Prupe.7G229800_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013103
Physical Location & Seq
Reverse (-)
20213271 .. 20214663
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G229800.1

Sequence Viewer

Length: 681 bp
ATGGCCTCCAAGGGCGAGTCTGTATACTATGCTCCGATCCCATCCGACCCGACCCACACCCAATCCCAGCAAACCGTCGTCGTTTTAGCTCCTTACCGTCCCAATCCTAACTACAGGAGACGACGTCGTCTCCGCCTCTGCTTCTCAATCACCGCCTCCCTCCTTCTCCTCTCCACCGCCATCTTCCTCCTCTTCCCCTCCGACCCCACCCTGCAACTCGTTCGGCTCAAACTCAACCACGTCAGAGTCAACTCGTCCCCCAGACCCACTCTCGACCTCTCCTTCTCTCTGACCATCAGAGTGCGAAACCGCGACTTGTTTTCTTTGAACTATGACTCGCTCCGCGTCACGGTGGGGTACCGTGCGAGAGAGCTAGGGTTTGTGAGCTCCGATGGAGGGCGTGTGAGGGCCAGAGGGTCGTCGTACGTGAACGCCACGCTCGTGCTGGACGGGCTTGAAGTCATCCACGACGTGTTTTACTTGCTTGAAGATTTGGCTAGGGGTGTAATACCCTTTGATACTGATACGGAGGTGGAAGGGACTTTGGGGCTCTTTTTCTTCAAAATTCCTATCAAGGCAAAAGCATCATGTGAGGTGTATGTAAATACAAACAATCAGACAATTGTTCGTCAGGACTGCAGCCCTGAGGTGAGGATCCGATTTCTTCTTTCTTGTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

227

Amino Acids

25.49

Weight (kDa)

9.57

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13270
fragaria_vesca FvH4_1g04970
malus_domestica MD02G1048400.v1.1 MD15G1186800.v1.1
prunus_persica Prupe.7G229800_v2.0.a1
pyrus_communis pycom02g04060 pycom15g16730
rosa_chinensis RchiOBHm_Chr2g0090601
rosa_laevigata RLG00000016123
rosa_multiflora Rmu_sc0020367.1_g000001 Rmu_sc0040185.1_g000001
rosa_roxburghii Rroxscaffold_2G00151000
rosa_rugosa Rorug02G0009300
rosa_samantha Rh2AG054600 Rh2BG053800 Rh2CG056000 Rh2DG054900
rosa_wichuraiana Rw2G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 126
AatII GACGTC 1 cut(s) 127
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 312, 345
AciI CCGC 5 cut(s) 133, 153, 177, 310, 343
AclWI GGATC 3 cut(s) 31, 649, 662
AcsI RAATTY 1 cut(s) 564
AcyI GRCGYC 1 cut(s) 124
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 2 cut(s) 359, 425
AfiI CCNNNNNNNGG 2 cut(s) 349, 396
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 4 cut(s) 328, 458, 488, 562
AjiI CACGTC 2 cut(s) 241, 472
AleI CACNNNNGTG 1 cut(s) 440
AluBI AGCT 3 cut(s) 89, 373, 387
AluI AGCT 3 cut(s) 89, 373, 387
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 2 cut(s) 112, 134
AlwI GGATC 3 cut(s) 31, 649, 662
AoxI GGCC 2 cut(s) 3, 408
ApeKI GCWGC 1 cut(s) 639
ApoI RAATTY 1 cut(s) 564
Asp718I GGTACC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 2 cut(s) 142, 661
AxyI CCTNAGG 1 cut(s) 645
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BamHI GGATCC 1 cut(s) 654
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 389, 552
BauI CACGAG 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 651
BccI CCATC 4 cut(s) 49, 188, 302, 386
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BcoDI GTCTC 2 cut(s) 112, 134
BfaI CTAG 3 cut(s) 374, 498, 679
BfmI CTRYAG 2 cut(s) 112, 637
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
BmgBI CACGTC 2 cut(s) 241, 472
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 359, 656
BmsI GCATC 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 9
BsaXI ACNNNNNCTCC 6 cut(s) 109, 114, 139, 144, 387, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 396
Bse21I CCTNAGG 1 cut(s) 645
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 41, 462
BseLI CCNNNNNNNGG 2 cut(s) 349, 396
BseMII CTCAG 1 cut(s) 636
BseRI GAGGAG 2 cut(s) 158, 179
BseXI GCAGC 1 cut(s) 651
BseYI CCCAGC 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 312, 345
BshFI GGCC 2 cut(s) 5, 410
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 1 cut(s) 389
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 3 cut(s) 84, 241, 553
BslI CCNNNNNNNGG 2 cut(s) 349, 396
BsmAI GTCTC 2 cut(s) 112, 134
BsmBI CGTCTC 2 cut(s) 112, 134
BsmFI GGGAC 3 cut(s) 84, 241, 553
BsnI GGCC 2 cut(s) 5, 410
Bsp1286I GDGCHC 2 cut(s) 389, 552
Bsp143I GATC 2 cut(s) 36, 654
BspACI CCGC 5 cut(s) 133, 153, 177, 310, 343
BspANI GGCC 2 cut(s) 5, 410
BspCNI CTCAG 1 cut(s) 637
BspFNI CGCG 2 cut(s) 312, 345
BspLI GGNNCC 2 cut(s) 359, 656
BspMAI CTGCAG 1 cut(s) 641
BspPI GGATC 3 cut(s) 31, 649, 662
BspT107I GGYRCC 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 2 cut(s) 36, 654
BssNAI GTATAC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 124
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 1 cut(s) 9
Bst1107I GTATAC 1 cut(s) 25
Bst2BI CACGAG 1 cut(s) 440
Bst4CI ACNGT 4 cut(s) 76, 98, 352, 362
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 427
BstDEI CTNAG 1 cut(s) 645
BstF5I GGATG 2 cut(s) 41, 462
BstFNI CGCG 2 cut(s) 312, 345
BstKTI GATC 2 cut(s) 39, 657
BstMAI GTCTC 2 cut(s) 112, 134
BstMBI GATC 2 cut(s) 36, 654
BstMWI GCNNNNNNNGC 1 cut(s) 451
BstSFI CTRYAG 2 cut(s) 112, 637
BstUI CGCG 2 cut(s) 312, 345
BstV1I GCAGC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 654
BstYI RGATCY 1 cut(s) 654
BstZ17I GTATAC 1 cut(s) 25
Bsu36I CCTNAGG 1 cut(s) 645
BsuRI GGCC 2 cut(s) 5, 410
BtrI CACGTC 2 cut(s) 241, 472
BtsCI GGATG 2 cut(s) 41, 462
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 334
Csp6I GTAC 2 cut(s) 358, 424
CviAII CATG 1 cut(s) 588
CviQI GTAC 2 cut(s) 358, 424
DdeI CTNAG 1 cut(s) 645
DpnI GATC 2 cut(s) 38, 656
DpnII GATC 2 cut(s) 36, 654
DraIII CACNNNGTG 1 cut(s) 472
DrdI GACNNNNNNGTC 1 cut(s) 126
DseDI GACNNNNNNGTC 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 122
Ecl136II GAGCTC 1 cut(s) 387
Eco130I CCWWGG 1 cut(s) 9
Eco24I GRGCYC 2 cut(s) 389, 552
Eco53kI GAGCTC 1 cut(s) 387
Eco81I CCTNAGG 1 cut(s) 645
EcoICRI GAGCTC 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 9
EcoT38I GRGCYC 2 cut(s) 389, 552
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 2 cut(s) 112, 134
FaeI CATG 1 cut(s) 591
FaiI YATR 5 cut(s) 25, 30, 333, 589, 600
FaqI GGGAC 3 cut(s) 84, 241, 553
FatI CATG 1 cut(s) 587
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 640
FokI GGATG 2 cut(s) 28, 449
FriOI GRGCYC 2 cut(s) 389, 552
Fsp4HI GCNGC 1 cut(s) 640
FspBI CTAG 3 cut(s) 374, 498, 679
GluI GCNGC 1 cut(s) 640
GsaI CCCAGC 1 cut(s) 70
HaeIII GGCC 2 cut(s) 5, 410
HgaI GACGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 1 cut(s) 591
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 3 cut(s) 17, 246, 335
HphI GGTGA 2 cut(s) 142, 661
Hpy166II GTNNAC 3 cut(s) 25, 250, 430
Hpy188I TCNGA 9 cut(s) 36, 46, 202, 245, 291, 299, 391, 618, 659
Hpy188III TCNNGA 2 cut(s) 272, 632
Hpy8I GTNNAC 3 cut(s) 25, 250, 430
Hpy99I CGWCG 6 cut(s) 80, 83, 126, 129, 424, 473
HpyAV CCTTC 3 cut(s) 173, 292, 530
HpyCH4III ACNGT 4 cut(s) 76, 98, 352, 362
HpyCH4IV ACGT 4 cut(s) 124, 240, 426, 471
HpyCH4V TGCA 2 cut(s) 214, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 451
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 4 cut(s) 124, 240, 426, 471
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 1 cut(s) 591
KpnI GGTACC 1 cut(s) 361
Kzo9I GATC 2 cut(s) 36, 654
LmnI GCTCC 4 cut(s) 37, 94, 345, 392
LpnPI CCDG 8 cut(s) 80, 100, 224, 274, 424, 431, 617, 657
Lsp1109I GCAGC 1 cut(s) 651
LweI GCATC 1 cut(s) 593
MaeI CTAG 3 cut(s) 374, 498, 679
MaeII ACGT 4 cut(s) 124, 240, 426, 471
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 38, 656
MboI GATC 2 cut(s) 36, 654
MboII GAAGA 5 cut(s) 175, 184, 500, 550, 656
MfeI CAATTG 1 cut(s) 621
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 2 cut(s) 389, 552
MluCI AATT 2 cut(s) 564, 621
MlyI GAGTC 3 cut(s) 26, 255, 329
MmeI TCCRAC 2 cut(s) 69, 225
MslI CAYNNNNRTG 2 cut(s) 299, 440
MunI CAATTG 1 cut(s) 621
MvnI CGCG 2 cut(s) 312, 345
MwoI GCNNNNNNNGC 1 cut(s) 451
NdeII GATC 2 cut(s) 36, 654
NlaIII CATG 1 cut(s) 591
NlaIV GGNNCC 2 cut(s) 359, 656
NmuCI GTSAC 1 cut(s) 346
OliI CACNNNNGTG 1 cut(s) 440
PcsI WCGNNNNNNNCGW 1 cut(s) 438
Pfl23II CGTACG 1 cut(s) 423
PflFI GACNNNGTC 2 cut(s) 123, 126
PkrI GCNGC 1 cut(s) 641
PleI GAGTC 3 cut(s) 25, 254, 329
PpsI GAGTC 3 cut(s) 25, 254, 329
Ppu21I YACGTR 1 cut(s) 427
Psp124BI GAGCTC 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 66
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 359, 656
PspPI GGNCC 1 cut(s) 408
PstI CTGCAG 1 cut(s) 641
PsuI RGATCY 1 cut(s) 654
PsyI GACNNNGTC 2 cut(s) 123, 126
RsaI GTAC 2 cut(s) 359, 425
RsaNI GTAC 2 cut(s) 358, 424
RseI CAYNNNNRTG 2 cut(s) 299, 440
SacI GAGCTC 1 cut(s) 389
SatI GCNGC 1 cut(s) 640
Sau3AI GATC 2 cut(s) 36, 654
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 3 cut(s) 26, 255, 329
SduI GDGCHC 2 cut(s) 389, 552
SfaNI GCATC 1 cut(s) 593
SfcI CTRYAG 2 cut(s) 112, 637
SmiMI CAYNNNNRTG 2 cut(s) 299, 440
Sse9I AATT 2 cut(s) 564, 621
SsiI CCGC 5 cut(s) 133, 153, 177, 310, 343
SspMI CTAG 3 cut(s) 374, 498, 679
SstI GAGCTC 1 cut(s) 389
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 4 cut(s) 76, 98, 352, 362
TaiI ACGT 4 cut(s) 127, 243, 429, 474
TaqI TCGA 1 cut(s) 273
TasI AATT 2 cut(s) 564, 621
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 639
Tsp45I GTSAC 1 cut(s) 346
TspGWI ACGGA 1 cut(s) 542
Tth111I GACNNNGTC 2 cut(s) 123, 126
XapI RAATTY 1 cut(s) 564
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 3 cut(s) 374, 498, 679
ZraI GACGTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.