Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006272

Physical Location & Seq

Genomic Coordinates Reverse (-)

32376303 .. 32380610

Gene Structure 4308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGTAGTGATTTTGATTTCGCTTTTTGGTCTCAGGCAAACACTTTGAGATTGTACTTGACCTGTATACGCAACACTCTAGATGCAGCAATGTGCCTGCAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAACAAGCCAGAAGTTGAGTTAAAGACCAGCCCAGAACTTCTGCTAAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAATGCTTGATTGAGACATCTATTAATTCCCTTCGTATAAGCCTCAAGGTAAAGCAGGCAGATGAACTTGAAAACATACTAACTAAAAAGTTTCTTAGATTTTTGTCAATGAGGGCAGAAGCATTTCAGGTATTGAGAAGAAAGCCCGTACAGGGTTATGACATTAGCTTTCTTATAACAAATTATCACTGTGAAGAGATGCAGAAGCACAAGCTCATTGATTTTATTATACAGTTCATGGAGGATATTGATAAGGAGATTAGTGAGTTAAAGATGTCAGTGAACACACGAGGCAGACTGGTGGCTACGGAGTTTCTTAAACAATTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

180

Amino Acids

21.13

Weight (kDa)

6.33

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARPC4	PF05856	13 - 178	5.3e-81	ARP2/3 complex 20 kDa subunit (ARPC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14147 AT4G14147 AT4G14147
fragaria_vesca	FvH4_4g13710 FvH4_4g13710
malus_domestica	MD04G1012700.v1.1
prunus_persica	Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1
pyrus_communis	pycom04g01010
rosa_chinensis	RchiOBHm_Chr4g0414361 RchiOBHm_Chr7g0213901
rosa_laevigata	RLG00000008152
rosa_multiflora	Rmu_sc0007689.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245660 Rroxscaffold_5G00358230
rosa_rugosa	Rorug04G0127500
rosa_samantha	Rh4AG185400 Rh4BG184900 Rh4CG198200 Rh4DG182700 Rh7AG277500 Rh7CG296600
rosa_wichuraiana	Rw4G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	103
AfaI	GTAC	2 cut(s)	56, 360
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	125, 281
AluBI	AGCT	2 cut(s)	378, 424
AluI	AGCT	2 cut(s)	378, 424
Alw26I	GTCTC	2 cut(s)	36, 218
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	103
AseI	ATTAAT	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	36, 218
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmsI	GCATC	2 cut(s)	73, 399
BpuEI	CTTGAG	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	513
Bse3DI	GCAATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	513
BseXI	GCAGC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	2 cut(s)	36, 218
Bso31I	GGTCTC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	513
BssNAI	GTATAC	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	498
Bst1107I	GTATAC	1 cut(s)	68
Bst2BI	CACGAG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	401, 444
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	98, 267
BstDEI	CTNAG	2 cut(s)	33, 305
BstMAI	GTCTC	2 cut(s)	36, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	397, 495
Cac8I	GCNNGC	2 cut(s)	98, 267
Csp6I	GTAC	2 cut(s)	55, 359
CviAII	CATG	1 cut(s)	448
CviJI	RGCY	8 cut(s)	139, 162, 206, 252, 355, 378, 424, 515
CviKI_1	RGCY	8 cut(s)	139, 162, 206, 252, 355, 378, 424, 515
CviQI	GTAC	2 cut(s)	55, 359
DdeI	CTNAG	2 cut(s)	33, 305
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	36
FaeI	CATG	1 cut(s)	451
FaiI	YATR	9 cut(s)	68, 132, 193, 248, 287, 369, 386, 440, 449
FatI	CATG	1 cut(s)	447
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	451
Hpy166II	GTNNAC	2 cut(s)	68, 493
Hpy188III	TCNNGA	2 cut(s)	80, 116
Hpy8I	GTNNAC	2 cut(s)	68, 493
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	401, 444
HpyCH4V	TGCA	3 cut(s)	86, 100, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	2 cut(s)	33, 305
Hsp92II	CATG	1 cut(s)	451
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	73, 399
MaeI	CTAG	1 cut(s)	80
MboII	GAAGA	2 cut(s)	360, 416
MluCI	AATT	4 cut(s)	103, 235, 391, 533
MnlI	CCTC	5 cut(s)	196, 263, 315, 445, 494
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	4 cut(s)	152, 234, 479, 528
MwoI	GCNNNNNNNGC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	88
PshBI	ATTAAT	1 cut(s)	234
PsiI	TTATAA	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	102
RsaI	GTAC	2 cut(s)	56, 360
RsaNI	GTAC	2 cut(s)	55, 359
SaqAI	TTAA	4 cut(s)	152, 234, 479, 528
SatI	GCNGC	1 cut(s)	87
SetI	ASST	5 cut(s)	65, 261, 342, 380, 426
SfaNI	GCATC	2 cut(s)	73, 399
SfcI	CTRYAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	103, 235, 391, 533
SspMI	CTAG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	401, 444
TaqI	TCGA	1 cut(s)	196
TasI	AATT	4 cut(s)	103, 235, 391, 533
TatI	WGTACW	1 cut(s)	54
Tru1I	TTAA	4 cut(s)	152, 234, 479, 528
Tru9I	TTAA	4 cut(s)	152, 234, 479, 528
TscAI	CASTG	2 cut(s)	404, 495
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	288, 436, 526
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	404, 495
VspI	ATTAAT	1 cut(s)	234
XapI	RAATTY	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.