Rorug04G0118800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009999
Physical Location & Seq
Reverse (-)
18818303 .. 18819510
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0118800.1

Sequence Viewer

Length: 966 bp
ATGAAGACTTCCAGGCCAGACAGACAACGGTTCATCATTTCTTCTTTCTTATTCATTTGCTTCCTCTGTGCCTTGGCTTCTATAAACGAAGTACGGTTCGACAGTCTTCTCAAGTTTGGTCGTTGCGCTCTTACAAAAATCAACTCTCCTTCTCAGATATATAATTCCTCATCGAGCACCTTGATCGAAACCCAGAAGAATTCCTCTGAAGATGAAATTCGTGTACTTTTTGGCATTCTAACCCTTCCAGACCAATACCAACGCCGACACTTCCTGCGTTTAATCTATGGCACTCAGAATCCGGTGGGGGCAAAAGTGGACGTGAAGTTTGTATTCTGCAACCTCACAAAGGAAGACCAAAAGGTACTCGTTGCATTAGAAATAATGCGCTATGATGACATTATCATTCTCGATTGCAAGGAGAATATGAACAAGGGTAAGACTTACACCTACTTTTCAAGCTTGCCGGAGATTTTCAACGATACAGATGGGGTGTATCCACCTTACCATTATGTCATGAAAGCCGATGATGATGCCTACTTTCGGCTTCAAAGCTTGGTCGACTCTTTGAAGCCTTTGCCTAGAGAAGACTTGTACTATGGTTATGTAATTCCATGCCCAAGCATGGACCCTTTTGTGCATTACATGTCTGGAATGGGGTATTTGATTTCTTGGGATATAGTTGAGTGGATCAGAGACTCAGATATCCCTAAGAACCAATTAGAAGGCCCCGAGGACAAAATTTTTGGTGAGTGGATTAGAAATGGGCATCGAGCTAAGAATAGGTTCAACGCTAAGTGGAGTATGTACAATTTTCCGGAGCCACCTACAAGATGTACTCACGAGCTTTGGCCAGATACGATTGCAGTTCATTTGTTGAAGACTCAGGAAAAGTGGATTCGGACATTGAAATACTTCAATGTCACTGATAATCTCAGGCCATCAAAATTGTATCATATACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR

Protein Analysis

321

Amino Acids

37.7

Weight (kDa)

7.58

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Galactosyl_T PF01762 88 - 204 8.1e-08 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 561
AccIII TCCGGA 1 cut(s) 817
AclWI GGATC 1 cut(s) 698
AcoI YGGCCR 1 cut(s) 851
AcsI RAATTY 3 cut(s) 199, 216, 741
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 6 cut(s) 93, 225, 366, 596, 809, 838
AfiI CCNNNNNNNGG 3 cut(s) 349, 543, 625
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 8 cut(s) 459, 478, 551, 571, 790, 880, 910, 919
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 4 cut(s) 462, 555, 776, 847
AluI AGCT 4 cut(s) 462, 555, 776, 847
Alw21I GWGCWC 1 cut(s) 179
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 1 cut(s) 698
Ama87I CYCGRG 1 cut(s) 731
Aor13HI TCCGGA 1 cut(s) 817
AoxI GGCC 4 cut(s) 14, 727, 851, 938
ApoI RAATTY 3 cut(s) 199, 216, 741
ArsI GACNNNNNNTTYG 4 cut(s) 311, 343, 728, 760
Asp700I GAANNNNTTC 2 cut(s) 785, 914
AspLEI GCGC 2 cut(s) 128, 390
AspS9I GGNCC 2 cut(s) 628, 728
AsuHPI GGTGA 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 1 cut(s) 628
BalI TGGCCA 1 cut(s) 853
BauI CACGAG 1 cut(s) 842
BbsI GAAGAC 5 cut(s) 11, 98, 360, 594, 887
Bbv12I GWGCWC 1 cut(s) 179
BccI CCATC 2 cut(s) 482, 949
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 515, 549
BciT130I CCWGG 1 cut(s) 13
BciVI GTATCC 1 cut(s) 507
BcoDI GTCTC 1 cut(s) 690
BfaI CTAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 507
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 628
BmeT110I CYCGRG 1 cut(s) 731
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 628, 728
BmiI GGNNCC 3 cut(s) 630, 730, 822
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 2 cut(s) 523, 778
BpiI GAAGAC 5 cut(s) 11, 98, 360, 594, 887
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 72, 732
BsaWI WCCGGW 2 cut(s) 301, 817
Bsc4I CCNNNNNNNGG 3 cut(s) 349, 543, 625
BseAI TCCGGA 1 cut(s) 817
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 72, 732
BseLI CCNNNNNNNGG 3 cut(s) 349, 543, 625
BseMII CTCAG 5 cut(s) 167, 308, 714, 899, 949
BshFI GGCC 4 cut(s) 16, 729, 853, 940
BsiHKAI GWGCWC 1 cut(s) 179
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 3 cut(s) 302, 467, 818
BslI CCNNNNNNNGG 3 cut(s) 349, 543, 625
BsmAI GTCTC 1 cut(s) 690
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 4 cut(s) 16, 729, 853, 940
BsoBI CYCGRG 1 cut(s) 731
Bsp1286I GDGCHC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 817
Bsp1407I TGTACA 1 cut(s) 807
Bsp143I GATC 2 cut(s) 183, 690
BspANI GGCC 4 cut(s) 16, 729, 853, 940
BspCNI CTCAG 5 cut(s) 166, 307, 713, 898, 948
BspEI TCCGGA 1 cut(s) 817
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 3 cut(s) 630, 730, 822
BspPI GGATC 1 cut(s) 698
BsrGI TGTACA 1 cut(s) 807
BssECI CCNNGG 2 cut(s) 72, 732
BssMI GATC 2 cut(s) 183, 690
BssSI CACGAG 1 cut(s) 842
BssT1I CCWWGG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 842
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 3 cut(s) 30, 96, 104
BstAUI TGTACA 1 cut(s) 807
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 9 cut(s) 153, 294, 700, 711, 777, 795, 885, 935, 963
BstENI CCTNNNNNAGG 1 cut(s) 347
BstHHI GCGC 2 cut(s) 128, 390
BstKTI GATC 2 cut(s) 186, 693
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 2 cut(s) 183, 690
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 1 cut(s) 11
BstV2I GAAGAC 5 cut(s) 11, 98, 360, 594, 887
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 4 cut(s) 16, 729, 853, 940
BtrI CACGTC 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 924
Cac8I GCNNGC 1 cut(s) 464
CciI TCATGA 1 cut(s) 516
CfoI GCGC 2 cut(s) 128, 390
Cfr13I GGNCC 2 cut(s) 628, 728
Csp6I GTAC 6 cut(s) 92, 224, 365, 595, 808, 837
CviAII CATG 4 cut(s) 517, 615, 625, 646
CviQI GTAC 6 cut(s) 92, 224, 365, 595, 808, 837
DdeI CTNAG 9 cut(s) 153, 294, 700, 711, 777, 795, 885, 935, 963
DpnI GATC 2 cut(s) 185, 692
DpnII GATC 2 cut(s) 183, 690
EaeI YGGCCR 1 cut(s) 851
Eco130I CCWWGG 1 cut(s) 72
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 628
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 728
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 11
EcoRV GATATC 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 4 cut(s) 520, 618, 628, 649
FatI CATG 4 cut(s) 516, 614, 624, 645
FblI GTMKAC 1 cut(s) 561
FspBI CTAG 1 cut(s) 582
GlaI GCGC 2 cut(s) 127, 389
HaeIII GGCC 4 cut(s) 16, 729, 853, 940
HapII CCGG 3 cut(s) 302, 467, 818
HhaI GCGC 2 cut(s) 128, 390
Hin1II CATG 4 cut(s) 520, 618, 628, 649
Hin6I GCGC 2 cut(s) 126, 388
HinP1I GCGC 2 cut(s) 126, 388
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 2 cut(s) 460, 553
HinfI GANTC 5 cut(s) 298, 563, 698, 883, 898
HpaII CCGG 3 cut(s) 302, 467, 818
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 3 cut(s) 224, 319, 562
Hpy188I TCNGA 6 cut(s) 156, 208, 297, 695, 703, 903
Hpy188III TCNNGA 7 cut(s) 248, 410, 517, 651, 818, 842, 887
Hpy8I GTNNAC 3 cut(s) 224, 319, 562
HpyAV CCTTC 3 cut(s) 159, 254, 719
HpyCH4III ACNGT 3 cut(s) 30, 96, 104
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 5 cut(s) 339, 374, 417, 640, 866
HpyF3I CTNAG 9 cut(s) 153, 294, 700, 711, 777, 795, 885, 935, 963
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 4 cut(s) 520, 618, 628, 649
HspAI GCGC 2 cut(s) 126, 388
Kpn2I TCCGGA 1 cut(s) 817
Kzo9I GATC 2 cut(s) 183, 690
LmnI GCTCC 1 cut(s) 820
LweI GCATC 2 cut(s) 523, 778
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 922
MalI GATC 2 cut(s) 185, 692
MboI GATC 2 cut(s) 183, 690
MboII GAAGA 8 cut(s) 16, 33, 98, 208, 221, 365, 599, 892
MhlI GDGCHC 1 cut(s) 179
MlsI TGGCCA 1 cut(s) 853
MluCI AATT 8 cut(s) 163, 199, 216, 609, 719, 741, 811, 947
MluNI TGGCCA 1 cut(s) 853
MlyI GAGTC 3 cut(s) 557, 692, 877
MnlI CCTC 5 cut(s) 74, 178, 214, 353, 727
Mox20I TGGCCA 1 cut(s) 853
MroI TCCGGA 1 cut(s) 817
MroXI GAANNNNTTC 2 cut(s) 785, 914
MscI TGGCCA 1 cut(s) 853
MseI TTAA 1 cut(s) 281
Msp20I TGGCCA 1 cut(s) 853
MspI CCGG 3 cut(s) 302, 467, 818
MspR9I CCNGG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 13
NdeII GATC 2 cut(s) 183, 690
NlaIII CATG 4 cut(s) 520, 618, 628, 649
NlaIV GGNNCC 3 cut(s) 630, 730, 822
NmuCI GTSAC 1 cut(s) 922
NspI RCATGY 1 cut(s) 649
PagI TCATGA 1 cut(s) 516
PciI ACATGT 1 cut(s) 645
PctI GAATGC 1 cut(s) 234
PdmI GAANNNNTTC 2 cut(s) 785, 914
PfeI GAWTC 2 cut(s) 298, 898
PleI GAGTC 3 cut(s) 557, 692, 877
PpsI GAGTC 3 cut(s) 557, 692, 877
PscI ACATGT 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 3 cut(s) 630, 730, 822
PspPI GGNCC 2 cut(s) 628, 728
RsaI GTAC 6 cut(s) 93, 225, 366, 596, 809, 838
RsaNI GTAC 6 cut(s) 92, 224, 365, 595, 808, 837
SalI GTCGAC 1 cut(s) 560
SaqAI TTAA 1 cut(s) 281
Sau3AI GATC 2 cut(s) 183, 690
Sau96I GGNCC 2 cut(s) 628, 728
SchI GAGTC 3 cut(s) 557, 692, 877
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 179
SfaNI GCATC 2 cut(s) 523, 778
SinI GGWCC 1 cut(s) 628
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 8 cut(s) 163, 199, 216, 609, 719, 741, 811, 947
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 3 cut(s) 30, 96, 104
TaiI ACGT 1 cut(s) 324
TaqI TCGA 6 cut(s) 99, 173, 186, 411, 561, 772
TasI AATT 8 cut(s) 163, 199, 216, 609, 719, 741, 811, 947
TatI WGTACW 4 cut(s) 223, 594, 807, 836
TfiI GAWTC 2 cut(s) 298, 898
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 1 cut(s) 931
TseFI GTSAC 1 cut(s) 922
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 7 cut(s) 17, 22, 43, 228, 443, 533, 860
TspRI CASTG 1 cut(s) 931
VpaK11BI GGWCC 1 cut(s) 628
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 3 cut(s) 199, 216, 741
XceI RCATGY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 561
XmnI GAANNNNTTC 2 cut(s) 785, 914
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.