Prupe.1G158800_v2.0.a1

Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
12577240 .. 12581845
4606 bp
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UTR
Exon/CDS
Intron
Prupe.1G158800.3

Sequence Viewer

Length: 540 bp
ATGTCGAATACTTTGCGATTGTACTTGACGTGTATAAGGAACACTCTCGATGCCGCAATGTGCCTTCAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAACAAGCCGGAAGTTGAGCTAAAGACCAGCTCAGAACTTCTGCTAAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAATGCTTAATTGAGACATCTATTAATTCCCTTCGCATAAGCCTCAAGGTAAAGCAGGCAGATGAACTTGAAAATATACTAACTAAAAAATTTCTTAGATTTTTATCGATGAGGGCAGAAGCATTCCAGGTATTGAGGAGAAAGCCAGTGCAGGGTTATGATATTAGTTTTCTTGTAACAAATTACCATTGCGAGGAGATGCAGAAGCACAAGCTCATTGATTTTATTGCACAGTTCATGGAGGATATTGATAAAGAGATAAGTGAATTAAAGATGTCAGTGAACACACGGGGGAGGCTGGTGGCCACAGAGTTTTTGAAACAATTTATACGTCCCACCATGTTTAATGAACCACTAGTGTAA

Protein Analysis

180

Amino Acids

20.98

Weight (kDa)

7.59

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 54
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 2 cut(s) 70, 266
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 329, 370
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 3 cut(s) 92, 248, 496
AhlI ACTAGT 1 cut(s) 532
AjiI CACGTC 1 cut(s) 30
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 118, 129, 391
AluI AGCT 3 cut(s) 118, 129, 391
Alw26I GTCTC 1 cut(s) 185
AoxI GGCC 1 cut(s) 480
ApoI RAATTY 2 cut(s) 70, 266
AseI ATTAAT 1 cut(s) 201
BalI TGGCCA 1 cut(s) 482
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 185
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 1 cut(s) 533
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
Bme1390I CCNGG 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 40, 366
BpuEI CTTGAG 1 cut(s) 206
Bsa29I ATCGAT 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 370
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 63, 364
Bse8I GATNNNNATC 1 cut(s) 280
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 284
BseJI GATNNNNATC 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 329, 370
BseMI GCAATG 2 cut(s) 63, 364
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 328, 386
BsgI GTGCAG 1 cut(s) 347
BshFI GGCC 1 cut(s) 482
BshVI ATCGAT 1 cut(s) 284
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 329, 370
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 1 cut(s) 482
BspACI CCGC 1 cut(s) 54
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 1 cut(s) 143
BspDI ATCGAT 1 cut(s) 284
BsrDI GCAATG 2 cut(s) 63, 364
BsrI ACTGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 130, 272
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
Bsu15I ATCGAT 1 cut(s) 284
BsuRI GGCC 1 cut(s) 482
BsuTUI ATCGAT 1 cut(s) 284
BtrI CACGTC 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 330, 462
Cac8I GCNNGC 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 284
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 415, 517
CviJI RGCY 9 cut(s) 106, 118, 129, 173, 219, 322, 391, 475, 482
CviKI_1 RGCY 9 cut(s) 106, 118, 129, 173, 219, 322, 391, 475, 482
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 2 cut(s) 130, 272
EaeI YGGCCR 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 303
FaeI CATG 2 cut(s) 418, 520
FaiI YATR 9 cut(s) 35, 99, 160, 215, 254, 336, 416, 506, 518
FaqI GGGAC 1 cut(s) 495
FatI CATG 2 cut(s) 414, 516
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 533
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 418, 520
HpaII CCGG 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 460
Hpy188I TCNGA 2 cut(s) 69, 133
Hpy188III TCNNGA 2 cut(s) 47, 83
Hpy8I GTNNAC 1 cut(s) 460
HpyAV CCTTC 2 cut(s) 74, 218
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 2 cut(s) 29, 508
HpyCH4V TGCA 3 cut(s) 328, 379, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 130, 272
HpySE526I ACGT 2 cut(s) 29, 508
Hsp92II CATG 2 cut(s) 418, 520
LpnPI CCDG 9 cut(s) 120, 139, 162, 218, 290, 314, 317, 336, 461
LweI GCATC 2 cut(s) 40, 366
MaeI CTAG 1 cut(s) 533
MaeII ACGT 2 cut(s) 29, 508
MaeIII GTNAC 1 cut(s) 352
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 7 cut(s) 70, 186, 202, 266, 358, 443, 500
MluNI TGGCCA 1 cut(s) 482
MnlI CCTC 7 cut(s) 163, 230, 282, 306, 364, 412, 465
Mox20I TGGCCA 1 cut(s) 482
MscI TGGCCA 1 cut(s) 482
MseI TTAA 4 cut(s) 185, 201, 446, 522
Msp20I TGGCCA 1 cut(s) 482
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 103
NlaIII CATG 2 cut(s) 418, 520
PctI GAATGC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SaqAI TTAA 4 cut(s) 185, 201, 446, 522
SatI GCNGC 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 305
SetI ASST 7 cut(s) 32, 120, 131, 228, 309, 393, 511
SfaNI GCATC 2 cut(s) 40, 366
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 532
Sse9I AATT 7 cut(s) 70, 186, 202, 266, 358, 443, 500
SsiI CCGC 1 cut(s) 54
SspMI CTAG 1 cut(s) 533
StyD4I CCNGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 2 cut(s) 32, 511
TaqI TCGA 4 cut(s) 5, 48, 163, 284
TasI AATT 7 cut(s) 70, 186, 202, 266, 358, 443, 500
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 56
Tru1I TTAA 4 cut(s) 185, 201, 446, 522
Tru9I TTAA 4 cut(s) 185, 201, 446, 522
TscAI CASTG 2 cut(s) 330, 462
TspDTI ATGAA 3 cut(s) 255, 403, 540
TspRI CASTG 2 cut(s) 330, 462
VspI ATTAAT 1 cut(s) 201
XapI RAATTY 2 cut(s) 70, 266
XspI CTAG 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.