Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007689.1

Orthogroup ID

OG0006272

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5565

Gene Structure 5565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007689.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1082 bp

tttggtctcaggcaaacactttgagattgtacttgacctgcatacgcaacactctagatgctgcaatgtgcctgcagaattttccttgtcaagaagttgaaaggcataacaagccagaagttgagttaaagaccagcccagaacttctgctaaatcctgttttgatatgtcgaaatgaggctgaaaaatgcttgattgagacatctattaattcccttcgtataagcctcaaggtaaagcaggcagatgaacttgaaaacatactaactaaaaagtttcttagatttttgtcaatgagggcagaagcatttcaggtattgagaagaaagcccgtacagggttatgacattagctttcttataacaaattatcactgtgaagagatgcagaagcacaagctcattgattttattatacagttcatggaggatattgataaagagattacccagatcggtagaggcccaacaacccactacccaaacccttcgcctcccacccccagatcaaccggttctggccttgcagaagatgcggccttcgcccatcaccgctccggtggccgtccacagtcctcccccatcaagaaagccagaaaaaccccccccttggatctaactcgagaccacctgcaatcgaaagaaaaggacaagagcctacgcacgaagcctccagtgaagccccgacaagctcttcacgcctccacagtaaccagaccgcccagatcggtagaggcccaacaacccattacccaaacccttcgcctcccacccccagatcaaccggttctggccttgcagaagatgcggccttcacccatcaccgctccggtggccgtccacagtcctcccccatcaagaaagccagaaaaaaccccccttggatctaactcgagaccacctgcaatcgaaagaagaagacaagagcctacgcacgaagcctccagtgaagccctgacaagctcttcacgcctccacagtaaccaaaccggcgctactcaccgccccctgcaattcgatgccctccgatcaatgtcacaaatagaggtggcaaacgggccactaagcacgagcatggcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

359

Amino Acids

40.33

Weight (kDa)

9.71

Isoelectric Point (pI)

69.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14147 AT4G14147 AT4G14147
fragaria_vesca	FvH4_4g13710 FvH4_4g13710
malus_domestica	MD04G1012700.v1.1
prunus_persica	Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1
pyrus_communis	pycom04g01010
rosa_chinensis	RchiOBHm_Chr4g0414361 RchiOBHm_Chr7g0213901
rosa_laevigata	RLG00000008152
rosa_multiflora	Rmu_sc0007689.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245660 Rroxscaffold_5G00358230
rosa_rugosa	Rorug04G0127500
rosa_samantha	Rh4AG185400 Rh4BG184900 Rh4CG198200 Rh4DG182700 Rh7AG277500 Rh7CG296600
rosa_wichuraiana	Rw4G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	361
AarI	CACCTGC	2 cut(s)	638, 909
Acc36I	ACCTGC	3 cut(s)	46, 638, 909
AccBSI	CCGCTC	2 cut(s)	554, 826
AciI	CCGC	6 cut(s)	535, 552, 718, 807, 824, 1002
AclWI	GGATC	2 cut(s)	620, 891
AcoI	YGGCCR	2 cut(s)	561, 833
AcsI	RAATTY	1 cut(s)	78
AfaI	GTAC	2 cut(s)	31, 335
AfiI	CCNNNNNNNGG	2 cut(s)	337, 609
AgeI	ACCGGT	2 cut(s)	511, 783
AgsI	TTSAA	2 cut(s)	100, 256
AluBI	AGCT	4 cut(s)	353, 399, 691, 962
AluI	AGCT	4 cut(s)	353, 399, 691, 962
Alw26I	GTCTC	4 cut(s)	11, 193, 617, 888
AlwI	GGATC	2 cut(s)	620, 891
Ama87I	CYCGRG	2 cut(s)	620, 891
AoxI	GGCC	9 cut(s)	462, 519, 536, 561, 734, 791, 808, 833, 1057
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	78
AseI	ATTAAT	1 cut(s)	209
AsiGI	ACCGGT	2 cut(s)	511, 783
Asp700I	GAANNNNTTC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	994
AspS9I	GGNCC	3 cut(s)	463, 735, 1057
AsuHPI	GGTGA	4 cut(s)	541, 806, 813, 991
AvaI	CYCGRG	2 cut(s)	620, 891
BauI	CACGAG	1 cut(s)	1068
BbsI	GAAGAC	1 cut(s)	924
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	4 cut(s)	554, 589, 826, 861
BceAI	ACGGC	2 cut(s)	548, 820
BcoDI	GTCTC	4 cut(s)	11, 193, 617, 888
BfaI	CTAG	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	73
BfoI	RGCGCY	1 cut(s)	995
BfuAI	ACCTGC	3 cut(s)	46, 638, 909
BisI	GCNGC	3 cut(s)	62, 536, 808
BlsI	GCNGC	3 cut(s)	63, 537, 809
BmeT110I	CYCGRG	2 cut(s)	620, 891
BmgT120I	GGNCC	3 cut(s)	463, 735, 1057
BmsI	GCATC	5 cut(s)	48, 374, 522, 794, 1008
BpiI	GAAGAC	1 cut(s)	924
BpmI	CTGGAG	2 cut(s)	656, 927
BpuEI	CTTGAG	1 cut(s)	214
BsaI	GGTCTC	3 cut(s)	11, 617, 888
BsaJI	CCNNGG	2 cut(s)	608, 879
BsaWI	WCCGGW	4 cut(s)	511, 556, 783, 828
BsaXI	ACNNNNNCTCC	4 cut(s)	654, 684, 925, 955
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 609
Bse118I	RCCGGY	3 cut(s)	511, 783, 988
Bse1I	ACTGG	2 cut(s)	673, 944
Bse3DI	GCAATG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	608, 879
BseLI	CCNNNNNNNGG	2 cut(s)	337, 609
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	2 cut(s)	673, 944
BseXI	GCAGC	1 cut(s)	48
BshFI	GGCC	9 cut(s)	464, 521, 538, 563, 736, 793, 810, 835, 1059
BshTI	ACCGGT	2 cut(s)	511, 783
BsiHKCI	CYCGRG	2 cut(s)	620, 891
BsiSI	CCGG	5 cut(s)	512, 557, 784, 829, 989
BslI	CCNNNNNNNGG	2 cut(s)	337, 609
BsmAI	GTCTC	4 cut(s)	11, 193, 617, 888
BsnI	GGCC	9 cut(s)	464, 521, 538, 563, 736, 793, 810, 835, 1059
Bso31I	GGTCTC	3 cut(s)	11, 617, 888
BsoBI	CYCGRG	2 cut(s)	620, 891
Bsp143I	GATC	7 cut(s)	452, 505, 612, 724, 777, 883, 1027
BspACI	CCGC	6 cut(s)	535, 552, 718, 807, 824, 1002
BspANI	GGCC	9 cut(s)	464, 521, 538, 563, 736, 793, 810, 835, 1059
BspCNI	CTCAG	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	77
BspMI	ACCTGC	3 cut(s)	46, 638, 909
BspPI	GGATC	2 cut(s)	620, 891
BspQI	GCTCTTC	2 cut(s)	698, 969
BspTNI	GGTCTC	3 cut(s)	11, 617, 888
BsrBI	CCGCTC	2 cut(s)	554, 826
BsrDI	GCAATG	1 cut(s)	71
BsrFI	RCCGGY	3 cut(s)	511, 783, 988
BsrI	ACTGG	2 cut(s)	673, 944
BssAI	RCCGGY	3 cut(s)	511, 783, 988
BssECI	CCNNGG	2 cut(s)	608, 879
BssMI	GATC	7 cut(s)	452, 505, 612, 724, 777, 883, 1027
BssSI	CACGAG	1 cut(s)	1068
BssT1I	CCWWGG	2 cut(s)	608, 879
Bst2BI	CACGAG	1 cut(s)	1068
Bst4CI	ACNGT	6 cut(s)	376, 419, 572, 708, 844, 979
Bst6I	CTCTTC	3 cut(s)	374, 698, 969
BstAPI	GCANNNNNTGC	2 cut(s)	532, 804
BstC8I	GCNNGC	2 cut(s)	73, 242
BstDEI	CTNAG	3 cut(s)	8, 280, 1063
BstH2I	RGCGCY	1 cut(s)	995
BstHHI	GCGC	1 cut(s)	994
BstKTI	GATC	7 cut(s)	455, 508, 615, 727, 780, 886, 1030
BstMAI	GTCTC	4 cut(s)	11, 193, 617, 888
BstMBI	GATC	7 cut(s)	452, 505, 612, 724, 777, 883, 1027
BstMWI	GCNNNNNNNGC	8 cut(s)	111, 532, 541, 560, 697, 804, 832, 968
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	2 cut(s)	612, 883
BstYI	RGATCY	2 cut(s)	612, 883
BsuRI	GGCC	9 cut(s)	464, 521, 538, 563, 736, 793, 810, 835, 1059
BtsIMutI	CAGTG	3 cut(s)	372, 680, 951
BveI	ACCTGC	3 cut(s)	46, 638, 909
Cac8I	GCNNGC	2 cut(s)	73, 242
CfoI	GCGC	1 cut(s)	994
Cfr10I	RCCGGY	3 cut(s)	511, 783, 988
Cfr13I	GGNCC	3 cut(s)	463, 735, 1057
Csp6I	GTAC	2 cut(s)	30, 334
CspAI	ACCGGT	2 cut(s)	511, 783
CviAII	CATG	3 cut(s)	423, 1074, 1079
CviQI	GTAC	2 cut(s)	30, 334
DdeI	CTNAG	3 cut(s)	8, 280, 1063
DpnI	GATC	7 cut(s)	454, 507, 614, 726, 779, 885, 1029
DpnII	GATC	7 cut(s)	452, 505, 612, 724, 777, 883, 1027
EaeI	YGGCCR	2 cut(s)	561, 833
Eam1104I	CTCTTC	3 cut(s)	374, 698, 969
EarI	CTCTTC	3 cut(s)	374, 698, 969
Eco130I	CCWWGG	2 cut(s)	608, 879
Eco31I	GGTCTC	3 cut(s)	11, 617, 888
Eco88I	CYCGRG	2 cut(s)	620, 891
EcoT14I	CCWWGG	2 cut(s)	608, 879
ErhI	CCWWGG	2 cut(s)	608, 879
FaeI	CATG	3 cut(s)	426, 1077, 1082
FatI	CATG	3 cut(s)	422, 1073, 1078
Fnu4HI	GCNGC	3 cut(s)	62, 536, 808
Fsp4HI	GCNGC	3 cut(s)	62, 536, 808
FspBI	CTAG	1 cut(s)	55
GlaI	GCGC	1 cut(s)	993
GluI	GCNGC	3 cut(s)	62, 536, 808
GsuI	CTGGAG	2 cut(s)	656, 927
HaeII	RGCGCY	1 cut(s)	995
HaeIII	GGCC	9 cut(s)	464, 521, 538, 563, 736, 793, 810, 835, 1059
HapII	CCGG	5 cut(s)	512, 557, 784, 829, 989
HhaI	GCGC	1 cut(s)	994
Hin1II	CATG	3 cut(s)	426, 1077, 1082
Hin6I	GCGC	1 cut(s)	992
HinP1I	GCGC	1 cut(s)	992
HpaII	CCGG	5 cut(s)	512, 557, 784, 829, 989
HphI	GGTGA	4 cut(s)	541, 806, 813, 991
Hpy166II	GTNNAC	2 cut(s)	568, 840
Hpy188I	TCNGA	1 cut(s)	1027
Hpy188III	TCNNGA	6 cut(s)	55, 91, 585, 622, 857, 893
Hpy8I	GTNNAC	2 cut(s)	568, 840
HpyAV	CCTTC	5 cut(s)	226, 497, 549, 769, 821
HpyCH4III	ACNGT	6 cut(s)	376, 419, 572, 708, 844, 979
HpyCH4V	TGCA	9 cut(s)	41, 64, 75, 387, 526, 633, 798, 904, 1011
HpyF10VI	GCNNNNNNNGC	8 cut(s)	111, 532, 541, 560, 697, 804, 832, 968
HpyF3I	CTNAG	3 cut(s)	8, 280, 1063
Hsp92II	CATG	3 cut(s)	426, 1077, 1082
HspAI	GCGC	1 cut(s)	992
Kzo9I	GATC	7 cut(s)	452, 505, 612, 724, 777, 883, 1027
LguI	GCTCTTC	2 cut(s)	698, 969
LmnI	GCTCC	2 cut(s)	559, 831
Lsp1109I	GCAGC	1 cut(s)	48
LweI	GCATC	5 cut(s)	48, 374, 522, 794, 1008
MaeI	CTAG	1 cut(s)	55
MaeIII	GTNAC	3 cut(s)	708, 979, 1034
MalI	GATC	7 cut(s)	454, 507, 614, 726, 779, 885, 1029
MbiI	CCGCTC	2 cut(s)	554, 826
MboI	GATC	7 cut(s)	452, 505, 612, 724, 777, 883, 1027
MboII	GAAGA	8 cut(s)	335, 391, 541, 685, 813, 926, 929, 956
MflI	RGATCY	2 cut(s)	612, 883
MluCI	AATT	4 cut(s)	78, 210, 366, 1012
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	2 cut(s)	127, 209
MslI	CAYNNNNRTG	1 cut(s)	1072
MspI	CCGG	5 cut(s)	512, 557, 784, 829, 989
MwoI	GCNNNNNNNGC	8 cut(s)	111, 532, 541, 560, 697, 804, 832, 968
NdeII	GATC	7 cut(s)	452, 505, 612, 724, 777, 883, 1027
NlaIII	CATG	3 cut(s)	426, 1077, 1082
NmuCI	GTSAC	1 cut(s)	1034
PaeR7I	CTCGAG	2 cut(s)	620, 891
PaqCI	CACCTGC	2 cut(s)	638, 909
PciSI	GCTCTTC	2 cut(s)	698, 969
PdmI	GAANNNNTTC	1 cut(s)	308
PinAI	ACCGGT	2 cut(s)	511, 783
PkrI	GCNGC	3 cut(s)	63, 537, 809
PshBI	ATTAAT	1 cut(s)	209
PsiI	TTATAA	1 cut(s)	361
PspPI	GGNCC	3 cut(s)	463, 735, 1057
PstI	CTGCAG	1 cut(s)	77
PsuI	RGATCY	2 cut(s)	612, 883
RsaI	GTAC	2 cut(s)	31, 335
RsaNI	GTAC	2 cut(s)	30, 334
RseI	CAYNNNNRTG	1 cut(s)	1072
SapI	GCTCTTC	2 cut(s)	698, 969
SaqAI	TTAA	2 cut(s)	127, 209
SatI	GCNGC	3 cut(s)	62, 536, 808
Sau3AI	GATC	7 cut(s)	452, 505, 612, 724, 777, 883, 1027
Sau96I	GGNCC	3 cut(s)	463, 735, 1057
SfaNI	GCATC	5 cut(s)	48, 374, 522, 794, 1008
SfcI	CTRYAG	1 cut(s)	73
Sfr274I	CTCGAG	2 cut(s)	620, 891
SlaI	CTCGAG	2 cut(s)	620, 891
SmiMI	CAYNNNNRTG	1 cut(s)	1072
SmlI	CTYRAG	3 cut(s)	229, 620, 891
SmoI	CTYRAG	3 cut(s)	229, 620, 891
Sse9I	AATT	4 cut(s)	78, 210, 366, 1012
SsiI	CCGC	6 cut(s)	535, 552, 718, 807, 824, 1002
SspMI	CTAG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	608, 879
TaaI	ACNGT	6 cut(s)	376, 419, 572, 708, 844, 979
TaqI	TCGA	6 cut(s)	171, 621, 637, 892, 908, 1016
TasI	AATT	4 cut(s)	78, 210, 366, 1012
TatI	WGTACW	1 cut(s)	29
TauI	GCSGC	2 cut(s)	538, 810
Tru1I	TTAA	2 cut(s)	127, 209
Tru9I	TTAA	2 cut(s)	127, 209
TscAI	CASTG	3 cut(s)	379, 680, 951
TseFI	GTSAC	1 cut(s)	1034
TseI	GCWGC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	1034
TspDTI	ATGAA	2 cut(s)	263, 411
TspRI	CASTG	3 cut(s)	379, 680, 951
VspI	ATTAAT	1 cut(s)	209
XapI	RAATTY	1 cut(s)	78
XbaI	TCTAGA	1 cut(s)	54
XhoI	CTCGAG	2 cut(s)	620, 891
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.