Rorug04G0118900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009999
Physical Location & Seq
Reverse (-)
18820326 .. 18823757
3432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0118900.1

Sequence Viewer

Length: 696 bp
ATGATGATGATGCTCCAGTACTCGGCAGCACTACGATGCTCTCTTCCTCCCGACCATTCAACAGTGCGTTCAGTTCTTCCCAACATCACCTCTGCAACTTCATCGTCATCCAATCTAACAAGAAGGGAAGTTTTATCGACTGCTTTAATCTCCACCACATTGGGCTTTACCGTGGCTACTCCTTCAAAGTCCGCCGCAGCTGAGTTCTTGGAACTACCCAACTCCGGTGGCGTCAAGGCTTTGGACCTTCGTGTTGGTACTGGTGAAGTACCCTCCGATGGCGACCAGGTCTCTGTTCATTACTATGGAAGGTTGGCAGCAAAACAAGGATGGCGCTTTGACTCAACATATGATCACAAAGATGAAAATGGTGAACCAACTCCTTTTATATTCGTAGTTGGGACTGGGAAAGTCATTTCAGGGATTGAAACAGCTGTAAAATCTATGAGAGTGGGTGGTCTTCGTAGGATCGTTATACCACCATCGCAAGGATATCAGAGCACGTCACAAGAACCCATACCACCTAATGTACTTACTCTGATTCTTCCAGATTCTTTAAGTCTGCTATCTGTTTTTTTTGACAGGCAGAGACTGTTTACAACCATTTTCAATCCAACTCGTCTTGCTAATGGAGAAGGATCAACTTTGGGGACGCTTGTATTCGATATCGAGCTGGTCAGCCTGAGGCATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

231

Amino Acids

24.97

Weight (kDa)

7.89

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 91 - 226 6.3e-20 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 195
AclWI GGATC 2 cut(s) 476, 646
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 4 cut(s) 20, 259, 270, 531
AfiI CCNNNNNNNGG 4 cut(s) 22, 224, 278, 488
AgsI TTSAA 4 cut(s) 60, 186, 428, 610
AjiI CACGTC 1 cut(s) 504
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 3 cut(s) 200, 434, 673
AluI AGCT 3 cut(s) 200, 434, 673
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 2 cut(s) 295, 583
AlwI GGATC 2 cut(s) 476, 646
AlwNI CAGNNNCTG 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 26, 197, 317
AspLEI GCGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 3 cut(s) 79, 275, 383
AvaII GGWCC 1 cut(s) 244
AxyI CCTNAGG 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 503
BbvI GCAGC 3 cut(s) 38, 209, 329
BccI CCATC 3 cut(s) 272, 324, 490
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 295, 583
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 4 cut(s) 27, 195, 198, 318
BlsI GCNGC 4 cut(s) 28, 196, 199, 319
BmcAI AGTACT 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 504
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 414
BpiI GAAGAC 1 cut(s) 452
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 224
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 224, 278, 488
Bse1I ACTGG 3 cut(s) 16, 265, 409
Bse21I CCTNAGG 1 cut(s) 683
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 107, 335
BseLI CCNNNNNNNGG 4 cut(s) 22, 224, 278, 488
BseMII CTCAG 2 cut(s) 192, 674
BseNI ACTGG 3 cut(s) 16, 265, 409
BseXI GCAGC 3 cut(s) 38, 209, 329
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 2 cut(s) 415, 664
BslI CCNNNNNNNGG 4 cut(s) 22, 224, 278, 488
BsmAI GTCTC 2 cut(s) 295, 583
BsmFI GGGAC 2 cut(s) 415, 664
Bso31I GGTCTC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 503
Bsp143I GATC 3 cut(s) 352, 468, 638
BspACI CCGC 2 cut(s) 192, 195
BspCNI CTCAG 2 cut(s) 193, 675
BspPI GGATC 2 cut(s) 476, 646
BspTNI GGTCTC 1 cut(s) 295
BsrI ACTGG 3 cut(s) 16, 265, 409
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 3 cut(s) 352, 468, 638
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 3 cut(s) 64, 172, 594
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 201, 683
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 107, 335
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 3 cut(s) 355, 471, 641
BstMAI GTCTC 2 cut(s) 295, 583
BstMBI GATC 3 cut(s) 352, 468, 638
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 38, 209, 329
BstV2I GAAGAC 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 160
Bsu36I CCTNAGG 1 cut(s) 683
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 468
BtrI CACGTC 1 cut(s) 504
BtsCI GGATG 2 cut(s) 107, 335
BtsIMutI CAGTG 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 592
CfoI GCGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 2 cut(s) 220, 661
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 4 cut(s) 19, 258, 269, 530
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviJI RGCY 7 cut(s) 165, 176, 200, 239, 434, 673, 681
CviKI_1 RGCY 7 cut(s) 165, 176, 200, 239, 434, 673, 681
CviQI GTAC 4 cut(s) 19, 258, 269, 530
DdeI CTNAG 2 cut(s) 201, 683
DpnI GATC 3 cut(s) 354, 470, 640
DpnII GATC 3 cut(s) 352, 468, 638
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 181
Eco31I GGTCTC 1 cut(s) 295
Eco32I GATATC 2 cut(s) 494, 667
Eco47I GGWCC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 2 cut(s) 494, 667
FaiI YATR 8 cut(s) 306, 349, 351, 389, 446, 476, 518, 690
FaqI GGGAC 2 cut(s) 415, 664
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 27, 195, 198, 318
FokI GGATG 2 cut(s) 94, 342
Fsp4HI GCNGC 4 cut(s) 27, 195, 198, 318
GlaI GCGC 1 cut(s) 335
GluI GCNGC 4 cut(s) 27, 195, 198, 318
HaeII RGCGCY 1 cut(s) 337
HapII CCGG 1 cut(s) 225
HgaI GACGC 2 cut(s) 220, 661
HhaI GCGC 1 cut(s) 336
Hin1I GRCGYC 1 cut(s) 231
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 3 cut(s) 341, 541, 551
HpaII CCGG 1 cut(s) 225
HphI GGTGA 3 cut(s) 79, 275, 383
Hpy166II GTNNAC 2 cut(s) 374, 597
Hpy188I TCNGA 3 cut(s) 277, 498, 540
Hpy188III TCNNGA 2 cut(s) 50, 548
Hpy8I GTNNAC 2 cut(s) 374, 597
HpyAV CCTTC 5 cut(s) 117, 192, 257, 303, 629
HpyCH4III ACNGT 3 cut(s) 64, 172, 594
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 201, 683
HpySE526I ACGT 1 cut(s) 503
Hsp92I GRCGYC 1 cut(s) 231
HspAI GCGC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 352, 468, 638
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 3 cut(s) 38, 209, 329
LweI GCATC 1 cut(s) 26
MabI ACCWGGT 1 cut(s) 285
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 504
MalI GATC 3 cut(s) 354, 470, 640
MboI GATC 3 cut(s) 352, 468, 638
MboII GAAGA 4 cut(s) 35, 68, 452, 536
MhlI GDGCHC 1 cut(s) 503
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 638
MnlI CCTC 4 cut(s) 57, 100, 283, 678
MseI TTAA 2 cut(s) 146, 557
MslI CAYNNNNRTG 3 cut(s) 34, 303, 360
MspA1I CMGCKG 2 cut(s) 200, 434
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
NdeI CATATG 1 cut(s) 349
NdeII GATC 3 cut(s) 352, 468, 638
NmuCI GTSAC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 541, 551
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 4 cut(s) 28, 196, 199, 319
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspPI GGNCC 1 cut(s) 244
PstNI CAGNNNCTG 1 cut(s) 592
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 2 cut(s) 200, 434
RsaI GTAC 4 cut(s) 20, 259, 270, 531
RsaNI GTAC 4 cut(s) 19, 258, 269, 530
RseI CAYNNNNRTG 3 cut(s) 34, 303, 360
SaqAI TTAA 2 cut(s) 146, 557
SatI GCNGC 4 cut(s) 27, 195, 198, 318
Sau3AI GATC 3 cut(s) 352, 468, 638
Sau96I GGNCC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 20
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 503
SetI ASST 9 cut(s) 92, 202, 249, 291, 314, 436, 506, 526, 675
SexAI ACCWGGT 1 cut(s) 285
SfaNI GCATC 1 cut(s) 26
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 3 cut(s) 34, 303, 360
SsiI CCGC 2 cut(s) 192, 195
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 3 cut(s) 64, 172, 594
TaiI ACGT 1 cut(s) 506
TaqI TCGA 3 cut(s) 137, 663, 669
TatI WGTACW 2 cut(s) 18, 529
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 541, 551
Tru1I TTAA 2 cut(s) 146, 557
Tru9I TTAA 2 cut(s) 146, 557
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 504
TseI GCWGC 3 cut(s) 26, 197, 317
Tsp45I GTSAC 1 cut(s) 504
TspDTI ATGAA 3 cut(s) 90, 287, 378
TspRI CASTG 1 cut(s) 69
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 244
ZrmI AGTACT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.