AT4G14050

DYW family of nucleic acid deaminases

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
8103521 .. 8105637
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14050.1

Sequence Viewer

Length: 1839 bp
ATGCTTATCCCTCACTATCTTCATCAGCTCCAGCTCTGCGCCAGGAATCGAACCCTAACCACTGCTAAAGCCCTCCATGCCCACATCGTCAAGCTCGGGATCGTTCAATGTTGCCCTTTGGCCAACACACTTGTCAATGTCTATGGGAAATGCGGTGCTGCTTCTCATGCTCTCCAGGTGTTCGACGAAATGCCTCATAGAGATCACATCGCCTGGGCCTCGGTTCTCACAGCTCTTAATCAAGCCAATCTCTCTGGTAAGACACTATCAGTATTTTCTTCAGTGGGTTCGAGCTCTGGGTTGCGTCCTGATGATTTTGTGTTCTCGGCTCTTGTTAAGGCTTGTGCTAACTTAGGATCTATTGATCACGGGAGGCAAGTTCATTGCCATTTTATAGTCTCTGAGTATGCTAATGATGAAGTTGTTAAGTCTTCACTGGTTGATATGTATGCTAAATGTGGATTGCTTAATAGTGCTAAAGCAGTTTTCGATTCTATAAGAGTGAAAAACACCATTTCATGGACTGCAATGGTATCTGGATATGCTAAAAGCGGAAGAAAGGAAGAAGCTTTGGAGCTTTTTAGGATATTACCAGTCAAGAATTTGTATTCTTGGACTGCGTTGATCTCTGGTTTTGTACAGAGTGGGAAAGGGCTTGAAGCTTTTTCTGTTTTCACTGAAATGAGGAGAGAAAGAGTTGACATTTTGGATCCTTTAGTTCTTTCGAGCATCGTTGGCGCTTGTGCTAATTTGGCAGCTTCTATAGCGGGGAGGCAGGTTCATGGGTTGGTTATAGCTCTAGGATTTGATTCTTGTGTGTTTATTAGTAACGCCCTTATCGATATGTACGCTAAATGCAGCGATGTTATAGCTGCAAAGGATATTTTCAGTAGGATGCGTCACAGAGATGTAGTTTCATGGACATCGCTTATAGTTGGAATGGCTCAGCACGGGCAGGCTGAGAAGGCATTAGCGTTGTATGATGACATGGTTTCTCACGGTGTAAAGCCCAATGAGGTCACATTTGTTGGGTTGATATATGCGTGTAGCCATGTCGGTTTTGTTGAGAAAGGCCGTGAGCTTTTCCAATCAATGACTAAGGACTATGGAATTCGCCCATCTTTGCAGCATTATACATGCTTATTGGATCTTCTCGGTCGCTCTGGACTCCTTGATGAGGCTGAGAACTTAATTCATACAATGCCGTTTCCTCCAGATGAACCAACATGGGCTGCTTTACTTAGCGCTTGCAAGCGCCAGGGACGAGGTCAGATGGGTATAAGAATCGCTGATCATCTCGTAAGCAGCTTTAAACTGAAAGATCCATCGACTTATATACTTTTATCAAACATCTATGCAAGTGCTTCTTTGTGGGGAAAAGTATCAGAAGCAAGAAGGAAACTAGGAGAAATGGAAGTTAGAAAGGATCCAGGGCACAGTAGCGTCGAGGTACGGAAAGAAACCGAAGTGTTTTACGCAGGAGAAACATCTCATCCTCTAAAAGAAGACATTTTTCGATTGCTTAAGAAGCTAGAGGAAGAAATGAGGATAAGAAATGGTTATGTTCCTGATACTAGTTGGATCCTACACGACATGGATGAGCAAGAGAAAGAAAAGCTTTTGTTTTGGCATAGCGAACGATCCGCTGTTGCATACGGATTGCTTAAAGCTGTTCCGGGAACTCCTATACGGATTGTGAAAAATCTAAGGGTTTGTGGAGATTGTCATGTTGTTCTGAAACATATAAGTGAGATTACAGAAAGAGAGATTATAGTTAGAGATGCGACTAGATATCATCATTTTAAGGGAGGAAAATGTTCCTGCAATGACTTCTGGTAA

Protein Analysis

612

Amino Acids

68.04

Weight (kDa)

8.34

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 172 - 196 6.8e-06 PPR repeat
PPR PF01535 203 - 232 6e-07 PPR repeat
PPR_2 PF13041 302 - 350 1.3e-13 PPR repeat family
PPR PF01535 305 - 335 9.4e-07 PPR repeat
PPR_long PF17177 318 - 449 4.1e-09 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 439 - 483 6.9e-08 E motif
DYW_deaminase PF14432 520 - 612 2.4e-42 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 519
AciI CCGC 4 cut(s) 153, 552, 767, 1644
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 601, 1110
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 3 cut(s) 639, 848, 1452
AfeI AGCGCT 1 cut(s) 1246
AfiI CCNNNNNNNGG 2 cut(s) 519, 1177
AflII CTTAAG 1 cut(s) 1523
AgsI TTSAA 2 cut(s) 107, 659
AhlI ACTAGT 1 cut(s) 1574
AjnI CCWGG 5 cut(s) 41, 174, 212, 1257, 1429
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 403
Ama87I CYCGRG 1 cut(s) 95
Aor51HI AGCGCT 1 cut(s) 1246
AoxI GGCC 3 cut(s) 120, 216, 1072
ApeKI GCWGC 7 cut(s) 158, 755, 858, 872, 1126, 1232, 1305
ApoI RAATTY 2 cut(s) 601, 1110
Asp700I GAANNNNTTC 1 cut(s) 1816
AspLEI GCGC 4 cut(s) 41, 740, 1247, 1257
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 1677
AvaI CYCGRG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 1437
BalI TGGCCA 1 cut(s) 122
BamHI GGATCC 3 cut(s) 709, 1426, 1581
BanII GRGCYC 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 423, 1512
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 7 cut(s) 145, 767, 859, 870, 1138, 1219, 1317
BccI CCATC 3 cut(s) 1126, 1267, 1333
BceAI ACGGC 2 cut(s) 1059, 1189
BciT130I CCWGG 5 cut(s) 43, 176, 214, 1259, 1431
BclI TGATCA 2 cut(s) 364, 1291
BcnI CCSGG 1 cut(s) 1677
BcoDI GTCTC 1 cut(s) 403
BcuI ACTAGT 1 cut(s) 1574
BfaI CTAG 5 cut(s) 800, 1403, 1532, 1575, 1788
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 3 cut(s) 741, 1248, 1258
BfrI CTTAAG 1 cut(s) 1523
BfuAI ACCTGC 1 cut(s) 766
BisI GCNGC 7 cut(s) 159, 756, 859, 873, 1127, 1233, 1306
BlpI GCTNAGC 1 cut(s) 945
BlsI GCNGC 7 cut(s) 160, 757, 860, 874, 1128, 1234, 1307
Bme1390I CCNGG 6 cut(s) 43, 176, 214, 1259, 1431, 1677
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 3 cut(s) 711, 1428, 1583
BmrFI CCNGG 6 cut(s) 43, 176, 214, 1259, 1431, 1677
BmsI GCATC 3 cut(s) 738, 885, 1771
BpiI GAAGAC 2 cut(s) 423, 1512
BpmI CTGGAG 3 cut(s) 14, 158, 1197
Bpu1102I GCTNAGC 1 cut(s) 945
BpuMI CCSGG 1 cut(s) 1677
Bsa29I ATCGAT 1 cut(s) 840
BsaJI CCNNGG 4 cut(s) 213, 219, 1258, 1430
Bsc4I CCNNNNNNNGG 2 cut(s) 519, 1177
Bse1I ACTGG 2 cut(s) 441, 593
Bse3DI GCAATG 3 cut(s) 382, 534, 1831
BseBI CCWGG 5 cut(s) 43, 176, 214, 1259, 1431
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 4 cut(s) 213, 219, 1258, 1430
BseGI GGATG 3 cut(s) 900, 1492, 1603
BseLI CCNNNNNNNGG 2 cut(s) 519, 1177
BseMI GCAATG 3 cut(s) 382, 534, 1831
BseMII CTCAG 4 cut(s) 393, 951, 959, 1173
BseNI ACTGG 2 cut(s) 441, 593
BseRI GAGGAG 1 cut(s) 700
BseSI GKGCMC 1 cut(s) 1437
BseXI GCAGC 7 cut(s) 145, 767, 859, 870, 1138, 1219, 1317
Bsh1285I CGRYCG 1 cut(s) 1159
BshFI GGCC 3 cut(s) 122, 218, 1074
BshVI ATCGAT 1 cut(s) 840
BsiEI CGRYCG 1 cut(s) 1159
BsiHKAI GWGCWC 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 1676
BslFI GGGAC 1 cut(s) 1275
BslI CCNNNNNNNGG 2 cut(s) 519, 1177
BsmAI GTCTC 1 cut(s) 403
BsmFI GGGAC 1 cut(s) 1275
BsnI GGCC 3 cut(s) 122, 218, 1074
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 296, 1437
Bsp1407I TGTACA 1 cut(s) 637
Bsp1720I GCTNAGC 1 cut(s) 945
BspACI CCGC 4 cut(s) 153, 552, 767, 1644
BspANI GGCC 3 cut(s) 122, 218, 1074
BspCNI CTCAG 4 cut(s) 394, 952, 958, 1174
BspDI ATCGAT 1 cut(s) 840
BspLI GGNNCC 3 cut(s) 711, 1428, 1583
BspMI ACCTGC 1 cut(s) 766
BspTI CTTAAG 1 cut(s) 1523
BsrDI GCAATG 3 cut(s) 382, 534, 1831
BsrGI TGTACA 1 cut(s) 637
BsrI ACTGG 2 cut(s) 441, 593
BssECI CCNNGG 4 cut(s) 213, 219, 1258, 1430
Bst2UI CCWGG 5 cut(s) 43, 176, 214, 1259, 1431
Bst4CI ACNGT 2 cut(s) 1001, 1439
BstAFI CTTAAG 1 cut(s) 1523
BstAUI TGTACA 1 cut(s) 637
BstC8I GCNNGC 3 cut(s) 957, 1249, 1253
BstDEI CTNAG 8 cut(s) 352, 402, 945, 960, 1098, 1182, 1241, 1706
BstENI CCTNNNNNAGG 1 cut(s) 1175
BstF5I GGATG 3 cut(s) 900, 1492, 1603
BstH2I RGCGCY 3 cut(s) 741, 1248, 1258
BstHHI GCGC 4 cut(s) 41, 740, 1247, 1257
BstMAI GTCTC 1 cut(s) 403
BstMCI CGRYCG 1 cut(s) 1159
BstMWI GCNNNNNNNGC 7 cut(s) 77, 167, 735, 752, 764, 965, 1528
BstNI CCWGG 5 cut(s) 43, 176, 214, 1259, 1431
BstNSI RCATGY 1 cut(s) 1140
BstSCI CCNGG 6 cut(s) 41, 174, 212, 1257, 1429, 1675
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 1 cut(s) 1437
BstV1I GCAGC 7 cut(s) 145, 767, 859, 870, 1138, 1219, 1317
BstV2I GAAGAC 2 cut(s) 423, 1512
BstX2I RGATCY 6 cut(s) 356, 709, 1147, 1321, 1426, 1581
BstYI RGATCY 6 cut(s) 356, 709, 1147, 1321, 1426, 1581
Bsu15I ATCGAT 1 cut(s) 840
BsuRI GGCC 3 cut(s) 122, 218, 1074
BsuTUI ATCGAT 1 cut(s) 840
BtgZI GCGATG 3 cut(s) 193, 876, 909
BtsCI GGATG 3 cut(s) 900, 1492, 1603
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 4 cut(s) 60, 288, 434, 675
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 3 cut(s) 957, 1249, 1253
CfoI GCGC 4 cut(s) 41, 740, 1247, 1257
Cfr13I GGNCC 1 cut(s) 216
ClaI ATCGAT 1 cut(s) 840
CseI GACGC 3 cut(s) 293, 887, 1432
Csp6I GTAC 3 cut(s) 638, 847, 1451
CviQI GTAC 3 cut(s) 638, 847, 1451
DdeI CTNAG 8 cut(s) 352, 402, 945, 960, 1098, 1182, 1241, 1706
DraI TTTAAA 1 cut(s) 1312
EaeI YGGCCR 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 296
Eco32I GATATC 1 cut(s) 1793
Eco47III AGCGCT 1 cut(s) 1246
Eco53kI GAGCTC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 1175
EcoRI GAATTC 1 cut(s) 1110
EcoRII CCWGG 5 cut(s) 41, 174, 212, 1257, 1429
EcoRV GATATC 1 cut(s) 1793
EcoT38I GRGCYC 1 cut(s) 296
FalI AAGNNNNNCTT 4 cut(s) 1351, 1383, 1602, 1634
FaqI GGGAC 1 cut(s) 1275
FauI CCCGC 1 cut(s) 760
FbaI TGATCA 2 cut(s) 364, 1291
Fnu4HI GCNGC 7 cut(s) 159, 756, 859, 873, 1127, 1233, 1306
FokI GGATG 3 cut(s) 907, 1479, 1610
FriOI GRGCYC 1 cut(s) 296
Fsp4HI GCNGC 7 cut(s) 159, 756, 859, 873, 1127, 1233, 1306
FspBI CTAG 5 cut(s) 800, 1403, 1532, 1575, 1788
GlaI GCGC 4 cut(s) 40, 739, 1246, 1256
GluI GCNGC 7 cut(s) 159, 756, 859, 873, 1127, 1233, 1306
GsuI CTGGAG 3 cut(s) 14, 158, 1197
HaeII RGCGCY 3 cut(s) 741, 1248, 1258
HaeIII GGCC 3 cut(s) 122, 218, 1074
HapII CCGG 1 cut(s) 1676
HgaI GACGC 3 cut(s) 293, 887, 1432
HhaI GCGC 4 cut(s) 41, 740, 1247, 1257
Hin6I GCGC 4 cut(s) 39, 738, 1245, 1255
HinP1I GCGC 4 cut(s) 39, 738, 1245, 1255
HincII GTYRAC 1 cut(s) 700
HindII GTYRAC 1 cut(s) 700
HindIII AAGCTT 3 cut(s) 567, 660, 1616
HinfI GANTC 5 cut(s) 46, 491, 809, 1167, 1284
HpaII CCGG 1 cut(s) 1676
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 4 cut(s) 403, 1272, 1387, 1737
Hpy188III TCNNGA 7 cut(s) 97, 308, 537, 598, 1164, 1214, 1568
Hpy8I GTNNAC 1 cut(s) 700
Hpy99I CGWCG 2 cut(s) 188, 1448
HpyAV CCTTC 2 cut(s) 958, 1389
HpyCH4III ACNGT 2 cut(s) 1001, 1439
HpyCH4V TGCA 8 cut(s) 527, 858, 875, 1126, 1251, 1358, 1652, 1824
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 167, 735, 752, 764, 965, 1528
HpyF3I CTNAG 8 cut(s) 352, 402, 945, 960, 1098, 1182, 1241, 1706
HspAI GCGC 4 cut(s) 39, 738, 1245, 1255
Ksp22I TGATCA 2 cut(s) 364, 1291
LmnI GCTCC 2 cut(s) 33, 574
Lsp1109I GCAGC 7 cut(s) 145, 767, 859, 870, 1138, 1219, 1317
LweI GCATC 3 cut(s) 738, 885, 1771
MaeI CTAG 5 cut(s) 800, 1403, 1532, 1575, 1788
MaeIII GTNAC 3 cut(s) 827, 899, 1018
MboII GAAGA 8 cut(s) 11, 270, 423, 567, 575, 1142, 1517, 1550
MflI RGATCY 6 cut(s) 356, 709, 1147, 1321, 1426, 1581
MhlI GDGCHC 2 cut(s) 296, 1437
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 4 cut(s) 601, 748, 1110, 1191
MluNI TGGCCA 1 cut(s) 122
MlyI GAGTC 1 cut(s) 1161
MmeI TCCRAC 2 cut(s) 916, 1559
Mox20I TGGCCA 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 1816
MscI TGGCCA 1 cut(s) 122
MseI TTAA 9 cut(s) 237, 336, 426, 468, 1190, 1311, 1524, 1665, 1803
MslI CAYNNNNRTG 3 cut(s) 680, 906, 1746
Msp20I TGGCCA 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 1646
MspCI CTTAAG 1 cut(s) 1523
MspI CCGG 1 cut(s) 1676
MspR9I CCNGG 6 cut(s) 43, 176, 214, 1259, 1431, 1677
MvaI CCWGG 5 cut(s) 43, 176, 214, 1259, 1431
MwoI GCNNNNNNNGC 7 cut(s) 77, 167, 735, 752, 764, 965, 1528
NciI CCSGG 1 cut(s) 1677
NlaIV GGNNCC 3 cut(s) 711, 1428, 1583
NmeAIII GCCGAG 1 cut(s) 305
NmuCI GTSAC 2 cut(s) 899, 1018
NspI RCATGY 1 cut(s) 1140
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PdmI GAANNNNTTC 1 cut(s) 1816
PfeI GAWTC 4 cut(s) 46, 491, 809, 1284
PflFI GACNNNGTC 1 cut(s) 1266
PflMI CCANNNNNTGG 1 cut(s) 519
PfoI TCCNGGA 1 cut(s) 1675
PkrI GCNGC 7 cut(s) 160, 757, 860, 874, 1128, 1234, 1307
PleI GAGTC 1 cut(s) 1161
PpsI GAGTC 1 cut(s) 1161
Psp124BI GAGCTC 1 cut(s) 296
Psp6I CCWGG 5 cut(s) 41, 174, 212, 1257, 1429
PspGI CCWGG 5 cut(s) 41, 174, 212, 1257, 1429
PspN4I GGNNCC 3 cut(s) 711, 1428, 1583
PspPI GGNCC 1 cut(s) 216
PsuI RGATCY 6 cut(s) 356, 709, 1147, 1321, 1426, 1581
PsyI GACNNNGTC 1 cut(s) 1266
RsaI GTAC 3 cut(s) 639, 848, 1452
RsaNI GTAC 3 cut(s) 638, 847, 1451
RseI CAYNNNNRTG 3 cut(s) 680, 906, 1746
SacI GAGCTC 1 cut(s) 296
SaqAI TTAA 9 cut(s) 237, 336, 426, 468, 1190, 1311, 1524, 1665, 1803
SatI GCNGC 7 cut(s) 159, 756, 859, 873, 1127, 1233, 1306
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 1161
ScrFI CCNGG 6 cut(s) 43, 176, 214, 1259, 1431, 1677
SduI GDGCHC 2 cut(s) 296, 1437
SfaNI GCATC 3 cut(s) 738, 885, 1771
SfcI CTRYAG 1 cut(s) 762
SmiMI CAYNNNNRTG 3 cut(s) 680, 906, 1746
SmlI CTYRAG 1 cut(s) 1523
SmoI CTYRAG 1 cut(s) 1523
SpeI ACTAGT 1 cut(s) 1574
Sse9I AATT 4 cut(s) 601, 748, 1110, 1191
SsiI CCGC 4 cut(s) 153, 552, 767, 1644
SspMI CTAG 5 cut(s) 800, 1403, 1532, 1575, 1788
SstI GAGCTC 1 cut(s) 296
StyD4I CCNGG 6 cut(s) 41, 174, 212, 1257, 1429, 1675
TaaI ACNGT 2 cut(s) 1001, 1439
TaqI TCGA 9 cut(s) 49, 183, 290, 489, 725, 840, 1328, 1446, 1516
TaqII GACCGA 1 cut(s) 1145
TasI AATT 4 cut(s) 601, 748, 1110, 1191
TatI WGTACW 1 cut(s) 637
TfiI GAWTC 4 cut(s) 46, 491, 809, 1284
Tru1I TTAA 9 cut(s) 237, 336, 426, 468, 1190, 1311, 1524, 1665, 1803
Tru9I TTAA 9 cut(s) 237, 336, 426, 468, 1190, 1311, 1524, 1665, 1803
TscAI CASTG 4 cut(s) 67, 288, 441, 682
TseFI GTSAC 2 cut(s) 899, 1018
TseI GCWGC 7 cut(s) 158, 755, 858, 872, 1126, 1232, 1305
Tsp45I GTSAC 2 cut(s) 899, 1018
TspDTI ATGAA 8 cut(s) 11, 371, 432, 507, 770, 906, 1184, 1233
TspGWI ACGGA 3 cut(s) 1468, 1671, 1705
TspRI CASTG 4 cut(s) 67, 288, 441, 682
Tth111I GACNNNGTC 1 cut(s) 1266
Van91I CCANNNNNTGG 1 cut(s) 519
Vha464I CTTAAG 1 cut(s) 1523
XagI CCTNNNNNAGG 1 cut(s) 1175
XapI RAATTY 2 cut(s) 601, 1110
XceI RCATGY 1 cut(s) 1140
XmnI GAANNNNTTC 1 cut(s) 1816
XspI CTAG 5 cut(s) 800, 1403, 1532, 1575, 1788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.