AT4G13270

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013103
Physical Location & Seq
Forward (+)
7731189 .. 7733201
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13270.1

Sequence Viewer

Length: 648 bp
ATGGCGTCGTCGAAGCACGAAGACTATGGCATCCCTTACACACCTCTTCCATCATCACAACCATCTCAATCCGTAATCCTTCTAACTCCTTATCGCCGTCACCGTCGTCCTTCACTTCTCCGTAACCTCCGTTGTTCTCTCCTCTTCACCGCCGTAATCCTCCTCCTCTCCGCCGCCGTTTACTTACTCTACCCTTCAGATCCAGACATCACTGTCTCACGAATCAATCTCAACCACATAAGCGTCGTTGATTCTCATAAAATCGCTTTAGATCTCTCGTTTTCGCTCACAATCAAAGTTCGAAACCGAGATTTCTTCTCACTTGATTACGATTCGCTTGTTGTTTCGATTGGGTATAGAGGAAGAGAGTTAGGTCTTGTTAAGTCTAAAGGTGGACATCTTAAAGCTCGTGATAGCTCTTATATTGATGCTACGCTTGAGCTTGATGGTCTTGAGGTTGTTCATGATGTTATTTATTTGATTGGTGATTTGGCTAAAGGTGTTATTCCTTTTGATACTATTGCTCAAGTTCAAGGTGATCTTGGTGTTCTCTTGTTCAATATCCCAATTCAGGGTAAAGTGTCGTGTGAGGTGTATGTTAATGTTAACAACCAGAAAATTTCACACCAAGATTGTCATCGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

215

Amino Acids

23.99

Weight (kDa)

8.39

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 97 - 191 6.7e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13270
fragaria_vesca FvH4_1g04970
malus_domestica MD02G1048400.v1.1 MD15G1186800.v1.1
prunus_persica Prupe.7G229800_v2.0.a1
pyrus_communis pycom02g04060 pycom15g16730
rosa_chinensis RchiOBHm_Chr2g0090601
rosa_laevigata RLG00000016123
rosa_multiflora Rmu_sc0020367.1_g000001 Rmu_sc0040185.1_g000001
rosa_roxburghii Rroxscaffold_2G00151000
rosa_rugosa Rorug02G0009300
rosa_samantha Rh2AG054600 Rh2BG053800 Rh2CG056000 Rh2DG054900
rosa_wichuraiana Rw2G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AciI CCGC 3 cut(s) 150, 171, 174
AclWI GGATC 1 cut(s) 194
AcsI RAATTY 1 cut(s) 618
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 571, 572
AgsI TTSAA 2 cut(s) 533, 559
AluBI AGCT 3 cut(s) 407, 417, 442
AluI AGCT 3 cut(s) 407, 417, 442
Alw26I GTCTC 1 cut(s) 220
AlwI GGATC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 618
AsuHPI GGTGA 4 cut(s) 92, 139, 497, 548
AsuII TTCGAA 1 cut(s) 301
BauI CACGAG 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 3 cut(s) 58, 70, 440
BceAI ACGGC 3 cut(s) 81, 137, 161
BcoDI GTCTC 1 cut(s) 220
BglII AGATCT 1 cut(s) 271
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
BmsI GCATC 2 cut(s) 39, 418
BpiI GAAGAC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 301
BpuEI CTTGAG 3 cut(s) 458, 473, 510
BsaBI GATNNNNATC 1 cut(s) 636
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 571, 572
Bse8I GATNNNNATC 1 cut(s) 636
BseGI GGATG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 2 cut(s) 571, 572
BseRI GAGGAG 3 cut(s) 131, 152, 155
BslI CCNNNNNNNGG 2 cut(s) 571, 572
BsmAI GTCTC 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 301
Bsp143I GATC 3 cut(s) 199, 271, 538
BspACI CCGC 3 cut(s) 150, 171, 174
BspHI TCATGA 1 cut(s) 463
BspPI GGATC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 301
BssMI GATC 3 cut(s) 199, 271, 538
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 408
Bst2BI CACGAG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 104, 214
Bst6I CTCTTC 3 cut(s) 51, 149, 358
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 301
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 3 cut(s) 202, 274, 541
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 3 cut(s) 199, 271, 538
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 2 cut(s) 199, 271
BstYI RGATCY 2 cut(s) 199, 271
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 210
CciI TCATGA 1 cut(s) 463
CseI GACGC 1 cut(s) 232
CviAII CATG 1 cut(s) 464
CviJI RGCY 4 cut(s) 407, 417, 442, 494
CviKI_1 RGCY 4 cut(s) 407, 417, 442, 494
DpnI GATC 3 cut(s) 201, 273, 540
DpnII GATC 3 cut(s) 199, 271, 538
DrdI GACNNNNNNGTC 1 cut(s) 212
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 3 cut(s) 51, 149, 358
EarI CTCTTC 3 cut(s) 51, 149, 358
EciI GGCGGA 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 180
FaeI CATG 1 cut(s) 467
FaiI YATR 7 cut(s) 27, 239, 258, 357, 423, 465, 597
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
HgaI GACGC 1 cut(s) 232
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 467
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 3 cut(s) 222, 251, 332
HpaI GTTAAC 1 cut(s) 607
HphI GGTGA 4 cut(s) 92, 139, 497, 548
Hpy166II GTNNAC 3 cut(s) 181, 395, 607
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 5 cut(s) 203, 219, 410, 452, 464
Hpy8I GTNNAC 3 cut(s) 181, 395, 607
Hpy99I CGWCG 4 cut(s) 10, 13, 108, 248
HpyAV CCTTC 3 cut(s) 89, 120, 204
HpyCH4III ACNGT 2 cut(s) 104, 214
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 467
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 199, 271, 538
LpnPI CCDG 3 cut(s) 216, 557, 626
LweI GCATC 2 cut(s) 39, 418
MaeIII GTNAC 2 cut(s) 98, 122
MalI GATC 3 cut(s) 201, 273, 540
MboI GATC 3 cut(s) 199, 271, 538
MboII GAAGA 5 cut(s) 32, 38, 136, 307, 375
MflI RGATCY 2 cut(s) 199, 271
MluCI AATT 2 cut(s) 567, 618
MnlI CCTC 9 cut(s) 54, 137, 152, 170, 173, 176, 353, 448, 583
MseI TTAA 4 cut(s) 381, 402, 600, 606
NdeII GATC 3 cut(s) 199, 271, 538
NlaIII CATG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 98
NspV TTCGAA 1 cut(s) 301
PagI TCATGA 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PfeI GAWTC 3 cut(s) 222, 251, 332
PkrI GCNGC 1 cut(s) 175
PsuI RGATCY 2 cut(s) 199, 271
SaqAI TTAA 4 cut(s) 381, 402, 600, 606
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 3 cut(s) 199, 271, 538
SfaNI GCATC 2 cut(s) 39, 418
SfuI TTCGAA 1 cut(s) 301
SmlI CTYRAG 3 cut(s) 437, 452, 525
SmoI CTYRAG 3 cut(s) 437, 452, 525
Sse9I AATT 2 cut(s) 567, 618
SsiI CCGC 3 cut(s) 150, 171, 174
TaaI ACNGT 2 cut(s) 104, 214
TaqI TCGA 3 cut(s) 11, 301, 347
TasI AATT 2 cut(s) 567, 618
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 3 cut(s) 222, 251, 332
Tru1I TTAA 4 cut(s) 381, 402, 600, 606
Tru9I TTAA 4 cut(s) 381, 402, 600, 606
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 452
TspGWI ACGGA 3 cut(s) 61, 110, 119
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.