Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006272

Physical Location & Seq

Genomic Coordinates Forward (+)

887566 .. 891121

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01010.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGATTGGAGGATTCAGCAAGGATCCTCTCTCCATATTATTAACCCTTCTGTCAGTTTATCCGTCGCTGGTTCGAATCCGGCAGGTCGGATATTTCTTCTTTTTTTACTTCCCCTTTTTCAATTTCCTTATCAACGCTCTGAACCCCCGATCGCTGATTGCTCCCTCCTTCTCTCGCTCGCCATACATCTTTTTTACCCTTTCTCTCTCTCGCCTGAACCAGTCCCTCTTCTCTTCTCTGCTCTGCTCTGCTCCAAACATGTCGAACTCATTGCGATTGTACTTGGCGTGTATAAGGAACACTCTCGATGCCGCATTGTGTCTACAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAACAAGCCGGAAGTTGAGCTGAAGACCAGCTCGGAACTTCTGCTAAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAATGCTTAATAGAGACATCTATAAATTCCCTTCGGATAAGCCTCAAGGTAAAGCAGGCAGATGAGCTTGAAAATATACTCACTAAAAAATTTCTTAGATTTTTGTCGATGAGAGCAGAAGCATTTCAGGTGTTGAGGAGAAAGCCAGTGCAGGGTTATGATATTAGTTTTCTTGTAACAAATTATCATTGCGAGGAGATGCAGAAGCACAAGCTCATCGATTTCATTGTACAGTTCATGGAGGATATTGATAAGGAGATAAGTGAGTTAAAGATGTCAGTGAACACCCGGGGGAGGCTGGTCGCCACAGAGTTTCTGAAACAATTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

256

Amino Acids

29.58

Weight (kDa)

8.95

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14147 AT4G14147 AT4G14147
fragaria_vesca	FvH4_4g13710 FvH4_4g13710
malus_domestica	MD04G1012700.v1.1
prunus_persica	Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1
pyrus_communis	pycom04g01010
rosa_chinensis	RchiOBHm_Chr4g0414361 RchiOBHm_Chr7g0213901
rosa_laevigata	RLG00000008152
rosa_multiflora	Rmu_sc0007689.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245660 Rroxscaffold_5G00358230
rosa_rugosa	Rorug04G0127500
rosa_samantha	Rh4AG185400 Rh4BG184900 Rh4CG198200 Rh4DG182700 Rh7AG277500 Rh7CG296600
rosa_wichuraiana	Rw4G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	2 cut(s)	17, 30
AcsI	RAATTY	3 cut(s)	328, 460, 524
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	281, 666
AfiI	CCNNNNNNNGG	2 cut(s)	587, 729
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	121, 350, 506
AluBI	AGCT	4 cut(s)	376, 387, 502, 649
AluI	AGCT	4 cut(s)	376, 387, 502, 649
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	2 cut(s)	17, 30
Ama87I	CYCGRG	1 cut(s)	723
ApoI	RAATTY	3 cut(s)	328, 460, 524
Asp700I	GAANNNNTTC	1 cut(s)	558
AsuC2I	CCSGG	2 cut(s)	724, 725
AsuII	TTCGAA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	723
BamHI	GGATCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	386
BcgI	CGANNNNNNTGC	2 cut(s)	253, 287
BcnI	CCSGG	2 cut(s)	724, 725
BcoDI	GTCTC	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	724, 725
BmeT110I	CYCGRG	1 cut(s)	723
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	724, 725
BmsI	GCATC	2 cut(s)	298, 624
BpiI	GAAGAC	1 cut(s)	386
Bpu14I	TTCGAA	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	2 cut(s)	724, 725
Bsa29I	ATCGAT	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	723, 724
Bsc4I	CCNNNNNNNGG	2 cut(s)	587, 729
Bse1I	ACTGG	2 cut(s)	220, 581
Bse3DI	GCAATG	2 cut(s)	269, 622
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	723, 724
BseLI	CCNNNNNNNGG	2 cut(s)	587, 729
BseMI	GCAATG	2 cut(s)	269, 622
BseNI	ACTGG	2 cut(s)	220, 581
BseRI	GAGGAG	2 cut(s)	586, 644
BsgI	GTGCAG	1 cut(s)	605
Bsh1285I	CGRYCG	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	654
BsiEI	CGRYCG	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	3 cut(s)	79, 365, 724
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	587, 729
BsmAI	GTCTC	1 cut(s)	443
BsmFI	GGGAC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	723
Bsp119I	TTCGAA	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	22, 149
BspACI	CCGC	1 cut(s)	312
BspDI	ATCGAT	1 cut(s)	654
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	73
BspPI	GGATC	2 cut(s)	17, 30
BspT104I	TTCGAA	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	269, 622
BsrGI	TGTACA	1 cut(s)	664
BsrI	ACTGG	2 cut(s)	220, 581
BssECI	CCNNGG	2 cut(s)	723, 724
BssMI	GATC	2 cut(s)	22, 149
Bst4CI	ACNGT	1 cut(s)	669
Bst6I	CTCTTC	2 cut(s)	233, 238
BstAUI	TGTACA	1 cut(s)	664
BstBI	TTCGAA	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	179, 492
BstDEI	CTNAG	1 cut(s)	530
BstKTI	GATC	2 cut(s)	25, 152
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	22, 149
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	722, 723
BstSFI	CTRYAG	1 cut(s)	323
BstV2I	GAAGAC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	654
BsuTUI	ATCGAT	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	588, 720
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	179, 492
Cfr9I	CCCGGG	1 cut(s)	723
ClaI	ATCGAT	1 cut(s)	654
Csp6I	GTAC	2 cut(s)	280, 665
CviAII	CATG	2 cut(s)	259, 673
CviJI	RGCY	9 cut(s)	364, 376, 387, 431, 477, 502, 580, 649, 733
CviKI_1	RGCY	9 cut(s)	364, 376, 387, 431, 477, 502, 580, 649, 733
CviQI	GTAC	2 cut(s)	280, 665
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	2 cut(s)	24, 151
DpnII	GATC	2 cut(s)	22, 149
Eam1104I	CTCTTC	2 cut(s)	233, 238
EarI	CTCTTC	2 cut(s)	233, 238
Eco57I	CTGAAG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	723
FaeI	CATG	2 cut(s)	262, 676
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	2 cut(s)	258, 672
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HapII	CCGG	3 cut(s)	79, 365, 724
Hin1II	CATG	2 cut(s)	262, 676
HinfI	GANTC	2 cut(s)	12, 75
HpaII	CCGG	3 cut(s)	79, 365, 724
Hpy166II	GTNNAC	2 cut(s)	323, 718
Hpy188I	TCNGA	5 cut(s)	89, 141, 391, 471, 753
Hpy188III	TCNNGA	2 cut(s)	305, 341
Hpy8I	GTNNAC	2 cut(s)	323, 718
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	56, 178, 476
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4V	TGCA	2 cut(s)	586, 637
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	1 cut(s)	530
Hsp92II	CATG	2 cut(s)	262, 676
Kzo9I	GATC	2 cut(s)	22, 149
LmnI	GCTCC	2 cut(s)	166, 256
LweI	GCATC	2 cut(s)	298, 624
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	2 cut(s)	24, 151
MboI	GATC	2 cut(s)	22, 149
MboII	GAAGA	4 cut(s)	88, 220, 225, 391
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	6 cut(s)	121, 328, 460, 524, 616, 758
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	9 cut(s)	36, 175, 236, 421, 488, 564, 622, 670, 723
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	3 cut(s)	41, 443, 704
MspI	CCGG	3 cut(s)	79, 365, 724
MspR9I	CCNGG	2 cut(s)	724, 725
MwoI	GCNNNNNNNGC	1 cut(s)	361
NciI	CCSGG	2 cut(s)	724, 725
NdeII	GATC	2 cut(s)	22, 149
NlaIII	CATG	2 cut(s)	262, 676
NlaIV	GGNNCC	1 cut(s)	24
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	73
PciI	ACATGT	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	12, 75
PkrI	GCNGC	1 cut(s)	313
Ple19I	CGATCG	1 cut(s)	152
PscI	ACATGT	1 cut(s)	258
PspN4I	GGNNCC	1 cut(s)	24
PsuI	RGATCY	1 cut(s)	22
PvuI	CGATCG	1 cut(s)	152
RsaI	GTAC	2 cut(s)	281, 666
RsaNI	GTAC	2 cut(s)	280, 665
SaqAI	TTAA	3 cut(s)	41, 443, 704
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	22, 149
ScrFI	CCNGG	2 cut(s)	724, 725
SetI	ASST	7 cut(s)	87, 378, 389, 486, 504, 567, 651
SfaNI	GCATC	2 cut(s)	298, 624
SfcI	CTRYAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	73
SmaI	CCCGGG	1 cut(s)	725
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	6 cut(s)	121, 328, 460, 524, 616, 758
SsiI	CCGC	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	722, 723
TaaI	ACNGT	1 cut(s)	669
TaqI	TCGA	6 cut(s)	73, 263, 306, 421, 542, 654
TasI	AATT	6 cut(s)	121, 328, 460, 524, 616, 758
TatI	WGTACW	2 cut(s)	279, 664
TauI	GCSGC	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	12, 75
Tru1I	TTAA	3 cut(s)	41, 443, 704
Tru9I	TTAA	3 cut(s)	41, 443, 704
TscAI	CASTG	2 cut(s)	588, 720
TspDTI	ATGAA	2 cut(s)	649, 661
TspGWI	ACGGA	1 cut(s)	51
TspMI	CCCGGG	1 cut(s)	723
TspRI	CASTG	2 cut(s)	588, 720
XapI	RAATTY	3 cut(s)	328, 460, 524
XceI	RCATGY	1 cut(s)	262
XmaI	CCCGGG	1 cut(s)	723
XmiI	GTMKAC	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.