Rorug04G0132400

Glucan endo-1,3-beta-glucosidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014577
Physical Location & Seq
Reverse (-)
21214899 .. 21217954
3056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0132400.1

Sequence Viewer

Length: 234 bp
ATGGCCGAGGTTGAGCTGAAAACAGCACCTGCTGATTTTCGATTCCCTACGACAAATCAAACCAGGCACTGCTTCACGCGATACATTGAGTTTCATAGGTGCTTAGCAGCAAAGGGTGAAGAGTCTGGTGAATGTGAAAGATTTTCCAAATATTACCGTTCGCTTTGCCCAGGCGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGACTGGGACATTCCCAGGTCCGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

77

Amino Acids

9.07

Weight (kDa)

6.1

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 14 - 74 7.2e-23 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014577)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G13600
fragaria_vesca FvH4_4g16510 FvH4_4g16510
malus_domestica MD04G1009500.v1.1
prunus_persica Prupe.1G008800_v2.0.a1
pyrus_communis pycom04g00730
rosa_chinensis RchiOBHm_Chr4g0415121
rosa_laevigata RLG00000008096
rosa_multiflora Rmu_sc0000635.1_g000003 Rmu_sc0003748.1_g000016
rosa_roxburghii Rroxscaffold_5G00358920
rosa_rugosa Rorug04G0132400
rosa_samantha Rh4AG192200 Rh4BG190300 Rh4CG203000 Rh4DG190100
rosa_wichuraiana Rw4G016350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccII CGCG 1 cut(s) 79
AciI CCGC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 3
AjnI CCWGG 3 cut(s) 62, 169, 220
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 200
AlwNI CAGNNNCTG 2 cut(s) 29, 69
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 128, 140
AvaII GGWCC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 119
BciT130I CCWGG 3 cut(s) 64, 171, 222
BcoDI GTCTC 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 1 cut(s) 108
BlpI GCTNAGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 64, 171, 222
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 3 cut(s) 64, 171, 222
BmrI ACTGGG 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 6, 169, 220
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 3 cut(s) 64, 171, 222
BseDI CCNNGG 3 cut(s) 6, 169, 220
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 5
BslFI GGGAC 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 1 cut(s) 5
Bsp1720I GCTNAGC 1 cut(s) 103
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 3 cut(s) 6, 169, 220
Bst2UI CCWGG 3 cut(s) 64, 171, 222
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 103
BstFNI CGCG 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 200
BstNI CCWGG 3 cut(s) 64, 171, 222
BstSCI CCNGG 3 cut(s) 62, 169, 220
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 37
CaiI CAGNNNCTG 2 cut(s) 29, 69
Cfr13I GGNCC 1 cut(s) 224
CviJI RGCY 2 cut(s) 5, 16
CviKI_1 RGCY 2 cut(s) 5, 16
DdeI CTNAG 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 224
EcoRII CCWGG 3 cut(s) 62, 169, 220
FaiI YATR 1 cut(s) 96
FaqI GGGAC 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 108
Fsp4HI GCNGC 1 cut(s) 108
GluI GCNGC 1 cut(s) 108
HaeIII GGCC 1 cut(s) 5
HinfI GANTC 2 cut(s) 42, 122
HphI GGTGA 2 cut(s) 128, 140
HpyCH4III ACNGT 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 103
LpnPI CCDG 8 cut(s) 42, 49, 76, 111, 156, 183, 195, 207
Lsp1109I GCAGC 1 cut(s) 119
MboII GAAGA 1 cut(s) 131
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 1 cut(s) 195
MspR9I CCNGG 3 cut(s) 64, 171, 222
MvaI CCWGG 3 cut(s) 64, 171, 222
MvnI CGCG 1 cut(s) 79
NmeAIII GCCGAG 1 cut(s) 31
PaqCI CACCTGC 1 cut(s) 37
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp6I CCWGG 3 cut(s) 62, 169, 220
PspGI CCWGG 3 cut(s) 62, 169, 220
PspPI GGNCC 1 cut(s) 224
PstNI CAGNNNCTG 2 cut(s) 29, 69
SatI GCNGC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 3 cut(s) 64, 171, 222
SetI ASST 5 cut(s) 12, 18, 31, 101, 226
SinI GGWCC 1 cut(s) 224
SsiI CCGC 1 cut(s) 227
SspI AATATT 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 62, 169, 220
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 40
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 1 cut(s) 74
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.