Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006272

Physical Location & Seq

Genomic Coordinates Reverse (-)

8153807 .. 8156975

Gene Structure 3169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14147.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCAAACTCATTACGGCTGTATCTAGCATGCATAAAAAATACACTCGAGGCTGCCATGTGCTTACAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAATAAACCAGAGGTTGAATTAAAGACGAGCCCAGAACTTTTGCTAAATCCTGTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAGGTCAAGCAAGCGGATGAACTTGAAAACATACTAACCAAAAAATTTCTCAGATTCTTGTCCATGAGGGCAGAAGCTTTTCAAGTACTGAGGAGGAAGCCAGTGCAGGGCTATGACATAAGCTTTCTTATAACAAACTACCACTGCGAAGAGATGCAGAAACAGAAGCTAATTGATTTCATTATTCAGTTTATGGAGGATATAGAGAAAGAAATAAGGGACTTGAAGGAGTCAGTGAATACAAGAGGAAGACTCGTTGCTACGGAGTTCTTGAAACAGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

169

Amino Acids

19.86

Weight (kDa)

7.57

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARPC4	PF05856	1 - 167	5.1e-79	ARP2/3 complex 20 kDa subunit (ARPC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14147 AT4G14147 AT4G14147
fragaria_vesca	FvH4_4g13710 FvH4_4g13710
malus_domestica	MD04G1012700.v1.1
prunus_persica	Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1
pyrus_communis	pycom04g01010
rosa_chinensis	RchiOBHm_Chr4g0414361 RchiOBHm_Chr7g0213901
rosa_laevigata	RLG00000008152
rosa_multiflora	Rmu_sc0007689.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245660 Rroxscaffold_5G00358230
rosa_rugosa	Rorug04G0127500
rosa_samantha	Rh4AG185400 Rh4BG184900 Rh4CG198200 Rh4DG182700 Rh7AG277500 Rh7CG296600
rosa_wichuraiana	Rw4G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AccIII	TCCGGA	1 cut(s)	210
AciI	CCGC	1 cut(s)	236
AcsI	RAATTY	3 cut(s)	70, 202, 266
AfaI	GTAC	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	169, 329
AgsI	TTSAA	6 cut(s)	92, 116, 248, 305, 448, 496
AluBI	AGCT	3 cut(s)	299, 345, 391
AluI	AGCT	3 cut(s)	299, 345, 391
Ama87I	CYCGRG	1 cut(s)	47
Aor13HI	TCCGGA	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	3 cut(s)	70, 202, 266
Asp700I	GAANNNNTTC	2 cut(s)	300, 500
AvaI	CYCGRG	1 cut(s)	47
BaeI	ACNNNNGTAYC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmcAI	AGTACT	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	366
BpiI	GAAGAC	1 cut(s)	478
BplI	GAGNNNNNCTC	2 cut(s)	459, 491
BpuEI	CTTGAG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 329
Bse1I	ACTGG	1 cut(s)	323
BseAI	TCCGGA	1 cut(s)	210
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	169, 329
BseMII	CTCAG	2 cut(s)	286, 302
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	169, 329
BsmFI	GGGAC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp13I	TCCGGA	1 cut(s)	210
BspACI	CCGC	1 cut(s)	236
BspCNI	CTCAG	2 cut(s)	285, 303
BspEI	TCCGGA	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	501
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	31, 234
BstDEI	CTNAG	2 cut(s)	272, 311
BstF5I	GGATG	1 cut(s)	244
BstNSI	RCATGY	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	3 cut(s)	330, 364, 462
Cac8I	GCNNGC	2 cut(s)	31, 234
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	4 cut(s)	30, 58, 286, 505
CviQI	GTAC	1 cut(s)	308
DdeI	CTNAG	2 cut(s)	272, 311
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	35
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	4 cut(s)	33, 61, 289, 508
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	4 cut(s)	29, 57, 285, 504
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	26
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	4 cut(s)	33, 61, 289, 508
HindIII	AAGCTT	2 cut(s)	297, 343
HinfI	GANTC	3 cut(s)	276, 452, 474
HpaII	CCGG	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	275
Hpy188III	TCNNGA	3 cut(s)	83, 211, 493
HpyAV	CCTTC	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	501
HpyCH4V	TGCA	3 cut(s)	33, 328, 379
HpyF3I	CTNAG	2 cut(s)	272, 311
Hsp92II	CATG	4 cut(s)	33, 61, 289, 508
Kpn2I	TCCGGA	1 cut(s)	210
LpnPI	CCDG	6 cut(s)	120, 144, 162, 224, 314, 336
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	26
MboII	GAAGA	2 cut(s)	383, 483
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	5 cut(s)	70, 116, 202, 266, 393
MlyI	GAGTC	2 cut(s)	461, 468
MnlI	CCTC	9 cut(s)	43, 103, 163, 230, 282, 306, 309, 412, 461
Mph1103I	ATGCAT	1 cut(s)	35
MroI	TCCGGA	1 cut(s)	210
MroXI	GAANNNNTTC	2 cut(s)	300, 500
MseI	TTAA	3 cut(s)	119, 155, 185
MspI	CCGG	1 cut(s)	211
NlaIII	CATG	4 cut(s)	33, 61, 289, 508
NsiI	ATGCAT	1 cut(s)	35
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	47
PdmI	GAANNNNTTC	2 cut(s)	300, 500
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	2 cut(s)	460, 468
PpsI	GAGTC	2 cut(s)	460, 468
PsiI	TTATAA	1 cut(s)	353
PspXI	VCTCGAGB	1 cut(s)	47
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	119, 155, 185
SatI	GCNGC	1 cut(s)	54
ScaI	AGTACT	1 cut(s)	309
SchI	GAGTC	2 cut(s)	461, 468
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	5 cut(s)	114, 228, 301, 347, 393
SfaNI	GCATC	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	47, 221
SmoI	CTYRAG	2 cut(s)	47, 221
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	5 cut(s)	70, 116, 202, 266, 393
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	48
TasI	AATT	5 cut(s)	70, 116, 202, 266, 393
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	3 cut(s)	119, 155, 185
Tru9I	TTAA	3 cut(s)	119, 155, 185
TscAI	CASTG	3 cut(s)	330, 371, 462
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	255, 391, 493
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	3 cut(s)	330, 371, 462
XapI	RAATTY	3 cut(s)	70, 202, 266
XceI	RCATGY	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	47
XmnI	GAANNNNTTC	2 cut(s)	300, 500
XspI	CTAG	1 cut(s)	26
ZrmI	AGTACT	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.