pycom02g04060

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013103
Physical Location & Seq
Forward (+)
2680835 .. 2682819
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04060.1

Sequence Viewer

Length: 654 bp
ATGGCCTCCTCCAAGAGCGAGTACGCATTCTACTCGCCGATCCCATCCGGTCCCAACAACCCAGAGTCTCAGCAAAGCGTCGTCGTTCTAACTCATTACCGTCCCACCCCCCACTACTACTGCGGACGCTCTCTCCGCCTCTGCATCTCAATCACCGCCTCCATACTCCTCCTCTCCGCCGCAGTCTTCTTCCTCTACCCCTCCGATCCCACCCTCCACCTCGCCCGAATCAAACTCAACCATGTCCGAGTCAACACGTCCCTCAAACCCACTCTCGACCTATCCTTCTCTCTCACCATCAGAGTTCGCAACCGCGACTTCTACTCCTTGAATTACGACTCGCTCAAAGTCACGGTGGGGTACCGCGCGAGGGAGCTAGGTTTTGTGATCTCCGACGGAGGGCACGTCAGGGCCAGAGCGTCGTCGTACGTGAACGCCACGCTCGTGGTCGACGGGCTTGAGGTCCTCCACGACGTGTTTTACTTGCTTGAGGATTTGGCGAAAGGGGTAATTCCCTTTGATACCGATACGGCCGTGGATGGAACTTTGGGGGTTTTGCTCTTCAAGATTCCGATCAAGGCAAGAGCATCGTGTGAAGTGTATGTAGATACAAACAATCAGACAGTTGTTCGTGAAGACTGCTATTCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

218

Amino Acids

24.17

Weight (kDa)

7.0

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 99 - 193 5e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13270
fragaria_vesca FvH4_1g04970
malus_domestica MD02G1048400.v1.1 MD15G1186800.v1.1
prunus_persica Prupe.7G229800_v2.0.a1
pyrus_communis pycom02g04060 pycom15g16730
rosa_chinensis RchiOBHm_Chr2g0090601
rosa_laevigata RLG00000016123
rosa_multiflora Rmu_sc0020367.1_g000001 Rmu_sc0040185.1_g000001
rosa_roxburghii Rroxscaffold_2G00151000
rosa_rugosa Rorug02G0009300
rosa_samantha Rh2AG054600 Rh2BG053800 Rh2CG056000 Rh2DG054900
rosa_wichuraiana Rw2G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 360
AccB1I GGYRCC 1 cut(s) 360
AccI GTMKAC 1 cut(s) 450
AccII CGCG 3 cut(s) 315, 366, 368
AciI CCGC 7 cut(s) 123, 136, 156, 177, 180, 313, 364
AclWI GGATC 2 cut(s) 34, 200
AcoI YGGCCR 1 cut(s) 531
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 3 cut(s) 23, 362, 428
AfiI CCNNNNNNNGG 2 cut(s) 370, 399
AflIII ACRYGT 2 cut(s) 255, 474
AgsI TTSAA 2 cut(s) 331, 565
AjiI CACGTC 3 cut(s) 258, 406, 475
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 2 cut(s) 34, 200
AoxI GGCC 3 cut(s) 3, 411, 531
Asp718I GGTACC 1 cut(s) 360
AspLEI GCGC 1 cut(s) 368
AspS9I GGNCC 3 cut(s) 50, 411, 463
AsuHPI GGTGA 2 cut(s) 145, 286
AvaII GGWCC 2 cut(s) 50, 463
BaeGI GKGCMC 1 cut(s) 405
BaeI ACNNNNGTAYC 2 cut(s) 519, 552
BanI GGYRCC 1 cut(s) 360
BauI CACGAG 1 cut(s) 443
BbsI GAAGAC 2 cut(s) 178, 642
BccI CCATC 3 cut(s) 52, 305, 533
BceAI ACGGC 2 cut(s) 518, 546
BcgI CGANNNNNNTGC 4 cut(s) 15, 49, 570, 604
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 377
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 2 cut(s) 50, 463
BmgBI CACGTC 3 cut(s) 258, 406, 475
BmgT120I GGNCC 3 cut(s) 50, 411, 463
BmiI GGNNCC 2 cut(s) 52, 362
BmsI GCATC 2 cut(s) 153, 596
BpiI GAAGAC 2 cut(s) 178, 642
BpuEI CTTGAG 2 cut(s) 479, 509
BsaAI YACGTR 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 534
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 6 cut(s) 117, 147, 308, 338, 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 399
Bse8I GATNNNNATC 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 44, 544
BseJI GATNNNNATC 1 cut(s) 572
BseLI CCNNNNNNNGG 2 cut(s) 370, 399
BseMII CTCAG 2 cut(s) 83, 639
BseRI GAGGAG 2 cut(s) 158, 161
BseSI GKGCMC 1 cut(s) 405
BseX3I CGGCCG 1 cut(s) 531
Bsh1236I CGCG 3 cut(s) 315, 366, 368
Bsh1285I CGRYCG 1 cut(s) 534
BshFI GGCC 3 cut(s) 5, 413, 533
BshNI GGYRCC 1 cut(s) 360
BsiEI CGRYCG 1 cut(s) 534
BsiSI CCGG 1 cut(s) 48
BsiWI CGTACG 1 cut(s) 426
BslFI GGGAC 3 cut(s) 36, 87, 244
BslI CCNNNNNNNGG 2 cut(s) 370, 399
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 3 cut(s) 36, 87, 244
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 3 cut(s) 5, 413, 533
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 4 cut(s) 39, 205, 387, 573
BspACI CCGC 7 cut(s) 123, 136, 156, 177, 180, 313, 364
BspANI GGCC 3 cut(s) 5, 413, 533
BspCNI CTCAG 2 cut(s) 82, 640
BspFNI CGCG 3 cut(s) 315, 366, 368
BspLI GGNNCC 2 cut(s) 52, 362
BspPI GGATC 2 cut(s) 34, 200
BspQI GCTCTTC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 4 cut(s) 39, 205, 387, 573
BssSI CACGAG 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 443
Bst4CI ACNGT 3 cut(s) 101, 355, 625
Bst6I CTCTTC 1 cut(s) 566
BstBAI YACGTR 1 cut(s) 430
BstDEI CTNAG 2 cut(s) 69, 648
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 2 cut(s) 44, 544
BstFNI CGCG 3 cut(s) 315, 366, 368
BstHHI GCGC 1 cut(s) 368
BstKTI GATC 4 cut(s) 42, 208, 390, 576
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 4 cut(s) 39, 205, 387, 573
BstMCI CGRYCG 1 cut(s) 534
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 3 cut(s) 315, 366, 368
BstV2I GAAGAC 2 cut(s) 178, 642
BstXI CCANNNNNNTGG 1 cut(s) 445
BstZI CGGCCG 1 cut(s) 531
BsuRI GGCC 3 cut(s) 5, 413, 533
BtgI CCRYGG 1 cut(s) 534
BtrI CACGTC 3 cut(s) 258, 406, 475
BtsCI GGATG 2 cut(s) 44, 544
CfoI GCGC 1 cut(s) 368
Cfr13I GGNCC 3 cut(s) 50, 411, 463
CseI GACGC 3 cut(s) 67, 135, 408
Csp6I GTAC 3 cut(s) 22, 361, 427
CviAII CATG 1 cut(s) 242
CviJI RGCY 5 cut(s) 5, 376, 413, 457, 533
CviKI_1 RGCY 5 cut(s) 5, 376, 413, 457, 533
CviQI GTAC 3 cut(s) 22, 361, 427
DdeI CTNAG 2 cut(s) 69, 648
DpnI GATC 4 cut(s) 41, 207, 389, 575
DpnII GATC 4 cut(s) 39, 205, 387, 573
DraIII CACNNNGTG 1 cut(s) 475
EaeI YGGCCR 1 cut(s) 531
EagI CGGCCG 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 566
EarI CTCTTC 1 cut(s) 566
EciI GGCGGA 2 cut(s) 125, 166
EclXI CGGCCG 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 50, 463
Eco52I CGGCCG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 463
FaeI CATG 1 cut(s) 245
FaiI YATR 3 cut(s) 164, 243, 603
FaqI GGGAC 3 cut(s) 36, 87, 244
FatI CATG 1 cut(s) 241
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 31, 551
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 367
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 3 cut(s) 5, 413, 533
HapII CCGG 1 cut(s) 48
HgaI GACGC 3 cut(s) 67, 135, 408
HhaI GCGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 245
Hin6I GCGC 1 cut(s) 366
HinP1I GCGC 1 cut(s) 366
HincII GTYRAC 2 cut(s) 253, 451
HindII GTYRAC 2 cut(s) 253, 451
HinfI GANTC 5 cut(s) 65, 228, 249, 338, 568
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 145, 286
Hpy166II GTNNAC 3 cut(s) 253, 433, 451
Hpy188I TCNGA 7 cut(s) 205, 248, 302, 394, 573, 621, 649
Hpy188III TCNNGA 3 cut(s) 275, 565, 632
Hpy8I GTNNAC 3 cut(s) 253, 433, 451
Hpy99I CGWCG 7 cut(s) 83, 86, 398, 424, 427, 455, 476
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 3 cut(s) 101, 355, 625
HpyCH4IV ACGT 4 cut(s) 257, 405, 429, 474
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 2 cut(s) 69, 648
HpySE526I ACGT 4 cut(s) 257, 405, 429, 474
Hsp92II CATG 1 cut(s) 245
HspAI GCGC 1 cut(s) 366
KpnI GGTACC 1 cut(s) 364
Kzo9I GATC 4 cut(s) 39, 205, 387, 573
LguI GCTCTTC 1 cut(s) 566
LmnI GCTCC 1 cut(s) 373
LpnPI CCDG 4 cut(s) 61, 75, 394, 427
LweI GCATC 2 cut(s) 153, 596
MaeI CTAG 1 cut(s) 377
MaeII ACGT 4 cut(s) 257, 405, 429, 474
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 41, 207, 389, 575
MboI GATC 4 cut(s) 39, 205, 387, 573
MboII GAAGA 4 cut(s) 178, 181, 553, 647
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 2 cut(s) 331, 510
MlyI GAGTC 3 cut(s) 74, 258, 332
MmeI TCCRAC 1 cut(s) 417
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 1 cut(s) 48
Mva1269I GAATGC 1 cut(s) 26
MvnI CGCG 3 cut(s) 315, 366, 368
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 4 cut(s) 39, 205, 387, 573
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 2 cut(s) 52, 362
NmuCI GTSAC 1 cut(s) 349
OliI CACNNNNGTG 1 cut(s) 443
PciSI GCTCTTC 1 cut(s) 566
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 441
PctI GAATGC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 228, 568
Pfl23II CGTACG 1 cut(s) 426
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 3 cut(s) 73, 257, 332
PpsI GAGTC 3 cut(s) 73, 257, 332
Ppu21I YACGTR 1 cut(s) 430
PpuMI RGGWCCY 1 cut(s) 463
Psp5II RGGWCCY 1 cut(s) 463
PspLI CGTACG 1 cut(s) 426
PspN4I GGNNCC 2 cut(s) 52, 362
PspPI GGNCC 3 cut(s) 50, 411, 463
PspPPI RGGWCCY 1 cut(s) 463
RsaI GTAC 3 cut(s) 23, 362, 428
RsaNI GTAC 3 cut(s) 22, 361, 427
RseI CAYNNNNRTG 1 cut(s) 443
SalI GTCGAC 1 cut(s) 449
SapI GCTCTTC 1 cut(s) 566
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 4 cut(s) 39, 205, 387, 573
Sau96I GGNCC 3 cut(s) 50, 411, 463
SchI GAGTC 3 cut(s) 74, 258, 332
SduI GDGCHC 1 cut(s) 405
SetI ASST 9 cut(s) 222, 260, 282, 378, 382, 408, 432, 465, 477
SfaNI GCATC 2 cut(s) 153, 596
SinI GGWCC 2 cut(s) 50, 463
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 2 cut(s) 458, 488
SmoI CTYRAG 2 cut(s) 458, 488
Sse9I AATT 2 cut(s) 331, 510
SsiI CCGC 7 cut(s) 123, 136, 156, 177, 180, 313, 364
SspMI CTAG 1 cut(s) 377
TaaI ACNGT 3 cut(s) 101, 355, 625
TaiI ACGT 4 cut(s) 260, 408, 432, 477
TaqI TCGA 2 cut(s) 276, 450
TasI AATT 2 cut(s) 331, 510
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 228, 568
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspGWI ACGGA 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 50, 463
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.