AT4G13600

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014577
Physical Location & Seq
Reverse (-)
7911019 .. 7912892
1874 bp
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UTR
Exon/CDS
Intron
AT4G13600.1

Sequence Viewer

Length: 696 bp
ATGAAAAGAAAAGAGAAAACAAAGCAAAAGCAAAAGAGAGTGAGAGAGGTAAGGCTCCACACTCAAACTCTTCACTCTCACTCCTTCCTTTCCTTTCTCTCTTACCACTTCCCAATGGCTCTCTGTCTCCAAACTCTCTCCTTCCTCCTCCTTCTTCTCTTCCGTTCCTCCGCTGCGATGTGGTGCGTTGCTCGGTTCGATGTTACGAGCCAAGCGCTTCAGGCGGCTCTAGACTACGCATGTGCCGCTGGAGCTGACTGTGCTCCAATCCAACCCAATGGTCTCTGTTTTCTCCCTAACACCGTTCAGGCACACGCATCTTACGCTTTCAATAGCTACTTCCAACGTGCAGCCATGGCTCCTGGCTCATGTAACTTCGCTGGCACATCCACTATCGCCAAAACCGATCCTAGTTATGGATCATGCGTGTATCCAAATTCTGTGCGTAACGCTGGAGGGTCAGCTTCAACTACCACAGTGGGAGGAACGCCGTCAACAACCGTCGGAAACAGCCCAATGACGACATTGAGGCCACCGTCTGGCACCACGACATCACCGTTTGGAATAGGTGGCGGTGGGCTTAATCCACAAGGAACCACTACTACAACTAACACCGATGAATCTGGATCTTATATAATAAACAAGAGTACTGTCTCTATAGCTTTATTTGTGGCCTTACTGTTGTGGTTTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

231

Amino Acids

24.6

Weight (kDa)

9.4

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 61 - 130 2.6e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13600
fragaria_vesca FvH4_4g16510 FvH4_4g16510
malus_domestica MD04G1009500.v1.1
prunus_persica Prupe.1G008800_v2.0.a1
pyrus_communis pycom04g00730
rosa_chinensis RchiOBHm_Chr4g0415121
rosa_laevigata RLG00000008096
rosa_multiflora Rmu_sc0000635.1_g000003 Rmu_sc0003748.1_g000016
rosa_roxburghii Rroxscaffold_5G00358920
rosa_rugosa Rorug04G0132400
rosa_samantha Rh4AG192200 Rh4BG190300 Rh4CG203000 Rh4DG190100
rosa_wichuraiana Rw4G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 542
AccB7I CCANNNNNTGG 1 cut(s) 539
AciI CCGC 4 cut(s) 171, 224, 246, 573
AclWI GGATC 3 cut(s) 401, 427, 634
AcsI RAATTY 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 649
AfeI AGCGCT 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 416, 539
AgsI TTSAA 2 cut(s) 331, 468
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 4 cut(s) 254, 336, 464, 662
AluI AGCT 4 cut(s) 254, 336, 464, 662
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 3 cut(s) 131, 287, 658
AlwI GGATC 3 cut(s) 401, 427, 634
Aor51HI AGCGCT 1 cut(s) 216
AoxI GGCC 2 cut(s) 530, 672
ApeKI GCWGC 2 cut(s) 173, 350
ApoI RAATTY 1 cut(s) 436
AspLEI GCGC 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 546
BanI GGYRCC 1 cut(s) 542
Bbv12I GWGCWC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 160, 362
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 363
BciVI GTATCC 1 cut(s) 441
BcoDI GTCTC 3 cut(s) 131, 287, 658
BfaI CTAG 2 cut(s) 230, 411
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 1 cut(s) 218
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 4 cut(s) 174, 225, 246, 351
BlsI GCNGC 4 cut(s) 175, 226, 247, 352
BmcAI AGTACT 1 cut(s) 649
Bme1390I CCNGG 1 cut(s) 363
BmiI GGNNCC 4 cut(s) 56, 360, 544, 595
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 326
BpmI CTGGAG 2 cut(s) 270, 474
BsaI GGTCTC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 354
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 416, 539
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 2 cut(s) 416, 539
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 160, 362
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 2 cut(s) 532, 674
BshNI GGYRCC 1 cut(s) 542
BsiHKAI GWGCWC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 416, 539
BsmAI GTCTC 3 cut(s) 131, 287, 658
BsnI GGCC 2 cut(s) 532, 674
Bso31I GGTCTC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 3 cut(s) 406, 419, 626
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 4 cut(s) 171, 224, 246, 573
BspANI GGCC 2 cut(s) 532, 674
BspLI GGNNCC 4 cut(s) 56, 360, 544, 595
BspPI GGATC 3 cut(s) 401, 427, 634
BspT107I GGYRCC 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 3 cut(s) 406, 419, 626
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 8 cut(s) 260, 304, 478, 502, 537, 558, 652, 681
Bst6I CTCTTC 2 cut(s) 75, 164
BstC8I GCNNGC 1 cut(s) 382
BstDSI CCRYGG 1 cut(s) 354
BstF5I GGATG 1 cut(s) 386
BstH2I RGCGCY 1 cut(s) 218
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 3 cut(s) 409, 422, 629
BstMAI GTCTC 3 cut(s) 131, 287, 658
BstMBI GATC 3 cut(s) 406, 419, 626
BstMWI GCNNNNNNNGC 6 cut(s) 221, 245, 251, 260, 323, 356
BstNI CCWGG 1 cut(s) 363
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 160, 362
BstX2I RGATCY 1 cut(s) 626
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 1 cut(s) 626
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 2 cut(s) 532, 674
BtgI CCRYGG 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 382
CfoI GCGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 648
CviAII CATG 4 cut(s) 240, 355, 369, 423
CviQI GTAC 1 cut(s) 648
DpnI GATC 3 cut(s) 408, 421, 628
DpnII GATC 3 cut(s) 406, 419, 626
Eam1104I CTCTTC 2 cut(s) 75, 164
EarI CTCTTC 2 cut(s) 75, 164
Eco130I CCWWGG 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 287
Eco47III AGCGCT 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 4 cut(s) 243, 358, 372, 426
FatI CATG 4 cut(s) 239, 354, 368, 422
Fnu4HI GCNGC 4 cut(s) 174, 225, 246, 351
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 4 cut(s) 174, 225, 246, 351
FspBI CTAG 2 cut(s) 230, 411
GlaI GCGC 1 cut(s) 216
GluI GCNGC 4 cut(s) 174, 225, 246, 351
GsuI CTGGAG 2 cut(s) 270, 474
HaeII RGCGCY 1 cut(s) 218
HaeIII GGCC 2 cut(s) 532, 674
HhaI GCGC 1 cut(s) 217
Hin1II CATG 4 cut(s) 243, 358, 372, 426
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 495
HindII GTYRAC 1 cut(s) 495
HinfI GANTC 1 cut(s) 620
HphI GGTGA 1 cut(s) 546
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 1 cut(s) 506
Hpy188III TCNNGA 2 cut(s) 230, 624
Hpy8I GTNNAC 1 cut(s) 495
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 3 cut(s) 94, 151, 161
HpyCH4III ACNGT 8 cut(s) 260, 304, 478, 502, 537, 558, 652, 681
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 1 cut(s) 350
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 245, 251, 260, 323, 356
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 4 cut(s) 243, 358, 372, 426
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 3 cut(s) 406, 419, 626
LmnI GCTCC 4 cut(s) 60, 251, 268, 364
LpnPI CCDG 9 cut(s) 206, 234, 293, 348, 366, 375, 438, 525, 609
Lsp1109I GCAGC 2 cut(s) 160, 362
LweI GCATC 1 cut(s) 326
MaeI CTAG 2 cut(s) 230, 411
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 3 cut(s) 202, 371, 446
MalI GATC 3 cut(s) 408, 421, 628
MboI GATC 3 cut(s) 406, 419, 626
MboII GAAGA 3 cut(s) 62, 146, 151
MflI RGATCY 1 cut(s) 626
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 1 cut(s) 436
MmeI TCCRAC 3 cut(s) 295, 367, 484
MnlI CCTC 7 cut(s) 40, 155, 158, 178, 449, 476, 522
MseI TTAA 1 cut(s) 582
MspA1I CMGCKG 2 cut(s) 173, 248
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MwoI GCNNNNNNNGC 6 cut(s) 221, 245, 251, 260, 323, 356
NcoI CCATGG 1 cut(s) 354
NdeII GATC 3 cut(s) 406, 419, 626
NlaIII CATG 4 cut(s) 243, 358, 372, 426
NlaIV GGNNCC 4 cut(s) 56, 360, 544, 595
NspI RCATGY 1 cut(s) 243
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 554
PfeI GAWTC 1 cut(s) 620
PflMI CCANNNNNTGG 1 cut(s) 539
PkrI GCNGC 4 cut(s) 175, 226, 247, 352
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 4 cut(s) 56, 360, 544, 595
PsrI GAACNNNNNNTAC 2 cut(s) 586, 618
PsuI RGATCY 1 cut(s) 626
RsaI GTAC 1 cut(s) 649
RsaNI GTAC 1 cut(s) 648
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 4 cut(s) 174, 225, 246, 351
Sau3AI GATC 3 cut(s) 406, 419, 626
ScaI AGTACT 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 265
SetI ASST 7 cut(s) 51, 256, 338, 349, 466, 571, 664
SfaNI GCATC 1 cut(s) 326
SfcI CTRYAG 1 cut(s) 657
Sse9I AATT 1 cut(s) 436
SsiI CCGC 4 cut(s) 171, 224, 246, 573
SspMI CTAG 2 cut(s) 230, 411
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 8 cut(s) 260, 304, 478, 502, 537, 558, 652, 681
TaiI ACGT 1 cut(s) 349
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 436
TatI WGTACW 1 cut(s) 647
TauI GCSGC 2 cut(s) 227, 248
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 1 cut(s) 483
TseI GCWGC 2 cut(s) 173, 350
TspDTI ATGAA 2 cut(s) 17, 633
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 1 cut(s) 483
Van91I CCANNNNNTGG 1 cut(s) 539
XapI RAATTY 1 cut(s) 436
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 1 cut(s) 243
XspI CTAG 2 cut(s) 230, 411
ZrmI AGTACT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.