MD15G1186800.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013103
Physical Location & Seq
Forward (+)
14736151 .. 14739253
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1186800.v1.1.491

Sequence Viewer

Length: 762 bp
ATGGCCCACCAAATCAACAACCTAATATTTTGCGTAGAAAATAAACGGGGAAAAAGCCAAAGAAACTCTGTTAAGTCGTCGTCGCGTCTTTACGCTGTTCCAGCAAACATGGCCTCCTCCAAGAGCGAGTACGTATTCTACGCGCCGATCCCGTCTGGCCCCTACAACCCCCAACCTCAGCAAAACGTCGTCGTTCTAACTCATTACCGCCCCACTCCCGACTACTGCTGCCGACGCTCTCTCCGCCTCTACATCTCAATCACCACCTCCCTCCTCCTCCTCTCCGCCGCCGCCTTCTTCCTCTACCCCTCCGACCCCACCGTCCAACTCGCCCGAATTAGCCTCAACCACGTCCGAATCAACGCGGCCCCCAAGCCCACTCTCGACCTCTCCTTCTCTCTCACCATCAGAGTTCGAAATCGCGACTTCTTCTCTCTGAATTACGACTCGCTCAAAGTTACGGTGGGGTACCGCGCGAGGGAGCTAGGGTTTGTGAGCTCCGACGGAGGGCGCGTGAGGGCCAGAGCATCGTCGTACGTGAACGCCACGCTCGTGATCGACGGGCTCGAGGTCCTCCACGACGTGTTCTACTTGCTTGAAGATTTCGCCAAGGGGGTAATTCCCTTTGATACTGATACGGAGGTGGATGGAAGTTTGGGGCTTTTGTTCTTCAAGATTCCGATCAAGGCGAGAGCATCATGTGAAGTATGTGTAGGTACAACCAATCAAACAGTTGTTCGTGAAGACTGCTACTCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

254

Amino Acids

28.27

Weight (kDa)

9.22

Isoelectric Point (pI)

35.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 135 - 229 2.8e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13270
fragaria_vesca FvH4_1g04970
malus_domestica MD02G1048400.v1.1 MD15G1186800.v1.1
prunus_persica Prupe.7G229800_v2.0.a1
pyrus_communis pycom02g04060 pycom15g16730
rosa_chinensis RchiOBHm_Chr2g0090601
rosa_laevigata RLG00000016123
rosa_multiflora Rmu_sc0020367.1_g000001 Rmu_sc0040185.1_g000001
rosa_roxburghii Rroxscaffold_2G00151000
rosa_rugosa Rorug02G0009300
rosa_samantha Rh2AG054600 Rh2BG053800 Rh2CG056000 Rh2DG054900
rosa_wichuraiana Rw2G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 468
AccII CGCG 7 cut(s) 85, 143, 365, 423, 474, 476, 513
AciI CCGC 7 cut(s) 208, 244, 285, 288, 291, 365, 472
AclWI GGATC 1 cut(s) 142
AdeI CACNNNGTG 1 cut(s) 583
AfaI GTAC 4 cut(s) 131, 470, 536, 718
AfiI CCNNNNNNNGG 2 cut(s) 478, 507
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 2 cut(s) 599, 673
AjiI CACGTC 2 cut(s) 352, 583
AleI CACNNNNGTG 1 cut(s) 551
AluBI AGCT 2 cut(s) 484, 498
AluI AGCT 2 cut(s) 484, 498
Alw21I GWGCWC 1 cut(s) 500
AlwI GGATC 1 cut(s) 142
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 5 cut(s) 3, 111, 157, 366, 519
ApeKI GCWGC 1 cut(s) 228
Asp718I GGTACC 1 cut(s) 468
AspLEI GCGC 3 cut(s) 145, 476, 513
AspS9I GGNCC 5 cut(s) 4, 158, 367, 519, 571
AsuHPI GGTGA 2 cut(s) 253, 394
AsuII TTCGAA 1 cut(s) 415
AvaI CYCGRG 1 cut(s) 566
AvaII GGWCC 1 cut(s) 571
BaeI ACNNNNGTAYC 2 cut(s) 627, 660
BanI GGYRCC 1 cut(s) 468
BanII GRGCYC 2 cut(s) 500, 567
BauI CACGAG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 500
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 215
BccI CCATC 2 cut(s) 413, 641
BfaI CTAG 1 cut(s) 485
BisI GCNGC 4 cut(s) 229, 288, 291, 366
BlsI GCNGC 4 cut(s) 230, 289, 292, 367
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 566
BmgBI CACGTC 2 cut(s) 352, 583
BmgT120I GGNCC 5 cut(s) 4, 158, 367, 519, 571
BmiI GGNNCC 3 cut(s) 160, 369, 470
BmsI GCATC 2 cut(s) 536, 704
BpiI GAAGAC 1 cut(s) 750
Bpu10I CCTNAGC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 415
BsaAI YACGTR 2 cut(s) 133, 538
BsaBI GATNNNNATC 1 cut(s) 680
BsaJI CCNNGG 1 cut(s) 609
BsaXI ACNNNNNCTCC 8 cut(s) 98, 128, 225, 255, 473, 498, 503, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 507
Bse8I GATNNNNATC 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 1 cut(s) 652
BseJI GATNNNNATC 1 cut(s) 680
BseLI CCNNNNNNNGG 2 cut(s) 478, 507
BseMII CTCAG 1 cut(s) 191
BseRI GAGGAG 4 cut(s) 106, 263, 266, 269
BseXI GCAGC 1 cut(s) 215
Bsh1236I CGCG 7 cut(s) 85, 143, 365, 423, 474, 476, 513
BshFI GGCC 5 cut(s) 5, 113, 159, 368, 521
BshNI GGYRCC 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 500
BsiHKCI CYCGRG 1 cut(s) 566
BsiWI CGTACG 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 478, 507
BsnI GGCC 5 cut(s) 5, 113, 159, 368, 521
BsoBI CYCGRG 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 415
Bsp1286I GDGCHC 2 cut(s) 500, 567
Bsp143I GATC 3 cut(s) 147, 555, 681
Bsp68I TCGCGA 1 cut(s) 423
BspACI CCGC 7 cut(s) 208, 244, 285, 288, 291, 365, 472
BspANI GGCC 5 cut(s) 5, 113, 159, 368, 521
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 7 cut(s) 85, 143, 365, 423, 474, 476, 513
BspLI GGNNCC 3 cut(s) 160, 369, 470
BspPI GGATC 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 609
BssMI GATC 3 cut(s) 147, 555, 681
BssSI CACGAG 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 551
Bst4CI ACNGT 3 cut(s) 322, 463, 733
BstBAI YACGTR 2 cut(s) 133, 538
BstBI TTCGAA 1 cut(s) 415
BstDEI CTNAG 2 cut(s) 177, 756
BstF5I GGATG 1 cut(s) 652
BstFNI CGCG 7 cut(s) 85, 143, 365, 423, 474, 476, 513
BstHHI GCGC 3 cut(s) 145, 476, 513
BstKTI GATC 3 cut(s) 150, 558, 684
BstMBI GATC 3 cut(s) 147, 555, 681
BstMWI GCNNNNNNNGC 4 cut(s) 101, 110, 234, 243
BstSNI TACGTA 1 cut(s) 133
BstUI CGCG 7 cut(s) 85, 143, 365, 423, 474, 476, 513
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 750
BsuRI GGCC 5 cut(s) 5, 113, 159, 368, 521
BtrI CACGTC 2 cut(s) 352, 583
BtsCI GGATG 1 cut(s) 652
BtuMI TCGCGA 1 cut(s) 423
CfoI GCGC 3 cut(s) 145, 476, 513
Cfr13I GGNCC 5 cut(s) 4, 158, 367, 519, 571
CseI GACGC 2 cut(s) 74, 243
Csp6I GTAC 4 cut(s) 130, 469, 535, 717
CviAII CATG 2 cut(s) 109, 699
CviQI GTAC 4 cut(s) 130, 469, 535, 717
DdeI CTNAG 2 cut(s) 177, 756
DpnI GATC 3 cut(s) 149, 557, 683
DpnII GATC 3 cut(s) 147, 555, 681
DraIII CACNNNGTG 1 cut(s) 583
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EciI GGCGGA 2 cut(s) 233, 274
Ecl136II GAGCTC 1 cut(s) 498
Eco105I TACGTA 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 2 cut(s) 500, 567
Eco47I GGWCC 1 cut(s) 571
Eco53kI GAGCTC 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 2 cut(s) 500, 567
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 2 cut(s) 112, 702
FaiI YATR 3 cut(s) 110, 700, 709
FatI CATG 2 cut(s) 108, 698
Fnu4HI GCNGC 4 cut(s) 229, 288, 291, 366
FokI GGATG 1 cut(s) 659
FriOI GRGCYC 2 cut(s) 500, 567
Fsp4HI GCNGC 4 cut(s) 229, 288, 291, 366
FspBI CTAG 1 cut(s) 485
GlaI GCGC 3 cut(s) 144, 475, 512
GluI GCNGC 4 cut(s) 229, 288, 291, 366
HaeIII GGCC 5 cut(s) 5, 113, 159, 368, 521
HgaI GACGC 2 cut(s) 74, 243
HhaI GCGC 3 cut(s) 145, 476, 513
Hin1II CATG 2 cut(s) 112, 702
Hin6I GCGC 3 cut(s) 143, 474, 511
HinP1I GCGC 3 cut(s) 143, 474, 511
HinfI GANTC 3 cut(s) 357, 446, 676
HphI GGTGA 2 cut(s) 253, 394
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 6 cut(s) 313, 356, 410, 438, 502, 681
Hpy188III TCNNGA 6 cut(s) 218, 383, 422, 553, 673, 740
Hpy8I GTNNAC 1 cut(s) 541
Hpy99I CGWCG 9 cut(s) 82, 85, 191, 194, 237, 506, 535, 563, 584
HpyAV CCTTC 2 cut(s) 304, 403
HpyCH4III ACNGT 3 cut(s) 322, 463, 733
HpyCH4IV ACGT 5 cut(s) 132, 186, 351, 537, 582
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 110, 234, 243
HpyF3I CTNAG 2 cut(s) 177, 756
HpySE526I ACGT 5 cut(s) 132, 186, 351, 537, 582
Hsp92II CATG 2 cut(s) 112, 702
HspAI GCGC 3 cut(s) 143, 474, 511
KpnI GGTACC 1 cut(s) 472
Kzo9I GATC 3 cut(s) 147, 555, 681
LmnI GCTCC 2 cut(s) 481, 503
LpnPI CCDG 3 cut(s) 114, 141, 535
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 2 cut(s) 536, 704
MaeI CTAG 1 cut(s) 485
MaeII ACGT 5 cut(s) 132, 186, 351, 537, 582
MaeIII GTNAC 1 cut(s) 457
MalI GATC 3 cut(s) 149, 557, 683
MboI GATC 3 cut(s) 147, 555, 681
MboII GAAGA 5 cut(s) 289, 421, 611, 661, 755
MhlI GDGCHC 2 cut(s) 500, 567
MluCI AATT 3 cut(s) 336, 439, 618
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 3 cut(s) 336, 349, 525
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 551
MvnI CGCG 7 cut(s) 85, 143, 365, 423, 474, 476, 513
MwoI GCNNNNNNNGC 4 cut(s) 101, 110, 234, 243
NdeII GATC 3 cut(s) 147, 555, 681
NlaIII CATG 2 cut(s) 112, 702
NlaIV GGNNCC 3 cut(s) 160, 369, 470
NruI TCGCGA 1 cut(s) 423
NspV TTCGAA 1 cut(s) 415
OliI CACNNNNGTG 1 cut(s) 551
PaeR7I CTCGAG 1 cut(s) 566
PcsI WCGNNNNNNNCGW 3 cut(s) 510, 549, 564
PfeI GAWTC 2 cut(s) 357, 676
Pfl23II CGTACG 1 cut(s) 534
PkrI GCNGC 4 cut(s) 230, 289, 292, 367
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
Ppu21I YACGTR 2 cut(s) 133, 538
PpuMI RGGWCCY 1 cut(s) 571
Psp124BI GAGCTC 1 cut(s) 500
Psp5II RGGWCCY 1 cut(s) 571
PspLI CGTACG 1 cut(s) 534
PspN4I GGNNCC 3 cut(s) 160, 369, 470
PspPI GGNCC 5 cut(s) 4, 158, 367, 519, 571
PspPPI RGGWCCY 1 cut(s) 571
PspXI VCTCGAGB 1 cut(s) 566
RruI TCGCGA 1 cut(s) 423
RsaI GTAC 4 cut(s) 131, 470, 536, 718
RsaNI GTAC 4 cut(s) 130, 469, 535, 717
RseI CAYNNNNRTG 1 cut(s) 551
SacI GAGCTC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 4 cut(s) 229, 288, 291, 366
Sau3AI GATC 3 cut(s) 147, 555, 681
Sau96I GGNCC 5 cut(s) 4, 158, 367, 519, 571
SchI GAGTC 1 cut(s) 440
SduI GDGCHC 2 cut(s) 500, 567
SfaNI GCATC 2 cut(s) 536, 704
Sfr274I CTCGAG 1 cut(s) 566
SfuI TTCGAA 1 cut(s) 415
SinI GGWCC 1 cut(s) 571
SlaI CTCGAG 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
SnaBI TACGTA 1 cut(s) 133
Sse9I AATT 3 cut(s) 336, 439, 618
SsiI CCGC 7 cut(s) 208, 244, 285, 288, 291, 365, 472
SspI AATATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 485
SstI GAGCTC 1 cut(s) 500
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 3 cut(s) 322, 463, 733
TaiI ACGT 5 cut(s) 135, 189, 354, 540, 585
TaqI TCGA 4 cut(s) 384, 415, 558, 567
TasI AATT 3 cut(s) 336, 439, 618
TauI GCSGC 3 cut(s) 290, 293, 368
TfiI GAWTC 2 cut(s) 357, 676
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseI GCWGC 1 cut(s) 228
TspGWI ACGGA 2 cut(s) 519, 653
VpaK11BI GGWCC 1 cut(s) 571
XhoI CTCGAG 1 cut(s) 566
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.