Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006272

Physical Location & Seq

Genomic Coordinates Forward (+)

1410600 .. 1413714

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1012700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCGAACTCATTGCGATTGTACTTGGCGTGTATAAGGAACACTCTCGATGCCGCAATGTGTCTACAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAACAAGCCGGAAGTTGAGCTGAAGACCAGCTCAGAACTTCTGCTAAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAATGCTTAATAGAGACATCTATAAATTCCCTTCGGATAAGCCTCAAGGTAAAGCAGGCAGATGAGCTTGAAAATATACTCACTAAAAAATTTCTTAGATTTTTGTCGATGAGAGCAGAAGCATTTCAGGTGTTGAGGAGAAAGCCAGTGCAGGGTTATGATATTAGTTTTCTTGTAACAAATTATCATTGCGAGGAGATGCAGAAGCACAAGCTCATCGATTTCATTGTACAGTTCATGGAGGATATTGATAAGGAGATAAGTGAATTAAAGATGTCAGTGAACACCCGGGGGAGGCTGGTTGCCACAGAGTTTCTGAAACAATTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

170

Amino Acids

19.79

Weight (kDa)

7.59

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARPC4	PF05856	1 - 167	1.1e-80	ARP2/3 complex 20 kDa subunit (ARPC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14147 AT4G14147 AT4G14147
fragaria_vesca	FvH4_4g13710 FvH4_4g13710
malus_domestica	MD04G1012700.v1.1
prunus_persica	Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1
pyrus_communis	pycom04g01010
rosa_chinensis	RchiOBHm_Chr4g0414361 RchiOBHm_Chr7g0213901
rosa_laevigata	RLG00000008152
rosa_multiflora	Rmu_sc0007689.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245660 Rroxscaffold_5G00358230
rosa_rugosa	Rorug04G0127500
rosa_samantha	Rh4AG185400 Rh4BG184900 Rh4CG198200 Rh4DG182700 Rh7AG277500 Rh7CG296600
rosa_wichuraiana	Rw4G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	1 cut(s)	54
AcsI	RAATTY	3 cut(s)	70, 202, 266
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	2 cut(s)	23, 408
AfiI	CCNNNNNNNGG	2 cut(s)	329, 471
AgsI	TTSAA	2 cut(s)	92, 248
AluBI	AGCT	4 cut(s)	118, 129, 244, 391
AluI	AGCT	4 cut(s)	118, 129, 244, 391
Alw26I	GTCTC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	465
ApoI	RAATTY	3 cut(s)	70, 202, 266
Asp700I	GAANNNNTTC	1 cut(s)	300
AsuC2I	CCSGG	2 cut(s)	466, 467
AvaI	CYCGRG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	128
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcnI	CCSGG	2 cut(s)	466, 467
BcoDI	GTCTC	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	466, 467
BmeT110I	CYCGRG	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	466, 467
BmsI	GCATC	2 cut(s)	40, 366
BpiI	GAAGAC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	2 cut(s)	466, 467
Bsa29I	ATCGAT	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	465, 466
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 471
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	3 cut(s)	11, 63, 364
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	465, 466
BseLI	CCNNNNNNNGG	2 cut(s)	329, 471
BseMI	GCAATG	3 cut(s)	11, 63, 364
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	2 cut(s)	328, 386
BsgI	GTGCAG	1 cut(s)	347
BshVI	ATCGAT	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	107, 466
BslI	CCNNNNNNNGG	2 cut(s)	329, 471
BsmAI	GTCTC	1 cut(s)	185
BsoBI	CYCGRG	1 cut(s)	465
Bsp1407I	TGTACA	1 cut(s)	406
BspACI	CCGC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	143
BspDI	ATCGAT	1 cut(s)	396
BsrDI	GCAATG	3 cut(s)	11, 63, 364
BsrGI	TGTACA	1 cut(s)	406
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	465, 466
Bst4CI	ACNGT	1 cut(s)	411
BstAUI	TGTACA	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	2 cut(s)	130, 272
BstMAI	GTCTC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	464, 465
BstSFI	CTRYAG	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	128
Bsu15I	ATCGAT	1 cut(s)	396
BsuTUI	ATCGAT	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	330, 462
Cac8I	GCNNGC	1 cut(s)	234
Cfr9I	CCCGGG	1 cut(s)	465
ClaI	ATCGAT	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	22, 407
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	9 cut(s)	106, 118, 129, 173, 219, 244, 322, 391, 475
CviKI_1	RGCY	9 cut(s)	106, 118, 129, 173, 219, 244, 322, 391, 475
CviQI	GTAC	2 cut(s)	22, 407
DdeI	CTNAG	2 cut(s)	130, 272
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	465
FaeI	CATG	1 cut(s)	418
FaiI	YATR	8 cut(s)	35, 99, 160, 200, 254, 336, 416, 506
FatI	CATG	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	2 cut(s)	107, 466
Hin1II	CATG	1 cut(s)	418
HpaII	CCGG	2 cut(s)	107, 466
Hpy166II	GTNNAC	2 cut(s)	65, 460
Hpy188I	TCNGA	3 cut(s)	133, 213, 495
Hpy188III	TCNNGA	2 cut(s)	47, 83
Hpy8I	GTNNAC	2 cut(s)	65, 460
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4V	TGCA	2 cut(s)	328, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	2 cut(s)	130, 272
Hsp92II	CATG	1 cut(s)	418
LpnPI	CCDG	9 cut(s)	120, 139, 162, 218, 290, 314, 336, 461, 479
LweI	GCATC	2 cut(s)	40, 366
MaeIII	GTNAC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	6 cut(s)	70, 202, 266, 358, 443, 500
MnlI	CCTC	6 cut(s)	163, 230, 306, 364, 412, 465
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	2 cut(s)	185, 446
MspI	CCGG	2 cut(s)	107, 466
MspR9I	CCNGG	2 cut(s)	466, 467
MwoI	GCNNNNNNNGC	1 cut(s)	103
NciI	CCSGG	2 cut(s)	466, 467
NlaIII	CATG	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	23, 408
RsaNI	GTAC	2 cut(s)	22, 407
SaqAI	TTAA	2 cut(s)	185, 446
SatI	GCNGC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	466, 467
SetI	ASST	6 cut(s)	120, 131, 228, 246, 309, 393
SfaNI	GCATC	2 cut(s)	40, 366
SfcI	CTRYAG	1 cut(s)	65
SmaI	CCCGGG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	6 cut(s)	70, 202, 266, 358, 443, 500
SsiI	CCGC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	464, 465
TaaI	ACNGT	1 cut(s)	411
TaqI	TCGA	5 cut(s)	5, 48, 163, 284, 396
TasI	AATT	6 cut(s)	70, 202, 266, 358, 443, 500
TatI	WGTACW	2 cut(s)	21, 406
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	185, 446
Tru9I	TTAA	2 cut(s)	185, 446
TscAI	CASTG	2 cut(s)	330, 462
TspDTI	ATGAA	2 cut(s)	391, 403
TspMI	CCCGGG	1 cut(s)	465
TspRI	CASTG	2 cut(s)	330, 462
XapI	RAATTY	3 cut(s)	70, 202, 266
XmaI	CCCGGG	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	64
XmnI	GAANNNNTTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.