Rorug04G0118700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009999
Physical Location & Seq
Forward (+)
18798513 .. 18801028
2516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0118700.1

Sequence Viewer

Length: 915 bp
ATGGCTCTGAACAGGAATCCGGCAATGGCTGCCATGCTGTTAGGGTTGTTGTTATTGATGCATGGCCCCACTTCGGCATTGGCCCTATCGGGCGGGGCAGTCGGCGGAGGCTCCTTCTCATCCGGCGGCTCTTCTTCATCATCATCATCCTCATCTTCTTCTAGGTACTACGATTCTGGCGATGGTTCGTCCTCTTCGTCGTCGTCCTCAATGAACTTCATCATCTGGATAATCATCGGATTCATCGCTGCAGCTATCGCGTTTTTTCCGTTTGTTTTTGTGATAGCCTGCTGCTGCAAAATTAAGGGAGAAAAATGTTCGAGTTTTTCAACTAGTGTTTTGAAGCTCCAGGTTGGTTTATTGGGCTCAGCACCAACCCTCCAAACGGATCTCAATCGGATTGCTGAAACCGCAGATACTTCCACCTCTCAGGGTTGGAGCAATGTTTTGGCAGGGGCAACAATAAGTTTGCTTCAGAATCTTGACTATTGCATCTCAGGTTATTCATCAGTGGCTCTAAAACAAACCATACAGGATGCAGAGAAATACTTCAATCAATTGTCGATCACAGAAAGGGCTATATGTGATAAAGAAACGCTTGTCAATGTGAACAACATAAAAGTTAAAAGTTCAACCAGCAAGGCAGCTACTGGATCCCAGAGTGAATATATAACGGTTACTATACTGGTGGCCACTCGAGGATTGTATAAGCTGCCAACAGTTGATGACAGTAGTACCTTGAAGCAAGCATTGCAAAACCTCAAATCCATTCCCTCGAACAAAATATTGTCAGTCCAAGTCTTGTGGACTCCTCAAGAAGAAGATGACAATCTGTCAGAACAGCAATTACTCAATAAGTACCCTCTTTTGAAGCCTTTTAAAGATTATCCATTAGTTGAAGTTACGTTAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

304

Amino Acids

32.25

Weight (kDa)

6.58

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1517 PF07466 111 - 292 1.9e-59 Protein of unknown function (DUF1517)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 4 cut(s) 93, 105, 126, 411
AclWI GGATC 3 cut(s) 396, 648, 661
AcoI YGGCCR 1 cut(s) 690
AcuI CTGAAG 1 cut(s) 458
AfaI GTAC 3 cut(s) 167, 736, 860
AfiI CCNNNNNNNGG 2 cut(s) 73, 385
AgsI TTSAA 7 cut(s) 330, 343, 553, 633, 742, 871, 899
AhdI GACNNNNNGTC 1 cut(s) 832
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 4 cut(s) 254, 346, 647, 712
AluI AGCT 4 cut(s) 254, 346, 647, 712
AlwI GGATC 3 cut(s) 396, 648, 661
AlwNI CAGNNNCTG 1 cut(s) 650
Ama87I CYCGRG 1 cut(s) 696
AoxI GGCC 3 cut(s) 64, 81, 690
ApeKI GCWGC 7 cut(s) 29, 248, 251, 291, 294, 644, 712
Asp700I GAANNNNTTC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 65, 82
AvaI CYCGRG 1 cut(s) 696
BaeI ACNNNNGTAYC 2 cut(s) 718, 751
BalI TGGCCA 1 cut(s) 692
BamHI GGATCC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 368
BbvI GCAGC 7 cut(s) 16, 235, 263, 278, 281, 656, 699
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 350
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 2 cut(s) 162, 333
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 8 cut(s) 30, 127, 249, 252, 292, 295, 645, 713
BlpI GCTNAGC 1 cut(s) 367
BlsI GCNGC 8 cut(s) 31, 128, 250, 253, 293, 296, 646, 714
Bme1390I CCNGG 1 cut(s) 350
BmeRI GACNNNNNGTC 1 cut(s) 832
BmeT110I CYCGRG 1 cut(s) 696
BmgT120I GGNCC 2 cut(s) 65, 82
BmiI GGNNCC 3 cut(s) 67, 112, 655
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 3 cut(s) 48, 501, 526
BpmI CTGGAG 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 798
BsaBI GATNNNNATC 3 cut(s) 233, 393, 828
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 385
Bse1I ACTGG 2 cut(s) 655, 690
Bse3DI GCAATG 3 cut(s) 30, 448, 749
Bse8I GATNNNNATC 3 cut(s) 233, 393, 828
BseBI CCWGG 1 cut(s) 350
BseGI GGATG 3 cut(s) 119, 146, 541
BseJI GATNNNNATC 3 cut(s) 233, 393, 828
BseLI CCNNNNNNNGG 2 cut(s) 73, 385
BseMI GCAATG 3 cut(s) 30, 448, 749
BseMII CTCAG 3 cut(s) 381, 443, 510
BseNI ACTGG 2 cut(s) 655, 690
BseRI GAGGAG 1 cut(s) 801
BseXI GCAGC 7 cut(s) 16, 235, 263, 278, 281, 656, 699
Bsh1236I CGCG 1 cut(s) 260
BshFI GGCC 3 cut(s) 66, 83, 692
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 2 cut(s) 20, 123
BslI CCNNNNNNNGG 2 cut(s) 73, 385
BsnI GGCC 3 cut(s) 66, 83, 692
BsoBI CYCGRG 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 368
Bsp143I GATC 3 cut(s) 388, 564, 653
Bsp1720I GCTNAGC 1 cut(s) 367
BspACI CCGC 4 cut(s) 93, 105, 126, 411
BspANI GGCC 3 cut(s) 66, 83, 692
BspCNI CTCAG 3 cut(s) 380, 442, 509
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 3 cut(s) 67, 112, 655
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 3 cut(s) 396, 648, 661
BspQI GCTCTTC 1 cut(s) 136
BsrDI GCAATG 3 cut(s) 30, 448, 749
BsrI ACTGG 2 cut(s) 655, 690
BssMI GATC 3 cut(s) 388, 564, 653
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 3 cut(s) 676, 721, 731
Bst6I CTCTTC 2 cut(s) 136, 199
BstAPI GCANNNNNTGC 2 cut(s) 29, 751
BstC8I GCNNGC 2 cut(s) 289, 747
BstDEI CTNAG 3 cut(s) 367, 429, 496
BstF5I GGATG 3 cut(s) 119, 146, 541
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 3 cut(s) 391, 567, 656
BstMBI GATC 3 cut(s) 388, 564, 653
BstMWI GCNNNNNNNGC 4 cut(s) 29, 257, 410, 751
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 7 cut(s) 16, 235, 263, 278, 281, 656, 699
BstX2I RGATCY 2 cut(s) 388, 653
BstYI RGATCY 2 cut(s) 388, 653
BsuRI GGCC 3 cut(s) 66, 83, 692
BtgZI GCGATG 2 cut(s) 195, 229
BtsCI GGATG 3 cut(s) 119, 146, 541
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 2 cut(s) 289, 747
CaiI CAGNNNCTG 1 cut(s) 650
Cfr13I GGNCC 2 cut(s) 65, 82
Csp6I GTAC 3 cut(s) 166, 735, 859
CspCI CAANNNNNGTGG 2 cut(s) 785, 820
CviAII CATG 2 cut(s) 34, 62
CviQI GTAC 3 cut(s) 166, 735, 859
DdeI CTNAG 3 cut(s) 367, 429, 496
DpnI GATC 3 cut(s) 390, 566, 655
DpnII GATC 3 cut(s) 388, 564, 653
DraI TTTAAA 1 cut(s) 880
DriI GACNNNNNGTC 1 cut(s) 832
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 2 cut(s) 136, 199
Eam1105I GACNNNNNGTC 1 cut(s) 832
EarI CTCTTC 2 cut(s) 136, 199
EciI GGCGGA 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 696
EcoRII CCWGG 1 cut(s) 348
EcoT22I ATGCAT 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 368
FaeI CATG 2 cut(s) 37, 65
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FatI CATG 2 cut(s) 33, 61
FauI CCCGC 1 cut(s) 86
Fnu4HI GCNGC 8 cut(s) 30, 127, 249, 252, 292, 295, 645, 713
FokI GGATG 3 cut(s) 106, 133, 548
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 8 cut(s) 30, 127, 249, 252, 292, 295, 645, 713
FspBI CTAG 2 cut(s) 162, 333
GluI GCNGC 8 cut(s) 30, 127, 249, 252, 292, 295, 645, 713
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 3 cut(s) 66, 83, 692
HapII CCGG 2 cut(s) 20, 123
Hin1II CATG 2 cut(s) 37, 65
HinfI GANTC 5 cut(s) 16, 173, 240, 478, 808
HpaII CCGG 2 cut(s) 20, 123
Hpy166II GTNNAC 2 cut(s) 610, 807
Hpy188I TCNGA 5 cut(s) 9, 239, 399, 477, 838
Hpy188III TCNNGA 3 cut(s) 226, 482, 815
Hpy8I GTNNAC 2 cut(s) 610, 807
Hpy99I CGWCG 2 cut(s) 202, 205
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 3 cut(s) 676, 721, 731
HpyCH4IV ACGT 1 cut(s) 905
HpyCH4V TGCA 6 cut(s) 61, 251, 297, 492, 539, 754
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 257, 410, 751
HpyF3I CTNAG 3 cut(s) 367, 429, 496
HpySE526I ACGT 1 cut(s) 905
Hsp92II CATG 2 cut(s) 37, 65
Kzo9I GATC 3 cut(s) 388, 564, 653
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 3 cut(s) 116, 351, 438
Lsp1109I GCAGC 7 cut(s) 16, 235, 263, 278, 281, 656, 699
LweI GCATC 3 cut(s) 48, 501, 526
MaeI CTAG 2 cut(s) 162, 333
MaeII ACGT 1 cut(s) 905
MaeIII GTNAC 2 cut(s) 676, 901
MalI GATC 3 cut(s) 390, 566, 655
MboI GATC 3 cut(s) 388, 564, 653
MboII GAAGA 7 cut(s) 123, 126, 147, 150, 186, 830, 833
MfeI CAATTG 1 cut(s) 557
MflI RGATCY 2 cut(s) 388, 653
MhlI GDGCHC 1 cut(s) 368
MlsI TGGCCA 1 cut(s) 692
MluCI AATT 3 cut(s) 300, 557, 845
MluNI TGGCCA 1 cut(s) 692
MlyI GAGTC 1 cut(s) 802
MmeI TCCRAC 1 cut(s) 416
Mox20I TGGCCA 1 cut(s) 692
Mph1103I ATGCAT 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 548
MscI TGGCCA 1 cut(s) 692
MseI TTAA 3 cut(s) 303, 624, 879
Msp20I TGGCCA 1 cut(s) 692
MspI CCGG 2 cut(s) 20, 123
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 557
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 4 cut(s) 29, 257, 410, 751
NdeII GATC 3 cut(s) 388, 564, 653
NlaIII CATG 2 cut(s) 37, 65
NlaIV GGNNCC 3 cut(s) 67, 112, 655
NsiI ATGCAT 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 194
PdmI GAANNNNTTC 1 cut(s) 548
PfeI GAWTC 4 cut(s) 16, 173, 240, 478
PkrI GCNGC 8 cut(s) 31, 128, 250, 253, 293, 296, 646, 714
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 67, 112, 655
PspPI GGNCC 2 cut(s) 65, 82
PspXI VCTCGAGB 1 cut(s) 696
PsrI GAACNNNNNNTAC 2 cut(s) 831, 863
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 2 cut(s) 388, 653
RsaI GTAC 3 cut(s) 167, 736, 860
RsaNI GTAC 3 cut(s) 166, 735, 859
SapI GCTCTTC 1 cut(s) 136
SaqAI TTAA 3 cut(s) 303, 624, 879
SatI GCNGC 8 cut(s) 30, 127, 249, 252, 292, 295, 645, 713
Sau3AI GATC 3 cut(s) 388, 564, 653
Sau96I GGNCC 2 cut(s) 65, 82
SchI GAGTC 1 cut(s) 802
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 368
SfaNI GCATC 3 cut(s) 48, 501, 526
SfcI CTRYAG 1 cut(s) 249
Sfr274I CTCGAG 1 cut(s) 696
SlaI CTCGAG 1 cut(s) 696
SmlI CTYRAG 2 cut(s) 696, 813
SmoI CTYRAG 2 cut(s) 696, 813
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 3 cut(s) 300, 557, 845
SsiI CCGC 4 cut(s) 93, 105, 126, 411
SspI AATATT 1 cut(s) 786
SspMI CTAG 2 cut(s) 162, 333
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 676, 721, 731
TaiI ACGT 1 cut(s) 908
TaqI TCGA 4 cut(s) 320, 563, 697, 776
TasI AATT 3 cut(s) 300, 557, 845
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 4 cut(s) 16, 173, 240, 478
Tru1I TTAA 3 cut(s) 303, 624, 879
Tru9I TTAA 3 cut(s) 303, 624, 879
TscAI CASTG 1 cut(s) 516
TseI GCWGC 7 cut(s) 29, 248, 251, 291, 294, 644, 712
TspDTI ATGAA 5 cut(s) 126, 208, 227, 232, 495
TspGWI ACGGA 2 cut(s) 258, 401
TspRI CASTG 1 cut(s) 516
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 2 cut(s) 162, 333
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.