FvH4_1g04970

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013103
Physical Location & Seq
Forward (+)
2646026 .. 2647770
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g04970.t1

Sequence Viewer

Length: 657 bp
ATGAAGAGCTCGAAAGGCGAGTCTGCATTCTACGCGCCGATTCCGGCCAACCCCGATTCGGGCCAACCCCAACAACACGTCGTCGTTTTAACTCACTACCGCCCTTATCGCGACGACTACCTCGAACGACGTCGTTTCCGCCTCTGCGTCTCCACCACCGCCGCGTTCCTCTTCATCTCCGCCGCCGTGTTTTTCCTCTTCCCGTCCGACCCGGCCCTCAGCCTCGCCCGGATCCAGCTCAACCACGTCGGAGTGCACTCGTCGCCGAAGCTCACTCTGGACGCGTCGTTCTCGCTGACCATCAAGGTGCGTAACCGCGACTTCTTCTCTCTGGAGTACGACTCGCTGGTGGTCAAAATCGGGTACCGGGGGAGAGAGCTAGGGTTTGTGAGCTCCGACGGCGGGCGCGTGAGGGCGAGAGGCTCGTCGTACGTGAACGCCACGCTCGTGGTGGATGGGCTGGAGGTGATTCACGACGTGTTTTACTTGCTGGAGGATTTGGCTAGGGGTGAGATTCCGTTTGATACTGATTCCGTGGTGGATGGAACCGTTGGGCTATTCTTCTTCAGAATTCCGATCAAGGGAAGAGCTTCGTGTGAGGTGTATGTGAATACAAACGATCAGACAGTTGTTCGTCAAGATTGTTACCCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

219

Amino Acids

24.44

Weight (kDa)

6.52

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 100 - 194 4.9e-11 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13270
fragaria_vesca FvH4_1g04970
malus_domestica MD02G1048400.v1.1 MD15G1186800.v1.1
prunus_persica Prupe.7G229800_v2.0.a1
pyrus_communis pycom02g04060 pycom15g16730
rosa_chinensis RchiOBHm_Chr2g0090601
rosa_laevigata RLG00000016123
rosa_multiflora Rmu_sc0020367.1_g000001 Rmu_sc0040185.1_g000001
rosa_roxburghii Rroxscaffold_2G00151000
rosa_rugosa Rorug02G0009300
rosa_samantha Rh2AG054600 Rh2BG053800 Rh2CG056000 Rh2DG054900
rosa_wichuraiana Rw2G004730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 133
Acc65I GGTACC 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 363
AccII CGCG 6 cut(s) 35, 111, 164, 284, 318, 408
AciI CCGC 8 cut(s) 100, 139, 159, 162, 180, 183, 316, 402
AclWI GGATC 2 cut(s) 226, 239
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 570
AcuI CTGAAG 1 cut(s) 550
AcyI GRCGYC 1 cut(s) 130
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 3 cut(s) 338, 365, 431
AfiI CCNNNNNNNGG 4 cut(s) 58, 59, 402, 581
AflIII ACRYGT 3 cut(s) 76, 282, 477
AjiI CACGTC 3 cut(s) 79, 247, 478
AleI CACNNNNGTG 1 cut(s) 446
AloI GAACNNNNNNTCC 2 cut(s) 272, 304
AluBI AGCT 6 cut(s) 9, 238, 271, 379, 393, 590
AluI AGCT 6 cut(s) 9, 238, 271, 379, 393, 590
Alw21I GWGCWC 3 cut(s) 11, 258, 395
Alw26I GTCTC 1 cut(s) 154
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 2 cut(s) 226, 239
AoxI GGCC 3 cut(s) 45, 61, 213
ApaLI GTGCAC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 570
ArsI GACNNNNNNTTYG 1 cut(s) 37
Asp700I GAANNNNTTC 1 cut(s) 589
Asp718I GGTACC 1 cut(s) 363
AspLEI GCGC 2 cut(s) 37, 408
AspS9I GGNCC 2 cut(s) 61, 214
AsuC2I CCSGG 3 cut(s) 212, 229, 368
AsuHPI GGTGA 2 cut(s) 478, 521
BaeGI GKGCMC 1 cut(s) 258
BamHI GGATCC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 363
BanII GRGCYC 2 cut(s) 11, 395
BauI CACGAG 1 cut(s) 446
Bbv12I GWGCWC 3 cut(s) 11, 258, 395
BbvCI CCTCAGC 1 cut(s) 218
BccI CCATC 3 cut(s) 308, 449, 536
BceAI ACGGC 2 cut(s) 170, 415
BcnI CCSGG 3 cut(s) 212, 229, 368
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 2 cut(s) 380, 504
BisI GCNGC 2 cut(s) 162, 183
BlsI GCNGC 2 cut(s) 163, 184
Bme1390I CCNGG 3 cut(s) 212, 229, 368
BmgBI CACGTC 3 cut(s) 79, 247, 478
BmgT120I GGNCC 2 cut(s) 61, 214
BmiI GGNNCC 3 cut(s) 233, 365, 547
BmrFI CCNGG 3 cut(s) 212, 229, 368
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 3 cut(s) 353, 482, 512
Bpu10I CCTNAGC 1 cut(s) 218
BpuMI CCSGG 3 cut(s) 212, 229, 368
BsaAI YACGTR 1 cut(s) 433
BsaHI GRCGYC 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 367, 534
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 59, 402, 581
BseDI CCNNGG 2 cut(s) 367, 534
BseGI GGATG 2 cut(s) 460, 547
BseLI CCNNNNNNNGG 4 cut(s) 58, 59, 402, 581
BseMII CTCAG 2 cut(s) 232, 642
BseSI GKGCMC 1 cut(s) 258
Bsh1236I CGCG 6 cut(s) 35, 111, 164, 284, 318, 408
BshFI GGCC 3 cut(s) 47, 63, 215
BshNI GGYRCC 1 cut(s) 363
BsiHKAI GWGCWC 3 cut(s) 11, 258, 395
BsiSI CCGG 4 cut(s) 44, 212, 229, 367
BsiWI CGTACG 1 cut(s) 429
BslI CCNNNNNNNGG 4 cut(s) 58, 59, 402, 581
BsmAI GTCTC 1 cut(s) 154
BsmBI CGTCTC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 3 cut(s) 47, 63, 215
Bsp1286I GDGCHC 3 cut(s) 11, 258, 395
Bsp143I GATC 3 cut(s) 231, 576, 619
Bsp68I TCGCGA 1 cut(s) 111
BspACI CCGC 8 cut(s) 100, 139, 159, 162, 180, 183, 316, 402
BspANI GGCC 3 cut(s) 47, 63, 215
BspCNI CTCAG 2 cut(s) 231, 643
BspFNI CGCG 6 cut(s) 35, 111, 164, 284, 318, 408
BspLI GGNNCC 3 cut(s) 233, 365, 547
BspPI GGATC 2 cut(s) 226, 239
BspQI GCTCTTC 1 cut(s) 580
BspT107I GGYRCC 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 367, 534
BssMI GATC 3 cut(s) 231, 576, 619
BssNI GRCGYC 1 cut(s) 130
BssSI CACGAG 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 446
Bst4CI ACNGT 2 cut(s) 550, 628
Bst6I CTCTTC 3 cut(s) 176, 203, 580
BstACI GRCGYC 1 cut(s) 130
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 2 cut(s) 218, 651
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 2 cut(s) 460, 547
BstFNI CGCG 6 cut(s) 35, 111, 164, 284, 318, 408
BstHHI GCGC 2 cut(s) 37, 408
BstKTI GATC 3 cut(s) 234, 579, 622
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 3 cut(s) 231, 576, 619
BstMWI GCNNNNNNNGC 5 cut(s) 15, 32, 108, 262, 399
BstSCI CCNGG 3 cut(s) 210, 227, 366
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 6 cut(s) 35, 111, 164, 284, 318, 408
BstX2I RGATCY 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 3 cut(s) 47, 63, 215
BtgI CCRYGG 1 cut(s) 534
BtrI CACGTC 3 cut(s) 79, 247, 478
BtsCI GGATG 2 cut(s) 460, 547
BtuMI TCGCGA 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 404
CfoI GCGC 2 cut(s) 37, 408
Cfr13I GGNCC 2 cut(s) 61, 214
CseI GACGC 3 cut(s) 136, 273, 290
Csp6I GTAC 3 cut(s) 337, 364, 430
CviQI GTAC 3 cut(s) 337, 364, 430
DdeI CTNAG 2 cut(s) 218, 651
DpnI GATC 3 cut(s) 233, 578, 621
DpnII GATC 3 cut(s) 231, 576, 619
DraIII CACNNNGTG 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 3 cut(s) 176, 203, 580
EarI CTCTTC 3 cut(s) 176, 203, 580
EciI GGCGGA 2 cut(s) 128, 169
Ecl136II GAGCTC 2 cut(s) 9, 393
Eco24I GRGCYC 2 cut(s) 11, 395
Eco53kI GAGCTC 2 cut(s) 9, 393
Eco57I CTGAAG 1 cut(s) 550
EcoICRI GAGCTC 2 cut(s) 9, 393
EcoRI GAATTC 1 cut(s) 570
EcoT38I GRGCYC 2 cut(s) 11, 395
Esp3I CGTCTC 1 cut(s) 154
FaiI YATR 1 cut(s) 606
FauI CCCGC 1 cut(s) 395
Fnu4HI GCNGC 2 cut(s) 162, 183
FokI GGATG 2 cut(s) 467, 554
FriOI GRGCYC 2 cut(s) 11, 395
Fsp4HI GCNGC 2 cut(s) 162, 183
FspBI CTAG 2 cut(s) 380, 504
GlaI GCGC 2 cut(s) 36, 407
GluI GCNGC 2 cut(s) 162, 183
GsuI CTGGAG 3 cut(s) 353, 482, 512
HaeIII GGCC 3 cut(s) 47, 63, 215
HapII CCGG 4 cut(s) 44, 212, 229, 367
HgaI GACGC 3 cut(s) 136, 273, 290
HhaI GCGC 2 cut(s) 37, 408
Hin1I GRCGYC 1 cut(s) 130
Hin6I GCGC 2 cut(s) 35, 406
HinP1I GCGC 2 cut(s) 35, 406
HinfI GANTC 7 cut(s) 20, 40, 56, 341, 469, 514, 530
HpaII CCGG 4 cut(s) 44, 212, 229, 367
HphI GGTGA 2 cut(s) 478, 521
Hpy166II GTNNAC 2 cut(s) 256, 436
Hpy188I TCNGA 6 cut(s) 208, 251, 397, 569, 576, 624
Hpy188III TCNNGA 5 cut(s) 110, 278, 332, 473, 638
Hpy8I GTNNAC 2 cut(s) 256, 436
HpyCH4III ACNGT 2 cut(s) 550, 628
HpyCH4IV ACGT 5 cut(s) 78, 130, 246, 432, 477
HpyCH4V TGCA 2 cut(s) 26, 256
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 32, 108, 262, 399
HpyF3I CTNAG 2 cut(s) 218, 651
HpySE526I ACGT 5 cut(s) 78, 130, 246, 432, 477
Hsp92I GRCGYC 1 cut(s) 130
HspAI GCGC 2 cut(s) 35, 406
KpnI GGTACC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 231, 576, 619
LguI GCTCTTC 1 cut(s) 580
LmnI GCTCC 1 cut(s) 398
MaeI CTAG 2 cut(s) 380, 504
MaeII ACGT 5 cut(s) 78, 130, 246, 432, 477
MaeIII GTNAC 2 cut(s) 311, 644
MalI GATC 3 cut(s) 233, 578, 621
MboI GATC 3 cut(s) 231, 576, 619
MboII GAAGA 7 cut(s) 16, 163, 190, 316, 553, 556, 597
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 3 cut(s) 11, 258, 395
MluCI AATT 1 cut(s) 570
MluI ACGCGT 1 cut(s) 282
MlyI GAGTC 2 cut(s) 29, 335
MmeI TCCRAC 3 cut(s) 229, 231, 420
MroXI GAANNNNTTC 1 cut(s) 589
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 2 cut(s) 305, 446
MspI CCGG 4 cut(s) 44, 212, 229, 367
MspR9I CCNGG 3 cut(s) 212, 229, 368
Mva1269I GAATGC 1 cut(s) 26
MvnI CGCG 6 cut(s) 35, 111, 164, 284, 318, 408
MwoI GCNNNNNNNGC 5 cut(s) 15, 32, 108, 262, 399
NciI CCSGG 3 cut(s) 212, 229, 368
NdeII GATC 3 cut(s) 231, 576, 619
NlaIV GGNNCC 3 cut(s) 233, 365, 547
NruI TCGCGA 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 580
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 405, 444
PctI GAATGC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 5 cut(s) 40, 56, 469, 514, 530
Pfl23II CGTACG 1 cut(s) 429
PkrI GCNGC 2 cut(s) 163, 184
PleI GAGTC 2 cut(s) 28, 335
PpsI GAGTC 2 cut(s) 28, 335
Ppu21I YACGTR 1 cut(s) 433
Psp124BI GAGCTC 2 cut(s) 11, 395
PspLI CGTACG 1 cut(s) 429
PspN4I GGNNCC 3 cut(s) 233, 365, 547
PspPI GGNCC 2 cut(s) 61, 214
PsuI RGATCY 1 cut(s) 231
RruI TCGCGA 1 cut(s) 111
RsaI GTAC 3 cut(s) 338, 365, 431
RsaNI GTAC 3 cut(s) 337, 364, 430
RseI CAYNNNNRTG 2 cut(s) 305, 446
SacI GAGCTC 2 cut(s) 11, 395
SapI GCTCTTC 1 cut(s) 580
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 2 cut(s) 162, 183
Sau3AI GATC 3 cut(s) 231, 576, 619
Sau96I GGNCC 2 cut(s) 61, 214
SchI GAGTC 2 cut(s) 29, 335
ScrFI CCNGG 3 cut(s) 212, 229, 368
SduI GDGCHC 3 cut(s) 11, 258, 395
SmiMI CAYNNNNRTG 2 cut(s) 305, 446
Sse9I AATT 1 cut(s) 570
SsiI CCGC 8 cut(s) 100, 139, 159, 162, 180, 183, 316, 402
SspMI CTAG 2 cut(s) 380, 504
SstI GAGCTC 2 cut(s) 11, 395
StyD4I CCNGG 3 cut(s) 210, 227, 366
TaaI ACNGT 2 cut(s) 550, 628
TaiI ACGT 5 cut(s) 81, 133, 249, 435, 480
TaqI TCGA 2 cut(s) 11, 123
TasI AATT 1 cut(s) 570
TauI GCSGC 2 cut(s) 164, 185
TfiI GAWTC 5 cut(s) 40, 56, 469, 514, 530
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 17, 163
TspGWI ACGGA 2 cut(s) 507, 523
VneI GTGCAC 1 cut(s) 254
XapI RAATTY 1 cut(s) 570
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmnI GAANNNNTTC 1 cut(s) 589
XspI CTAG 2 cut(s) 380, 504
ZraI GACGTC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.