AT4G15440

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012169
Physical Location & Seq
Forward (+)
8835368 .. 8838676
3309 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15440.1

Sequence Viewer

Length: 1155 bp
ATGGATCTAGTTGATAAAAGAGATGTTCTCATCGGAGACTTCCGGCCTAGCCTTGGGTTCTACGGCGGCGTTCGTGTTGGAGTTTATCTCGACACTACTGAGCCAAAGCACGCCAAGATAAAAGGTTTCGCTATGGAAACACTAAAACGAAGCTCAAAAGTATGGCTACAAGAGCTTCGTTCAAACCTAAACATTTTCTGGGGAACAATCGAATCCGAAATCTCCAAAAACGGTGCCGCTTCATATATCTTCCCTCTCCAACGTTGCATCTTCAGTTTCCTCTGCGCCTCTCTCGCCGGCGTTGACGCTTCCGTATCGCCGGACATCGCTGAGAACGGTTGGAAAACAATCAATACTTGGCTTGCGTTGCAAGTTATTCCCACTGCTAAACTTGGCGTAGTTCCTCAGCCTCTTGAAGAGATTTTACTTCATACTTGGCCTTATCCTTCTCTCTTAATCGCCGGAAATTACAAAAAGCTTTACAATTTCATCGACGAGAACGCCGGAGATTGTCTCCGGTTAGGTCAAGAAGAATTCGGGTTGACCCGAGATGAGGCTATTCAAAATCTTCTCTTTGTTTTAGGTTTTAATGCCTACGGGGGCTTTTCCGTCTTCTTACCTTCTTTGATCGGGAGAATAACCGGCGACAATTCCGGTTTACAGGAGAGGATTAGAACCGAAGTCAGGAGAGTTTGCGGATCCGGGTCGGATCTTAATTTCAAGACGGTTAACGAAATGGAGCTGGTTAAATCCGTGGTTTACGAAACGCTGCGTTTTAGTCCTCCGGTTCCGCTGCAATTCGCACGTGCGAGGAAAGATTTTCAGATAAGTTCACACGATGCTGTTTTTGAGGTCAAGAAAGGTGAGCTTCTTTGTGGTTATCAGCCGCTTGTGATGAGAGACGCTAATGTTTTTGACGAACCGGAGGAATTTAAACCGGACCGGTATGTAGGTGAGACCGGGTCTGAATTGCTGAATTATCTCTACTGGTCTAACGGTCCACAAACCGGTACCCCGAGCGCGTCGAACAAACAGTGTGCAGCTAAGGACATTGTCACTCTCACGGCTTCCTTGCTCGTTGCCGATTTATTTCTCCGGTATGATACGATTACTGGTGACTCCGGTTCAATTAAAGCTGTTGTTAAAGCTAAATAA

Protein Analysis

384

Amino Acids

42.67

Weight (kDa)

5.64

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 219 - 323 5.2e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012169)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15440
fragaria_vesca FvH4_6g42740
malus_domestica MD09G1071400.v1.1 MD17G1100800.v1.1
prunus_persica Prupe.3G213800_v2.0.a1
pyrus_communis pycom09g03470 pycom17g09550
rosa_chinensis RchiOBHm_Chr2g0158631
rosa_laevigata RLG00000021101
rosa_multiflora Rmu_co8067608.1_g000001 Rmu_sc0004188.1_g000015 Rmu_sc0034116.1_g000001
rosa_roxburghii Rroxscaffold_2G00091160
rosa_rugosa Rorug02G0471000
rosa_samantha Rh2AG536700 Rh2BG549900 Rh2CG520400 Rh2DG559500
rosa_wichuraiana Rw2G044430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1010
AccB1I GGYRCC 2 cut(s) 233, 1010
AccII CGCG 1 cut(s) 1022
AciI CCGC 5 cut(s) 66, 237, 696, 791, 887
AclI AACGTT 1 cut(s) 262
AclWI GGATC 4 cut(s) 12, 693, 706, 717
AcsI RAATTY 2 cut(s) 533, 929
AcuI CTGAAG 1 cut(s) 256
AcvI CACGTG 1 cut(s) 806
AfaI GTAC 1 cut(s) 1012
AfiI CCNNNNNNNGG 4 cut(s) 53, 553, 684, 1007
AgeI ACCGGT 2 cut(s) 942, 1007
AgsI TTSAA 5 cut(s) 183, 416, 563, 721, 1128
AluBI AGCT 8 cut(s) 153, 175, 478, 742, 868, 1043, 1136, 1148
AluI AGCT 8 cut(s) 153, 175, 478, 742, 868, 1043, 1136, 1148
Alw26I GTCTC 4 cut(s) 30, 518, 894, 950
AlwI GGATC 4 cut(s) 12, 693, 706, 717
Ama87I CYCGRG 2 cut(s) 546, 1015
AoxI GGCC 2 cut(s) 44, 437
ApeKI GCWGC 3 cut(s) 769, 793, 1040
ApoI RAATTY 2 cut(s) 533, 929
AsiGI ACCGGT 2 cut(s) 942, 1007
Asp718I GGTACC 1 cut(s) 1010
AspLEI GCGC 2 cut(s) 287, 1022
AspS9I GGNCC 2 cut(s) 940, 998
AsuC2I CCSGG 2 cut(s) 703, 961
AsuHPI GGTGA 3 cut(s) 875, 965, 1127
AvaI CYCGRG 2 cut(s) 546, 1015
AvaII GGWCC 2 cut(s) 940, 998
BamHI GGATCC 1 cut(s) 698
BanI GGYRCC 2 cut(s) 233, 1010
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BbrPI CACGTG 1 cut(s) 806
BbsI GAAGAC 1 cut(s) 604
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 3 cut(s) 756, 780, 1052
BceAI ACGGC 2 cut(s) 79, 1080
BcnI CCSGG 2 cut(s) 703, 961
BcoDI GTCTC 4 cut(s) 30, 518, 894, 950
BfaI CTAG 2 cut(s) 8, 48
BisI GCNGC 6 cut(s) 67, 237, 770, 794, 887, 1041
BlsI GCNGC 6 cut(s) 68, 238, 771, 795, 888, 1042
Bme1390I CCNGG 2 cut(s) 703, 961
Bme18I GGWCC 2 cut(s) 940, 998
BmeT110I CYCGRG 2 cut(s) 546, 1015
BmgT120I GGNCC 2 cut(s) 940, 998
BmiI GGNNCC 4 cut(s) 235, 700, 789, 1012
BmrFI CCNGG 2 cut(s) 703, 961
BmsI GCATC 2 cut(s) 276, 829
BpiI GAAGAC 1 cut(s) 604
BplI GAGNNNNNCTC 6 cut(s) 12, 44, 72, 104, 498, 530
Bpu10I CCTNAGC 2 cut(s) 405, 1044
BpuMI CCSGG 2 cut(s) 703, 961
BsaAI YACGTR 1 cut(s) 806
BsaI GGTCTC 1 cut(s) 950
BsaJI CCNNGG 2 cut(s) 52, 753
BsaWI WCCGGW 9 cut(s) 516, 653, 784, 922, 937, 942, 1007, 1095, 1121
Bsc4I CCNNNNNNNGG 4 cut(s) 53, 553, 684, 1007
Bse118I RCCGGY 4 cut(s) 296, 641, 942, 1007
Bse1I ACTGG 2 cut(s) 992, 1117
BseDI CCNNGG 2 cut(s) 52, 753
BseLI CCNNNNNNNGG 4 cut(s) 53, 553, 684, 1007
BseMII CTCAG 3 cut(s) 90, 321, 419
BseNI ACTGG 2 cut(s) 992, 1117
BseXI GCAGC 3 cut(s) 756, 780, 1052
BsgI GTGCAG 1 cut(s) 1059
Bsh1236I CGCG 1 cut(s) 1022
BshFI GGCC 2 cut(s) 46, 439
BshNI GGYRCC 2 cut(s) 233, 1010
BshTI ACCGGT 2 cut(s) 942, 1007
BsiHKCI CYCGRG 2 cut(s) 546, 1015
BslI CCNNNNNNNGG 4 cut(s) 53, 553, 684, 1007
BsmAI GTCTC 4 cut(s) 30, 518, 894, 950
BsmBI CGTCTC 1 cut(s) 894
BsnI GGCC 2 cut(s) 46, 439
Bso31I GGTCTC 1 cut(s) 950
BsoBI CYCGRG 2 cut(s) 546, 1015
Bsp143I GATC 4 cut(s) 4, 627, 698, 709
BspACI CCGC 5 cut(s) 66, 237, 696, 791, 887
BspANI GGCC 2 cut(s) 46, 439
BspCNI CTCAG 3 cut(s) 91, 322, 418
BspFNI CGCG 1 cut(s) 1022
BspLI GGNNCC 4 cut(s) 235, 700, 789, 1012
BspPI GGATC 4 cut(s) 12, 693, 706, 717
BspT107I GGYRCC 2 cut(s) 233, 1010
BspTNI GGTCTC 1 cut(s) 950
BsrFI RCCGGY 4 cut(s) 296, 641, 942, 1007
BsrI ACTGG 2 cut(s) 992, 1117
BssAI RCCGGY 4 cut(s) 296, 641, 942, 1007
BssECI CCNNGG 2 cut(s) 52, 753
BssMI GATC 4 cut(s) 4, 627, 698, 709
BssT1I CCWWGG 1 cut(s) 52
Bst4CI ACNGT 5 cut(s) 233, 338, 727, 998, 1035
Bst6I CTCTTC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 806
BstC8I GCNNGC 3 cut(s) 111, 298, 363
BstDEI CTNAG 4 cut(s) 99, 330, 405, 1044
BstDSI CCRYGG 1 cut(s) 753
BstFNI CGCG 1 cut(s) 1022
BstHHI GCGC 2 cut(s) 287, 1022
BstKTI GATC 4 cut(s) 7, 630, 701, 712
BstMAI GTCTC 4 cut(s) 30, 518, 894, 950
BstMBI GATC 4 cut(s) 4, 627, 698, 709
BstMWI GCNNNNNNNGC 3 cut(s) 172, 293, 367
BstSCI CCNGG 2 cut(s) 701, 959
BstUI CGCG 1 cut(s) 1022
BstV1I GCAGC 3 cut(s) 756, 780, 1052
BstV2I GAAGAC 1 cut(s) 604
BstX2I RGATCY 3 cut(s) 4, 698, 709
BstYI RGATCY 3 cut(s) 4, 698, 709
BsuRI GGCC 2 cut(s) 46, 439
BtgI CCRYGG 1 cut(s) 753
BtgZI GCGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 2 cut(s) 381, 1040
Cac8I GCNNGC 3 cut(s) 111, 298, 363
CfoI GCGC 2 cut(s) 287, 1022
Cfr10I RCCGGY 4 cut(s) 296, 641, 942, 1007
Cfr13I GGNCC 2 cut(s) 940, 998
CpoI CGGWCCG 1 cut(s) 940
CseI GACGC 3 cut(s) 314, 911, 1011
Csp6I GTAC 1 cut(s) 1011
CspAI ACCGGT 2 cut(s) 942, 1007
CspI CGGWCCG 1 cut(s) 940
CviQI GTAC 1 cut(s) 1011
DdeI CTNAG 4 cut(s) 99, 330, 405, 1044
DpnI GATC 4 cut(s) 6, 629, 700, 711
DpnII GATC 4 cut(s) 4, 627, 698, 709
DraI TTTAAA 1 cut(s) 934
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 950
Eco47I GGWCC 2 cut(s) 940, 998
Eco57I CTGAAG 1 cut(s) 256
Eco72I CACGTG 1 cut(s) 806
Eco88I CYCGRG 2 cut(s) 546, 1015
EcoRI GAATTC 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 894
FaiI YATR 7 cut(s) 134, 163, 244, 246, 432, 948, 1101
FalI AAGNNNNNCTT 2 cut(s) 852, 884
Fnu4HI GCNGC 6 cut(s) 67, 237, 770, 794, 887, 1041
Fsp4HI GCNGC 6 cut(s) 67, 237, 770, 794, 887, 1041
FspBI CTAG 2 cut(s) 8, 48
GlaI GCGC 2 cut(s) 286, 1021
GluI GCNGC 6 cut(s) 67, 237, 770, 794, 887, 1041
HaeIII GGCC 2 cut(s) 46, 439
HgaI GACGC 3 cut(s) 314, 911, 1011
HhaI GCGC 2 cut(s) 287, 1022
Hin6I GCGC 2 cut(s) 285, 1020
HinP1I GCGC 2 cut(s) 285, 1020
HincII GTYRAC 3 cut(s) 304, 543, 730
HindII GTYRAC 3 cut(s) 304, 543, 730
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 2 cut(s) 212, 1118
HpaI GTTAAC 1 cut(s) 730
HphI GGTGA 3 cut(s) 875, 965, 1127
Hpy166II GTNNAC 7 cut(s) 304, 543, 659, 730, 760, 833, 1001
Hpy188I TCNGA 5 cut(s) 35, 217, 709, 825, 967
Hpy188III TCNNGA 7 cut(s) 89, 413, 527, 631, 685, 721, 856
Hpy8I GTNNAC 7 cut(s) 304, 543, 659, 730, 760, 833, 1001
Hpy99I CGWCG 2 cut(s) 497, 1027
HpyAV CCTTC 2 cut(s) 456, 630
HpyCH4III ACNGT 5 cut(s) 233, 338, 727, 998, 1035
HpyCH4IV ACGT 2 cut(s) 262, 805
HpyCH4V TGCA 4 cut(s) 267, 370, 796, 1040
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 293, 367
HpyF3I CTNAG 4 cut(s) 99, 330, 405, 1044
HpySE526I ACGT 2 cut(s) 262, 805
HspAI GCGC 2 cut(s) 285, 1020
KpnI GGTACC 1 cut(s) 1014
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 4 cut(s) 4, 627, 698, 709
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 3 cut(s) 756, 780, 1052
LweI GCATC 2 cut(s) 276, 829
MaeI CTAG 2 cut(s) 8, 48
MaeII ACGT 2 cut(s) 262, 805
MaeIII GTNAC 2 cut(s) 1054, 1115
MalI GATC 4 cut(s) 6, 629, 700, 711
MboI GATC 4 cut(s) 4, 627, 698, 709
MboII GAAGA 6 cut(s) 241, 262, 428, 542, 560, 604
MflI RGATCY 3 cut(s) 4, 698, 709
MlyI GAGTC 1 cut(s) 1112
MmeI TCCRAC 4 cut(s) 58, 283, 320, 687
MreI CGCCGGCG 1 cut(s) 296
MroNI GCCGGC 1 cut(s) 296
MseI TTAA 8 cut(s) 455, 588, 714, 729, 747, 933, 1131, 1143
MspA1I CMGCKG 1 cut(s) 793
MspR9I CCNGG 2 cut(s) 703, 961
MvnI CGCG 1 cut(s) 1022
MwoI GCNNNNNNNGC 3 cut(s) 172, 293, 367
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 2 cut(s) 703, 961
NdeII GATC 4 cut(s) 4, 627, 698, 709
NgoMIV GCCGGC 1 cut(s) 296
NlaIV GGNNCC 4 cut(s) 235, 700, 789, 1012
NmuCI GTSAC 2 cut(s) 1054, 1115
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 212
PflFI GACNNNGTC 2 cut(s) 961, 1052
PinAI ACCGGT 2 cut(s) 942, 1007
PkrI GCNGC 6 cut(s) 68, 238, 771, 795, 888, 1042
PleI GAGTC 1 cut(s) 1112
PmaCI CACGTG 1 cut(s) 806
PmlI CACGTG 1 cut(s) 806
PpsI GAGTC 1 cut(s) 1112
Ppu21I YACGTR 1 cut(s) 806
Psp1406I AACGTT 1 cut(s) 262
PspCI CACGTG 1 cut(s) 806
PspN4I GGNNCC 4 cut(s) 235, 700, 789, 1012
PspPI GGNCC 2 cut(s) 940, 998
PsuI RGATCY 3 cut(s) 4, 698, 709
PsyI GACNNNGTC 2 cut(s) 961, 1052
RsaI GTAC 1 cut(s) 1012
RsaNI GTAC 1 cut(s) 1011
Rsr2I CGGWCCG 1 cut(s) 940
RsrII CGGWCCG 1 cut(s) 940
SaqAI TTAA 8 cut(s) 455, 588, 714, 729, 747, 933, 1131, 1143
SatI GCNGC 6 cut(s) 67, 237, 770, 794, 887, 1041
Sau3AI GATC 4 cut(s) 4, 627, 698, 709
Sau96I GGNCC 2 cut(s) 940, 998
SchI GAGTC 1 cut(s) 1112
ScrFI CCNGG 2 cut(s) 703, 961
SfaNI GCATC 2 cut(s) 276, 829
SgrAI CRCCGGYG 1 cut(s) 296
SinI GGWCC 2 cut(s) 940, 998
SsiI CCGC 5 cut(s) 66, 237, 696, 791, 887
SspMI CTAG 2 cut(s) 8, 48
StyD4I CCNGG 2 cut(s) 701, 959
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 5 cut(s) 233, 338, 727, 998, 1035
TaiI ACGT 2 cut(s) 265, 808
TaqI TCGA 4 cut(s) 90, 210, 492, 1025
TauI GCSGC 3 cut(s) 69, 239, 889
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 8 cut(s) 455, 588, 714, 729, 747, 933, 1131, 1143
Tru9I TTAA 8 cut(s) 455, 588, 714, 729, 747, 933, 1131, 1143
TscAI CASTG 2 cut(s) 388, 1040
TseFI GTSAC 2 cut(s) 1054, 1115
TseI GCWGC 3 cut(s) 769, 793, 1040
Tsp45I GTSAC 2 cut(s) 1054, 1115
TspDTI ATGAA 3 cut(s) 231, 419, 478
TspGWI ACGGA 3 cut(s) 301, 598, 742
TspRI CASTG 2 cut(s) 388, 1040
Tth111I GACNNNGTC 2 cut(s) 961, 1052
VpaK11BI GGWCC 2 cut(s) 940, 998
XapI RAATTY 2 cut(s) 533, 929
XspI CTAG 2 cut(s) 8, 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.