 205, 302, 378
BsaBI GATNNNNATC 1 cut(s) 431
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 2 cut(s) 104, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 431
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 431
BseLI CCNNNNNNNGG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 286
BsiHKAI GWGCWC 1 cut(s) 467
BsiSI CCGG 8 cut(s) 84, 105, 119, 194, 205, 273, 302, 377
BslFI GGGAC 2 cut(s) 284, 458
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 2 cut(s) 284, 458
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 3 cut(s) 24, 45, 432
BspACI CCGC 3 cut(s) 148, 180, 355
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 11, 300, 446
BspPI GGATC 1 cut(s) 440
BsrBI CCGCTC 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 3 cut(s) 24, 45, 432
BssNI GRCGYC 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 177, 235
BstACI GRCGYC 1 cut(s) 227
BstF5I GGATG 1 cut(s) 319
BstFNI CGCG 1 cut(s) 286
BstKTI GATC 3 cut(s) 27, 48, 435
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 3 cut(s) 24, 45, 432
BstSCI CCNGG 6 cut(s) 83, 117, 193, 203, 300, 376
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuI GTATCC 1 cut(s) 274
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 448
BtsIMutI CAGTG 1 cut(s) 448
Cfr13I GGNCC 2 cut(s) 298, 445
CseI GACGC 1 cut(s) 235
CviAII CATG 2 cut(s) 260, 441
CviJI RGCY 3 cut(s) 10, 167, 208
CviKI_1 RGCY 3 cut(s) 10, 167, 208
DpnI GATC 3 cut(s) 26, 47, 434
DpnII GATC 3 cut(s) 24, 45, 432
Eco47I GGWCC 2 cut(s) 298, 445
EcoRI GAATTC 1 cut(s) 108
FaeI CATG 2 cut(s) 263, 444
FaiI YATR 3 cut(s) 261, 389, 442
FaqI GGGAC 2 cut(s) 284, 458
FatI CATG 2 cut(s) 259, 440
FauI CCCGC 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 438
GluI GCNGC 1 cut(s) 438
HapII CCGG 8 cut(s) 84, 105, 119, 194, 205, 273, 302, 377
HgaI GACGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 2 cut(s) 263, 444
HinfI GANTC 3 cut(s) 36, 269, 475
HpaII CCGG 8 cut(s) 84, 105, 119, 194, 205, 273, 302, 377
HphI GGTGA 3 cut(s) 278, 287, 316
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 8 cut(s) 14, 29, 65, 201, 332, 384, 409, 426
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 3 cut(s) 162, 291, 459
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 2 cut(s) 177, 235
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 440
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 2 cut(s) 263, 444
Kzo9I GATC 3 cut(s) 24, 45, 432
LmnI GCTCC 2 cut(s) 15, 164
Lsp1109I GCAGC 1 cut(s) 424
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 121, 212
MalI GATC 3 cut(s) 26, 47, 434
MbiI CCGCTC 1 cut(s) 355
MboI GATC 3 cut(s) 24, 45, 432
MboII GAAGA 4 cut(s) 16, 40, 84, 235
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 1 cut(s) 108
MmeI TCCRAC 2 cut(s) 321, 362
MnlI CCTC 6 cut(s) 8, 176, 236, 271, 333, 423
MseI TTAA 3 cut(s) 21, 315, 471
MslI CAYNNNNRTG 2 cut(s) 148, 264
MspI CCGG 8 cut(s) 84, 105, 119, 194, 205, 273, 302, 377
MspR9I CCNGG 6 cut(s) 85, 119, 195, 205, 302, 378
MvnI CGCG 1 cut(s) 286
NciI CCSGG 6 cut(s) 85, 119, 195, 205, 302, 378
NdeII GATC 3 cut(s) 24, 45, 432
NlaIII CATG 2 cut(s) 263, 444
NlaIV GGNNCC 3 cut(s) 11, 300, 446
OliI CACNNNNGTG 1 cut(s) 148
PfeI GAWTC 3 cut(s) 36, 269, 475
PkrI GCNGC 1 cut(s) 439
PspN4I GGNNCC 3 cut(s) 11, 300, 446
PspPI GGNCC 2 cut(s) 298, 445
PsuI RGATCY 1 cut(s) 45
RseI CAYNNNNRTG 2 cut(s) 148, 264
SaqAI TTAA 3 cut(s) 21, 315, 471
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 3 cut(s) 24, 45, 432
Sau96I GGNCC 2 cut(s) 298, 445
ScrFI CCNGG 6 cut(s) 85, 119, 195, 205, 302, 378
SduI GDGCHC 1 cut(s) 467
SetI ASST 5 cut(s) 19, 169, 292, 397, 423
SinI GGWCC 2 cut(s) 298, 445
SmiMI CAYNNNNRTG 2 cut(s) 148, 264
Sse9I AATT 1 cut(s) 108
SsiI CCGC 3 cut(s) 148, 180, 355
StyD4I CCNGG 6 cut(s) 83, 117, 193, 203, 300, 376
TaaI ACNGT 2 cut(s) 177, 235
TaiI ACGT 1 cut(s) 292
TasI AATT 1 cut(s) 108
TfiI GAWTC 3 cut(s) 36, 269, 475
Tru1I TTAA 3 cut(s) 21, 315, 471
Tru9I TTAA 3 cut(s) 21, 315, 471
TscAI CASTG 1 cut(s) 455
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 3 cut(s) 17, 203, 248
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 455
VpaK11BI GGWCC 2 cut(s) 298, 445
XapI RAATTY 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.