Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006272

Physical Location & Seq

Genomic Coordinates Reverse (-)

42268658 .. 42273197

Gene Structure 4540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG198200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTTGTGATGTGTGCACCCTGCAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAACAAGCCAGAAGTTGAGTTAAAGACCAGCCCAGAACTTCTGCTAAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAATGCTTGATTGAGACATCTATTAATTCCCTTCGTATAAGCCTCAAGGTAAAGCAGGCAGATGAACTTGAAAACATACTAACTAAAAAGTTTCTTAGATTTTTGTCAATGAGGGCAGAAGCATTTCAGGTATTGAGAAGAAAGCCCGTGCAGGGTTATGACATTAGCTTTCTTATAACAAATTATCACTGTGAAGAGATGCAGAAGCACAAGCTCATTGATTTTATTATACAGTTCATGGAGGATATTGATAAAGAGATTAGTGAGTTAAAGATGTCAGTGAACACACGAGGCAGGCTGGTGGCTACGGAGTTTCTTAAACAATTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

155

Amino Acids

18.19

Weight (kDa)

6.33

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARPC4	PF05856	7 - 153	5.1e-72	ARP2/3 complex 20 kDa subunit (ARPC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14147 AT4G14147 AT4G14147
fragaria_vesca	FvH4_4g13710 FvH4_4g13710
malus_domestica	MD04G1012700.v1.1
prunus_persica	Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1
pyrus_communis	pycom04g01010
rosa_chinensis	RchiOBHm_Chr4g0414361 RchiOBHm_Chr7g0213901
rosa_laevigata	RLG00000008152
rosa_multiflora	Rmu_sc0007689.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245660 Rroxscaffold_5G00358230
rosa_rugosa	Rorug04G0127500
rosa_samantha	Rh4AG185400 Rh4BG184900 Rh4CG198200 Rh4DG182700 Rh7AG277500 Rh7CG296600
rosa_wichuraiana	Rw4G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	28
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	50, 206
AluBI	AGCT	2 cut(s)	303, 349
AluI	AGCT	2 cut(s)	303, 349
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	16
ApaLI	GTGCAC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	28
AseI	ATTAAT	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	20
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	20
BsgI	GTGCAG	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmAI	GTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	20
BspMAI	CTGCAG	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	423
Bst4CI	ACNGT	2 cut(s)	326, 369
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	2 cut(s)	192, 431
BstDEI	CTNAG	1 cut(s)	230
BstMAI	GTCTC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	20
BtsIMutI	CAGTG	2 cut(s)	322, 420
Cac8I	GCNNGC	2 cut(s)	192, 431
CviAII	CATG	1 cut(s)	373
DdeI	CTNAG	1 cut(s)	230
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
FaeI	CATG	1 cut(s)	376
FaiI	YATR	8 cut(s)	57, 118, 173, 212, 294, 311, 365, 374
FatI	CATG	1 cut(s)	372
Hin1II	CATG	1 cut(s)	376
Hpy166II	GTNNAC	2 cut(s)	18, 418
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	2 cut(s)	18, 418
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	2 cut(s)	326, 369
HpyCH4V	TGCA	4 cut(s)	18, 25, 286, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	376
LweI	GCATC	1 cut(s)	324
MboII	GAAGA	2 cut(s)	285, 341
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	4 cut(s)	28, 160, 316, 458
MnlI	CCTC	5 cut(s)	121, 188, 240, 370, 419
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	4 cut(s)	77, 159, 404, 453
MwoI	GCNNNNNNNGC	1 cut(s)	61
NlaIII	CATG	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	258
PshBI	ATTAAT	1 cut(s)	159
PsiI	TTATAA	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	77, 159, 404, 453
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	4 cut(s)	186, 267, 305, 351
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	4 cut(s)	28, 160, 316, 458
TaaI	ACNGT	2 cut(s)	326, 369
TaqI	TCGA	1 cut(s)	121
TasI	AATT	4 cut(s)	28, 160, 316, 458
Tru1I	TTAA	4 cut(s)	77, 159, 404, 453
Tru9I	TTAA	4 cut(s)	77, 159, 404, 453
TscAI	CASTG	2 cut(s)	329, 420
TspDTI	ATGAA	2 cut(s)	213, 361
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	2 cut(s)	329, 420
VneI	GTGCAC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.