Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006272

Physical Location & Seq

Genomic Coordinates Reverse (-)

30382744 .. 30387145

Gene Structure 4402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG296600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAATTGCTATTACAGGTTTTGATATGTCGAAATGAGGCTGAAAAATGCTTGATTGAGACATCTATTAATTCCCTTCGTATAAGCCTCAAGGTAAAGCAGGCAGATGAACTTGAAAACATACTAACTAAAAAGTTTCTTAGATTTTTGTCAATGAGGGCAGAAGCATTTCAGGTATTGAGAAGAAAGCCCGTACAGGGTTATGACATTAGCTTTCTTATAACAAATTATCACTGTGAAGAGATGCAGAAGCACAAGCTCATTGATTTTATTATACAGTTCATGGAGGATATTGATAAAGAGATTAGTGAGTTAAAGATGTCAGTGAACACACGAGGCAGGCTGGTGGCTACGGAGTTTCTTAAACAATTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

125

Amino Acids

14.81

Weight (kDa)

7.7

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARPC4	PF05856	3 - 123	8.7e-58	ARP2/3 complex 20 kDa subunit (ARPC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14147 AT4G14147 AT4G14147
fragaria_vesca	FvH4_4g13710 FvH4_4g13710
malus_domestica	MD04G1012700.v1.1
prunus_persica	Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1
pyrus_communis	pycom04g01010
rosa_chinensis	RchiOBHm_Chr4g0414361 RchiOBHm_Chr7g0213901
rosa_laevigata	RLG00000008152
rosa_multiflora	Rmu_sc0007689.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245660 Rroxscaffold_5G00358230
rosa_rugosa	Rorug04G0127500
rosa_samantha	Rh4AG185400 Rh4BG184900 Rh4CG198200 Rh4DG182700 Rh7AG277500 Rh7CG296600
rosa_wichuraiana	Rw4G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	2 cut(s)	213, 259
AluI	AGCT	2 cut(s)	213, 259
Alw26I	GTCTC	1 cut(s)	53
AseI	ATTAAT	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	53
BmsI	GCATC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	197
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	53
BssSI	CACGAG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	236, 279
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	2 cut(s)	102, 341
BstDEI	CTNAG	1 cut(s)	140
BstMAI	GTCTC	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	232, 330
Cac8I	GCNNGC	2 cut(s)	102, 341
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	7 cut(s)	41, 87, 190, 213, 259, 343, 350
CviKI_1	RGCY	7 cut(s)	41, 87, 190, 213, 259, 343, 350
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
FaeI	CATG	1 cut(s)	286
FaiI	YATR	7 cut(s)	28, 83, 122, 204, 221, 275, 284
FatI	CATG	1 cut(s)	282
Hin1II	CATG	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	236, 279
HpyCH4V	TGCA	1 cut(s)	247
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	286
LpnPI	CCDG	6 cut(s)	2, 86, 158, 182, 325, 329
LweI	GCATC	1 cut(s)	234
MboII	GAAGA	2 cut(s)	195, 251
MluCI	AATT	4 cut(s)	5, 70, 226, 368
MnlI	CCTC	5 cut(s)	31, 98, 150, 280, 329
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	69, 314, 363
NlaIII	CATG	1 cut(s)	286
PdmI	GAANNNNTTC	1 cut(s)	168
PshBI	ATTAAT	1 cut(s)	69
PsiI	TTATAA	1 cut(s)	221
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	69, 314, 363
SetI	ASST	5 cut(s)	21, 96, 177, 215, 261
SfaNI	GCATC	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	5, 70, 226, 368
TaaI	ACNGT	2 cut(s)	236, 279
TaqI	TCGA	1 cut(s)	31
TasI	AATT	4 cut(s)	5, 70, 226, 368
Tru1I	TTAA	3 cut(s)	69, 314, 363
Tru9I	TTAA	3 cut(s)	69, 314, 363
TscAI	CASTG	2 cut(s)	239, 330
TspDTI	ATGAA	2 cut(s)	123, 271
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	239, 330
VspI	ATTAAT	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.