Prupe.1G008800_v2.0.a1

Glucan endo-1,3-beta-glucosidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014577
Physical Location & Seq
Forward (+)
718804 .. 721779
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G008800.1

Sequence Viewer

Length: 639 bp
ATGGCATCATTCTCACACTCAAAGCAGCTAAGCTCTCTGTTCCTGGTAATATCCATGGTGGGTATGCTTGGAACTTTCATCAATATTGTGGGGGTAGATGGAGCAACTGCTTCTTCTTCTTCTTCTTCTTCTTCAACTTGGTGTGTGGCAAGAAGTGATGCTACCACCCAAGCCCTTCAGACAGGCTTAGACTATGCATGCGGGGCTGGTGCTGACTGTTCCCCATTACAATCCACTGGCCTCTGTTATCTTCCAAACACAATCCAAGCTCATGCCTCTTATGCCTTCAACAGTTATTATCAGCGCAAGGCTATGGCTCCTGGCTCTTGTGACTTCGCTGGCACTTCCACCATTGCTCAAACCGATCCCAGTTATGGATCTTGTGTGTACCCATCTTCTGCAAGCACGGCTGGAGGGACAGCTACACCAACCACGCCACCAGCTACAGGCATTTTCAGTGCACCAACAACGCCTACGACACCAACATTTGGCGGGGGTAGCGTTACTGGATTCACTCCGGGAATGACCCCGACGATCCCTGACTCTGACGACAACTCAAAAGCATCCCTGGAGTCCATGATCCCAACAATCTTGATGCATGTGTCCTTCATGTTTGTTCTTTCATTTACCCTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

213

Amino Acids

21.65

Weight (kDa)

4.68

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13600
fragaria_vesca FvH4_4g16510 FvH4_4g16510
malus_domestica MD04G1009500.v1.1
prunus_persica Prupe.1G008800_v2.0.a1
pyrus_communis pycom04g00730
rosa_chinensis RchiOBHm_Chr4g0415121
rosa_laevigata RLG00000008096
rosa_multiflora Rmu_sc0000635.1_g000003 Rmu_sc0003748.1_g000016
rosa_roxburghii Rroxscaffold_5G00358920
rosa_rugosa Rorug04G0132400
rosa_samantha Rh4AG192200 Rh4BG190300 Rh4CG203000 Rh4DG190100
rosa_wichuraiana Rw4G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 488
AciI CCGC 2 cut(s) 201, 492
AclWI GGATC 4 cut(s) 359, 385, 529, 574
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 3 cut(s) 374, 446, 488
AgsI TTSAA 2 cut(s) 135, 289
AjnI CCWGG 3 cut(s) 42, 319, 567
AluBI AGCT 5 cut(s) 28, 33, 269, 422, 443
AluI AGCT 5 cut(s) 28, 33, 269, 422, 443
Alw21I GWGCWC 1 cut(s) 463
Alw44I GTGCAC 1 cut(s) 459
AlwI GGATC 4 cut(s) 359, 385, 529, 574
AoxI GGCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 459
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 463
BarI GAAGNNNNNNTAC 2 cut(s) 145, 177
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 92, 400
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 3 cut(s) 44, 321, 569
BcnI CCSGG 1 cut(s) 519
BfmI CTRYAG 1 cut(s) 444
BisI GCNGC 1 cut(s) 26
BlpI GCTNAGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 27
Bme1390I CCNGG 4 cut(s) 44, 321, 519, 569
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 4 cut(s) 44, 321, 519, 569
BmrI ACTGGG 1 cut(s) 363
BmsI GCATC 4 cut(s) 14, 148, 572, 585
BmuI ACTGGG 1 cut(s) 363
BpmI CTGGAG 2 cut(s) 432, 590
Bpu1102I GCTNAGC 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 54, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 374, 446, 488
Bse1I ACTGG 3 cut(s) 241, 369, 511
Bse3DI GCAATG 1 cut(s) 351
BseBI CCWGG 3 cut(s) 44, 321, 569
BseDI CCNNGG 2 cut(s) 54, 567
BseGI GGATG 1 cut(s) 563
BseLI CCNNNNNNNGG 3 cut(s) 374, 446, 488
BseMI GCAATG 1 cut(s) 351
BseNI ACTGG 3 cut(s) 241, 369, 511
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 3 cut(s) 374, 446, 488
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 4 cut(s) 364, 377, 534, 579
Bsp1720I GCTNAGC 1 cut(s) 29
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 2 cut(s) 201, 492
BspANI GGCC 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 4 cut(s) 359, 385, 529, 574
BsrDI GCAATG 1 cut(s) 351
BsrI ACTGG 3 cut(s) 241, 369, 511
BssECI CCNNGG 2 cut(s) 54, 567
BssMI GATC 4 cut(s) 364, 377, 534, 579
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 3 cut(s) 44, 321, 569
Bst4CI ACNGT 2 cut(s) 218, 293
BstC8I GCNNGC 3 cut(s) 199, 340, 403
BstDEI CTNAG 2 cut(s) 29, 187
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 563
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 4 cut(s) 367, 380, 537, 582
BstMBI GATC 4 cut(s) 364, 377, 534, 579
BstMWI GCNNNNNNNGC 4 cut(s) 203, 281, 407, 498
BstNI CCWGG 3 cut(s) 44, 321, 569
BstNSI RCATGY 2 cut(s) 201, 602
BstSCI CCNGG 4 cut(s) 42, 319, 517, 567
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 463
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 377
BstYI RGATCY 1 cut(s) 377
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 563
BtsIMutI CAGTG 2 cut(s) 234, 463
Cac8I GCNNGC 3 cut(s) 199, 340, 403
CfoI GCGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 388
CviAII CATG 6 cut(s) 55, 198, 272, 577, 599, 610
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 29, 187
DpnI GATC 4 cut(s) 366, 379, 536, 581
DpnII GATC 4 cut(s) 364, 377, 534, 579
Eco130I CCWWGG 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 161
EcoRII CCWGG 3 cut(s) 42, 319, 567
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 2 cut(s) 199, 600
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 6 cut(s) 58, 201, 275, 580, 602, 613
FaqI GGGAC 1 cut(s) 430
FatI CATG 6 cut(s) 54, 197, 271, 576, 598, 609
FauI CCCGC 2 cut(s) 194, 485
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 550
Fsp4HI GCNGC 1 cut(s) 26
GlaI GCGC 1 cut(s) 305
GluI GCNGC 1 cut(s) 26
GsuI CTGGAG 2 cut(s) 432, 590
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 518
HhaI GCGC 1 cut(s) 306
Hin1II CATG 6 cut(s) 58, 201, 275, 580, 602, 613
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HinfI GANTC 3 cut(s) 510, 542, 572
HpaII CCGG 1 cut(s) 518
Hpy166II GTNNAC 2 cut(s) 388, 461
Hpy188I TCNGA 2 cut(s) 180, 547
Hpy188III TCNNGA 1 cut(s) 592
Hpy8I GTNNAC 2 cut(s) 388, 461
Hpy99I CGWCG 1 cut(s) 535
HpyAV CCTTC 3 cut(s) 185, 295, 616
HpyCH4III ACNGT 2 cut(s) 218, 293
HpyCH4V TGCA 4 cut(s) 197, 401, 461, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 281, 407, 498
HpyF3I CTNAG 2 cut(s) 29, 187
Hsp92II CATG 6 cut(s) 58, 201, 275, 580, 602, 613
HspAI GCGC 1 cut(s) 304
Kzo9I GATC 4 cut(s) 364, 377, 534, 579
LmnI GCTCC 2 cut(s) 101, 322
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 4 cut(s) 14, 148, 572, 585
MaeIII GTNAC 2 cut(s) 329, 502
MalI GATC 4 cut(s) 366, 379, 536, 581
MboI GATC 4 cut(s) 364, 377, 534, 579
MboII GAAGA 9 cut(s) 105, 108, 111, 114, 117, 120, 123, 242, 387
MflI RGATCY 1 cut(s) 377
MhlI GDGCHC 1 cut(s) 463
MlyI GAGTC 2 cut(s) 536, 581
MnlI CCTC 3 cut(s) 251, 286, 407
Mph1103I ATGCAT 2 cut(s) 199, 600
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 4 cut(s) 44, 321, 519, 569
MvaI CCWGG 3 cut(s) 44, 321, 569
MwoI GCNNNNNNNGC 4 cut(s) 203, 281, 407, 498
NciI CCSGG 1 cut(s) 519
NcoI CCATGG 1 cut(s) 54
NdeII GATC 4 cut(s) 364, 377, 534, 579
NlaIII CATG 6 cut(s) 58, 201, 275, 580, 602, 613
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 329
NsiI ATGCAT 2 cut(s) 199, 600
NspI RCATGY 2 cut(s) 201, 602
PaeI GCATGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 510
PflMI CCANNNNNTGG 1 cut(s) 488
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 2 cut(s) 536, 580
PpsI GAGTC 2 cut(s) 536, 580
Psp6I CCWGG 3 cut(s) 42, 319, 567
PspGI CCWGG 3 cut(s) 42, 319, 567
PspN4I GGNNCC 1 cut(s) 318
PsuI RGATCY 1 cut(s) 377
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 4 cut(s) 364, 377, 534, 579
SchI GAGTC 2 cut(s) 536, 581
ScrFI CCNGG 4 cut(s) 44, 321, 519, 569
SduI GDGCHC 1 cut(s) 463
SetI ASST 5 cut(s) 30, 35, 271, 424, 445
SfaNI GCATC 4 cut(s) 14, 148, 572, 585
SfcI CTRYAG 1 cut(s) 444
SphI GCATGC 1 cut(s) 201
SsiI CCGC 2 cut(s) 201, 492
SspI AATATT 1 cut(s) 85
StyD4I CCNGG 4 cut(s) 42, 319, 517, 567
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 218, 293
TfiI GAWTC 1 cut(s) 510
TscAI CASTG 2 cut(s) 241, 463
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 67, 598, 612
TspRI CASTG 2 cut(s) 241, 463
Van91I CCANNNNNTGG 1 cut(s) 488
VneI GTGCAC 1 cut(s) 459
XceI RCATGY 2 cut(s) 201, 602
Zsp2I ATGCAT 2 cut(s) 199, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.