Rroxscaffold_2G00151000

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013103
Physical Location & Seq
Reverse (-)
88326483 .. 88328448
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151000.1

Sequence Viewer

Length: 651 bp
ATGAAGAAGACCTCGAAAGGCGAGTCTGCATTCTACGCGCCGATTCCGGCCAACCCCGACCACCCCCAACATGTCGTCGTTTTAACTCATTACCGCGGCCCCTCTCCCGACTACCACGAACGACGTCGTCTCCGCCTCTGCGTATCCACCACCGTCGCTTTCGTCCTCCTCTCCGCCGCCGCGTTCTTCCTCTTCCCCTCCGACCCGGCCCTAGAGCTCGCCCGGATCCACCTCAACCACGTCGGAGTCCACTCGTCGCCGAAGCTCACTCTGGACCTATCGTTCTCGCTGACGATCAGGGTCCGGAATCGTGACTTCTTCTCTCTGGACTACGACTCGCTGGTGGTCAAAATCGGGTACCGGGGGAGAGAGCTAGGGTTTGTGAGCTCGGCCGGCGGGCGCGTGAGGGCCAGAGGGTCGTCGTACGTAAACGCCACGCTCGTGCTGGATGGGCTGGAGGTCATTCACGACGTGTTTTACTTGCTTGAAGATTTGGCTAGGGGTGTGATTCCCTTTGATACTGATACGGAGGTGGATGGAACTGTTGGGCTCTTTTTCTTCAAAATTCCTATCAAGGGAAGAGCTTCTTGTGAGGTGTATGTGAATACAAACAATCAGACAGTTGTTCGTCAAGATTGTTACCCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

216

Amino Acids

24.13

Weight (kDa)

7.79

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 98 - 192 1e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13270
fragaria_vesca FvH4_1g04970
malus_domestica MD02G1048400.v1.1 MD15G1186800.v1.1
prunus_persica Prupe.7G229800_v2.0.a1
pyrus_communis pycom02g04060 pycom15g16730
rosa_chinensis RchiOBHm_Chr2g0090601
rosa_laevigata RLG00000016123
rosa_multiflora Rmu_sc0020367.1_g000001 Rmu_sc0040185.1_g000001
rosa_roxburghii Rroxscaffold_2G00151000
rosa_rugosa Rorug02G0009300
rosa_samantha Rh2AG054600 Rh2BG053800 Rh2CG056000 Rh2DG054900
rosa_wichuraiana Rw2G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 127
Acc65I GGTACC 1 cut(s) 357
AccB1I GGYRCC 1 cut(s) 357
AccII CGCG 4 cut(s) 38, 96, 182, 402
AccIII TCCGGA 1 cut(s) 303
AciI CCGC 7 cut(s) 94, 96, 133, 174, 177, 180, 396
AclWI GGATC 2 cut(s) 220, 233
AcoI YGGCCR 2 cut(s) 48, 390
AcsI RAATTY 1 cut(s) 564
AcyI GRCGYC 1 cut(s) 124
AdeI CACNNNGTG 1 cut(s) 472
AfaI GTAC 2 cut(s) 359, 425
AfiI CCNNNNNNNGG 1 cut(s) 575
AflIII ACRYGT 2 cut(s) 70, 471
AgsI TTSAA 2 cut(s) 488, 562
AjiI CACGTC 2 cut(s) 241, 472
AleI CACNNNNGTG 1 cut(s) 440
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 5 cut(s) 217, 265, 373, 387, 584
AluI AGCT 5 cut(s) 217, 265, 373, 387, 584
Alw21I GWGCWC 2 cut(s) 219, 389
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 220, 233
Aor13HI TCCGGA 1 cut(s) 303
AoxI GGCC 5 cut(s) 48, 97, 207, 390, 408
ApoI RAATTY 1 cut(s) 564
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
Asp700I GAANNNNTTC 1 cut(s) 583
Asp718I GGTACC 1 cut(s) 357
AspLEI GCGC 2 cut(s) 40, 402
AspS9I GGNCC 5 cut(s) 98, 208, 274, 301, 408
AsuC2I CCSGG 3 cut(s) 206, 223, 362
AvaII GGWCC 2 cut(s) 274, 301
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BamHI GGATCC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 3 cut(s) 219, 389, 552
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 219, 389
BccI CCATC 2 cut(s) 443, 530
BciVI GTATCC 1 cut(s) 154
BcnI CCSGG 3 cut(s) 206, 223, 362
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 3 cut(s) 212, 374, 498
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 3 cut(s) 97, 177, 180
BlsI GCNGC 3 cut(s) 98, 178, 181
Bme1390I CCNGG 3 cut(s) 206, 223, 362
Bme18I GGWCC 2 cut(s) 274, 301
BmgBI CACGTC 2 cut(s) 241, 472
BmgT120I GGNCC 5 cut(s) 98, 208, 274, 301, 408
BmiI GGNNCC 4 cut(s) 100, 227, 302, 359
BmrFI CCNGG 3 cut(s) 206, 223, 362
BpiI GAAGAC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 476
BpuMI CCSGG 3 cut(s) 206, 223, 362
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 94, 361
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse118I RCCGGY 1 cut(s) 392
BseAI TCCGGA 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 94, 361
BseGI GGATG 2 cut(s) 454, 541
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 390
Bsh1236I CGCG 4 cut(s) 38, 96, 182, 402
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 5 cut(s) 50, 99, 209, 392, 410
BshNI GGYRCC 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 393
BsiHKAI GWGCWC 2 cut(s) 219, 389
BsiSI CCGG 6 cut(s) 47, 206, 223, 304, 361, 393
BsiWI CGTACG 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 134
BsmBI CGTCTC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 5 cut(s) 50, 99, 209, 392, 410
Bsp1286I GDGCHC 3 cut(s) 219, 389, 552
Bsp13I TCCGGA 1 cut(s) 303
Bsp143I GATC 2 cut(s) 225, 294
BspACI CCGC 7 cut(s) 94, 96, 133, 174, 177, 180, 396
BspANI GGCC 5 cut(s) 50, 99, 209, 392, 410
BspCNI CTCAG 1 cut(s) 637
BspEI TCCGGA 1 cut(s) 303
BspFNI CGCG 4 cut(s) 38, 96, 182, 402
BspLI GGNNCC 4 cut(s) 100, 227, 302, 359
BspPI GGATC 2 cut(s) 220, 233
BspQI GCTCTTC 1 cut(s) 574
BspT107I GGYRCC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 94, 361
BssMI GATC 2 cut(s) 225, 294
BssNI GRCGYC 1 cut(s) 124
BssSI CACGAG 1 cut(s) 440
Bst2BI CACGAG 1 cut(s) 440
Bst4CI ACNGT 3 cut(s) 154, 544, 622
Bst6I CTCTTC 2 cut(s) 197, 574
BstACI GRCGYC 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 219, 394, 398
BstDEI CTNAG 1 cut(s) 645
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 454, 541
BstFNI CGCG 4 cut(s) 38, 96, 182, 402
BstHHI GCGC 2 cut(s) 40, 402
BstKTI GATC 2 cut(s) 228, 297
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 225, 294
BstMCI CGRYCG 1 cut(s) 393
BstMWI GCNNNNNNNGC 3 cut(s) 35, 393, 451
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 204, 221, 360
BstSNI TACGTA 1 cut(s) 427
BstUI CGCG 4 cut(s) 38, 96, 182, 402
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BstZI CGGCCG 1 cut(s) 390
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 5 cut(s) 50, 99, 209, 392, 410
BtgI CCRYGG 1 cut(s) 94
BtrI CACGTC 2 cut(s) 241, 472
BtsCI GGATG 2 cut(s) 454, 541
Cac8I GCNNGC 3 cut(s) 219, 394, 398
CfoI GCGC 2 cut(s) 40, 402
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 5 cut(s) 98, 208, 274, 301, 408
Cfr42I CCGCGG 1 cut(s) 97
Csp6I GTAC 2 cut(s) 358, 424
CviAII CATG 1 cut(s) 71
CviQI GTAC 2 cut(s) 358, 424
DdeI CTNAG 1 cut(s) 645
DpnI GATC 2 cut(s) 227, 296
DpnII GATC 2 cut(s) 225, 294
DraIII CACNNNGTG 1 cut(s) 472
EaeI YGGCCR 2 cut(s) 48, 390
EagI CGGCCG 1 cut(s) 390
Eam1104I CTCTTC 2 cut(s) 197, 574
EarI CTCTTC 2 cut(s) 197, 574
EciI GGCGGA 2 cut(s) 122, 163
Ecl136II GAGCTC 2 cut(s) 217, 387
EclXI CGGCCG 1 cut(s) 390
Eco105I TACGTA 1 cut(s) 427
Eco24I GRGCYC 3 cut(s) 219, 389, 552
Eco47I GGWCC 2 cut(s) 274, 301
Eco52I CGGCCG 1 cut(s) 390
Eco53kI GAGCTC 2 cut(s) 217, 387
EcoICRI GAGCTC 2 cut(s) 217, 387
EcoT38I GRGCYC 3 cut(s) 219, 389, 552
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 1 cut(s) 74
FaiI YATR 2 cut(s) 72, 600
FalI AAGNNNNNCTT 2 cut(s) 571, 603
FatI CATG 1 cut(s) 70
FauI CCCGC 1 cut(s) 389
Fnu4HI GCNGC 3 cut(s) 97, 177, 180
FokI GGATG 2 cut(s) 461, 548
FriOI GRGCYC 3 cut(s) 219, 389, 552
Fsp4HI GCNGC 3 cut(s) 97, 177, 180
FspBI CTAG 3 cut(s) 212, 374, 498
GlaI GCGC 2 cut(s) 39, 401
GluI GCNGC 3 cut(s) 97, 177, 180
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 5 cut(s) 50, 99, 209, 392, 410
HapII CCGG 6 cut(s) 47, 206, 223, 304, 361, 393
HhaI GCGC 2 cut(s) 40, 402
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 1 cut(s) 74
Hin6I GCGC 2 cut(s) 38, 400
HinP1I GCGC 2 cut(s) 38, 400
HinfI GANTC 6 cut(s) 23, 43, 246, 307, 335, 508
HpaII CCGG 6 cut(s) 47, 206, 223, 304, 361, 393
Hpy166II GTNNAC 2 cut(s) 250, 430
Hpy188I TCNGA 3 cut(s) 202, 245, 618
Hpy188III TCNNGA 7 cut(s) 107, 272, 304, 311, 326, 467, 632
Hpy8I GTNNAC 2 cut(s) 250, 430
Hpy99I CGWCG 8 cut(s) 80, 126, 129, 158, 245, 259, 424, 473
HpyCH4III ACNGT 3 cut(s) 154, 544, 622
HpyCH4IV ACGT 4 cut(s) 124, 240, 426, 471
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 393, 451
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 4 cut(s) 124, 240, 426, 471
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 1 cut(s) 74
HspAI GCGC 2 cut(s) 38, 400
Kpn2I TCCGGA 1 cut(s) 303
KpnI GGTACC 1 cut(s) 361
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
KspI CCGCGG 1 cut(s) 97
Kzo9I GATC 2 cut(s) 225, 294
LguI GCTCTTC 1 cut(s) 574
MaeI CTAG 3 cut(s) 212, 374, 498
MaeII ACGT 4 cut(s) 124, 240, 426, 471
MaeIII GTNAC 2 cut(s) 311, 638
MalI GATC 2 cut(s) 227, 296
MboI GATC 2 cut(s) 225, 294
MboII GAAGA 8 cut(s) 16, 19, 178, 184, 310, 500, 550, 591
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 3 cut(s) 219, 389, 552
MluCI AATT 1 cut(s) 564
MlyI GAGTC 3 cut(s) 32, 255, 329
MmeI TCCRAC 2 cut(s) 223, 225
MroI TCCGGA 1 cut(s) 303
MroNI GCCGGC 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 583
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 440
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 6 cut(s) 47, 206, 223, 304, 361, 393
MspR9I CCNGG 3 cut(s) 206, 223, 362
Mva1269I GAATGC 1 cut(s) 29
MvnI CGCG 4 cut(s) 38, 96, 182, 402
MwoI GCNNNNNNNGC 3 cut(s) 35, 393, 451
NaeI GCCGGC 1 cut(s) 394
NciI CCSGG 3 cut(s) 206, 223, 362
NdeII GATC 2 cut(s) 225, 294
NgoMIV GCCGGC 1 cut(s) 392
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 4 cut(s) 100, 227, 302, 359
NmeAIII GCCGAG 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 311
NspI RCATGY 1 cut(s) 74
OliI CACNNNNGTG 1 cut(s) 440
PciI ACATGT 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 574
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 394
PdmI GAANNNNTTC 1 cut(s) 583
PfeI GAWTC 3 cut(s) 43, 307, 508
Pfl23II CGTACG 1 cut(s) 423
PflFI GACNNNGTC 1 cut(s) 126
PkrI GCNGC 3 cut(s) 98, 178, 181
PleI GAGTC 3 cut(s) 31, 254, 329
PpsI GAGTC 3 cut(s) 31, 254, 329
Ppu21I YACGTR 1 cut(s) 427
PscI ACATGT 1 cut(s) 70
Psp124BI GAGCTC 2 cut(s) 219, 389
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 4 cut(s) 100, 227, 302, 359
PspPI GGNCC 5 cut(s) 98, 208, 274, 301, 408
PsuI RGATCY 1 cut(s) 225
PsyI GACNNNGTC 1 cut(s) 126
RsaI GTAC 2 cut(s) 359, 425
RsaNI GTAC 2 cut(s) 358, 424
RseI CAYNNNNRTG 1 cut(s) 440
SacI GAGCTC 2 cut(s) 219, 389
SacII CCGCGG 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 3 cut(s) 97, 177, 180
Sau3AI GATC 2 cut(s) 225, 294
Sau96I GGNCC 5 cut(s) 98, 208, 274, 301, 408
SchI GAGTC 3 cut(s) 32, 255, 329
ScrFI CCNGG 3 cut(s) 206, 223, 362
SduI GDGCHC 3 cut(s) 219, 389, 552
Sfr303I CCGCGG 1 cut(s) 97
SgrBI CCGCGG 1 cut(s) 97
SinI GGWCC 2 cut(s) 274, 301
SmiMI CAYNNNNRTG 1 cut(s) 440
SnaBI TACGTA 1 cut(s) 427
Sse9I AATT 1 cut(s) 564
SsiI CCGC 7 cut(s) 94, 96, 133, 174, 177, 180, 396
SspMI CTAG 3 cut(s) 212, 374, 498
SstI GAGCTC 2 cut(s) 219, 389
StyD4I CCNGG 3 cut(s) 204, 221, 360
TaaI ACNGT 3 cut(s) 154, 544, 622
TaiI ACGT 4 cut(s) 127, 243, 429, 474
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 564
TauI GCSGC 3 cut(s) 99, 179, 182
TfiI GAWTC 3 cut(s) 43, 307, 508
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TseFI GTSAC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 311
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 542
Tth111I GACNNNGTC 1 cut(s) 126
VpaK11BI GGWCC 2 cut(s) 274, 301
XapI RAATTY 1 cut(s) 564
XceI RCATGY 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 583
XspI CTAG 3 cut(s) 212, 374, 498
ZraI GACGTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.