Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006272

Physical Location & Seq

Genomic Coordinates Reverse (-)

46127085 .. 46228643

Gene Structure 101559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG185400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCAAACACTTTGAGATTGTACTTGACCTGCATACGCAACACTCTAGATGCTGCAATGTGCCTGCAGAATTTTCCTTGTCAAGAAGTTGAAAGGCATAACAAGCCAGAAGTTGAGTTAAAGACCAGCCCAGAACTTCTGCTAAATCCTGTTTTGATATGTCGAAATGAGGCTGAAAAATGCTTGATTGAGACATCTATTAATTCCCTTCGTATAAGCCTCAAGGTAAAGCAGGCAGATGAACTTGAAAACATACTAACTAAAAAGTTTCTTAGATTTTTGTCCATGAGGGCAGAAGCATTTCAGGTATTGAGAAGAAAGCCAGTACAGGGTTATGACATTAGCTTTCTTATAACAAATTATCACTGTGAAGAGATGCAGAAGCACAAGCTCATTGATTTTATTATACAGTTCATGGAGGATATTGATAAAGAGATTAGTGAGTTAAAGATGTCAGTGAACACACGAGGCAGACTGGTGGCTACGGAGTTTCTTAAACAATTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005885 GO:0005938 GO:0006810 GO:0006887 GO:0006897 GO:0006909 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008150 GO:0008154 GO:0009987 GO:0010638 GO:0012506 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030041 GO:0030139 GO:0030175 GO:0030659 GO:0030666 GO:0030670 GO:0030832 GO:0030833 GO:0030838 GO:0030863 GO:0030864 GO:0031090 GO:0031143 GO:0031252 GO:0031334 GO:0031410 GO:0031982 GO:0032271 GO:0032273 GO:0032535 GO:0032940 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034622 GO:0042995 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043232 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044433 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045010 GO:0045335 GO:0046903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051258 GO:0051493 GO:0051495 GO:0065003 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0090066 GO:0097435 GO:0097708 GO:0098588 GO:0098657 GO:0098805 GO:0098858 GO:0099568 GO:0110053 GO:0120025 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ARPC4

Protein Analysis

169

Amino Acids

19.84

Weight (kDa)

7.59

Isoelectric Point (pI)

48.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARPC4	PF05856	1 - 167	5.7e-82	ARP2/3 complex 20 kDa subunit (ARPC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006272)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14147 AT4G14147 AT4G14147
fragaria_vesca	FvH4_4g13710 FvH4_4g13710
malus_domestica	MD04G1012700.v1.1
prunus_persica	Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1 Prupe.1G158800_v2.0.a1
pyrus_communis	pycom04g01010
rosa_chinensis	RchiOBHm_Chr4g0414361 RchiOBHm_Chr7g0213901
rosa_laevigata	RLG00000008152
rosa_multiflora	Rmu_sc0007689.1_g000001
rosa_roxburghii	Rroxscaffold_3G00245660 Rroxscaffold_5G00358230
rosa_rugosa	Rorug04G0127500
rosa_samantha	Rh4AG185400 Rh4BG184900 Rh4CG198200 Rh4DG182700 Rh7AG277500 Rh7CG296600
rosa_wichuraiana	Rw4G015870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	2 cut(s)	23, 327
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	92, 248
AluBI	AGCT	2 cut(s)	345, 391
AluI	AGCT	2 cut(s)	345, 391
Alw26I	GTCTC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	70
AseI	ATTAAT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	465
BbvI	GCAGC	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmsI	GCATC	2 cut(s)	40, 366
BpuEI	CTTGAG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	323, 480
Bse3DI	GCAATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	323, 480
BseXI	GCAGC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	185
BspMAI	CTGCAG	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	323, 480
BssSI	CACGAG	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	368, 411
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	2 cut(s)	65, 234
BstDEI	CTNAG	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	40
BtsIMutI	CAGTG	2 cut(s)	364, 462
BveI	ACCTGC	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	65, 234
Csp6I	GTAC	2 cut(s)	22, 326
CviAII	CATG	2 cut(s)	286, 415
CviJI	RGCY	8 cut(s)	106, 129, 173, 219, 322, 345, 391, 482
CviKI_1	RGCY	8 cut(s)	106, 129, 173, 219, 322, 345, 391, 482
CviQI	GTAC	2 cut(s)	22, 326
DdeI	CTNAG	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
FaeI	CATG	2 cut(s)	289, 418
FatI	CATG	2 cut(s)	285, 414
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	289, 418
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188III	TCNNGA	2 cut(s)	47, 83
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	2 cut(s)	368, 411
HpyCH4V	TGCA	4 cut(s)	33, 56, 67, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	2 cut(s)	289, 418
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	40, 366
MaeI	CTAG	1 cut(s)	47
MboII	GAAGA	2 cut(s)	327, 383
MluCI	AATT	4 cut(s)	70, 202, 358, 500
MnlI	CCTC	5 cut(s)	163, 230, 282, 412, 461
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	4 cut(s)	119, 201, 446, 495
MwoI	GCNNNNNNNGC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	289, 418
PdmI	GAANNNNTTC	1 cut(s)	300
PkrI	GCNGC	1 cut(s)	55
PshBI	ATTAAT	1 cut(s)	201
PsiI	TTATAA	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	69
RsaI	GTAC	2 cut(s)	23, 327
RsaNI	GTAC	2 cut(s)	22, 326
SaqAI	TTAA	4 cut(s)	119, 201, 446, 495
SatI	GCNGC	1 cut(s)	54
SetI	ASST	5 cut(s)	32, 228, 309, 347, 393
SfaNI	GCATC	2 cut(s)	40, 366
SfcI	CTRYAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	4 cut(s)	70, 202, 358, 500
SspMI	CTAG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	368, 411
TaqI	TCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	70, 202, 358, 500
TatI	WGTACW	2 cut(s)	21, 325
Tru1I	TTAA	4 cut(s)	119, 201, 446, 495
Tru9I	TTAA	4 cut(s)	119, 201, 446, 495
TscAI	CASTG	2 cut(s)	371, 462
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	3 cut(s)	255, 403, 493
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	2 cut(s)	371, 462
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.