Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Forward (+)

60182009 .. 60262948

Gene Structure 80940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0471000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGATGAGGAATTTTTTAGAGAGAATGGGAAGGGAATTGCAGCTCCATCTTTGGTTGATCTGTGCGTTCATGTGGCGATAGATAATATAAGGTACCTTGGGGATGTTGGCGAAACGGATTTCGATTTTCTTGAGCAAATCTTGCCACATTGTACAAAAGACCAGTTGATGCATATCGAGAAGAGTACAAAAGGTAGGGATTTGAGTCCAGTAACTGATAAGTTGTGGAAGAAATTCTATGAGAAGGATTTTGGTATTGACAGGACTAATGTGGTGATCGAAAGGATGAGGAAAAAGAAAGTCAATTTCAGATGGTTGCAATTGTATCAGGCCAAATTGAGGGAAGTGGATGAGGCTGAAAATGAAGCAGCTGACCGGTTGAAGAATTCATATAAAAAAGAAGATGCACGGAAACAAAGTCGCCAAGTTCGTATCTGTGAAAAGGTTCCACCGTCAAGCAATAAAAGAGGTTGGGGTGGAGGAGGCAACTACAATGTTTCCAACACAAAGAGCAACTTGCTGAAGAAAGCAAAATTAGACTATCTTAAAAGTCCTGAGGTGAGAAATGCTGCTGTTATGAAGAGAACAGCGTTCCAGAGGAGTGCCCCTCCCATGAAGAAGTCAAATGGGTTTTCTGGGAACCAACTGGGTTCCTCTTCTAATCAGAGCAAGCCCATTGAGAGGACATTCAAGCCAAAGAAGATGCCGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000793 GO:0000794 GO:0000796 GO:0000799 GO:0000819 GO:0001671 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0008047 GO:0008150 GO:0009987 GO:0010911 GO:0010912 GO:0016043 GO:0019899 GO:0022402 GO:0030234 GO:0030261 GO:0031974 GO:0031981 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044547 GO:0044815 GO:0048285 GO:0050790 GO:0051276 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071103 GO:0071840 GO:0072586 GO:0072587 GO:0098772 GO:0098813 GO:0140014 GO:1903047 GO:2000371 GO:2000373

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

237

Amino Acids

27.25

Weight (kDa)

9.72

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elongin_A	PF06881	34 - 142	1.7e-25	RNA polymerase II transcription factor SIII (Elongin) subunit A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	11, 233, 385
AcuI	CTGAAG	1 cut(s)	542
AfaI	GTAC	3 cut(s)	95, 154, 187
AfiI	CCNNNNNNNGG	2 cut(s)	339, 681
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	382, 691
AluBI	AGCT	2 cut(s)	44, 371
AluI	AGCT	2 cut(s)	44, 371
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	3 cut(s)	41, 368, 569
ApoI	RAATTY	3 cut(s)	11, 233, 385
AsiGI	ACCGGT	1 cut(s)	375
Asp700I	GAANNNNTTC	2 cut(s)	233, 444
Asp718I	GGTACC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	286, 571
AxyI	CCTNAGG	1 cut(s)	555
BaeGI	GKGCMC	1 cut(s)	607
BanI	GGYRCC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	53, 380, 556
BccI	CCATC	2 cut(s)	55, 306
BceAI	ACGGC	1 cut(s)	691
BisI	GCNGC	3 cut(s)	42, 369, 570
BlsI	GCNGC	3 cut(s)	43, 370, 571
BmiI	GGNNCC	4 cut(s)	95, 447, 641, 652
BmrI	ACTGGG	1 cut(s)	656
BmsI	GCATC	3 cut(s)	159, 394, 693
BmuI	ACTGGG	1 cut(s)	656
BplI	GAGNNNNNCTC	2 cut(s)	592, 624
BpuEI	CTTGAG	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	339, 681
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	3 cut(s)	163, 209, 651
Bse21I	CCTNAGG	1 cut(s)	555
Bse8I	GATNNNNATC	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	4 cut(s)	10, 109, 291, 355
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	339, 681
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	163, 209, 651
BseRI	GAGGAG	2 cut(s)	495, 613
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	53, 380, 556
BshFI	GGCC	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	93
BshTI	ACCGGT	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	2 cut(s)	339, 681
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp1407I	TGTACA	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	58, 276
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	547
BspLI	GGNNCC	4 cut(s)	95, 447, 641, 652
BspT107I	GGYRCC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	152
BsrI	ACTGG	3 cut(s)	163, 209, 651
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	58, 276
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	3 cut(s)	176, 575, 661
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstAUI	TGTACA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	671
BstDEI	CTNAG	1 cut(s)	555
BstF5I	GGATG	4 cut(s)	10, 109, 291, 355
BstKTI	GATC	2 cut(s)	61, 279
BstMBI	GATC	2 cut(s)	58, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	3 cut(s)	53, 380, 556
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	4 cut(s)	10, 109, 291, 355
Cac8I	GCNNGC	1 cut(s)	671
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	94, 153, 186
CspAI	ACCGGT	1 cut(s)	375
CviAII	CATG	2 cut(s)	71, 613
CviJI	RGCY	6 cut(s)	44, 332, 356, 371, 673, 694
CviKI_1	RGCY	6 cut(s)	44, 332, 356, 371, 673, 694
CviQI	GTAC	3 cut(s)	94, 153, 186
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	2 cut(s)	60, 278
DpnII	GATC	2 cut(s)	58, 276
Eam1104I	CTCTTC	3 cut(s)	176, 575, 661
EarI	CTCTTC	3 cut(s)	176, 575, 661
Eco130I	CCWWGG	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	542
Eco81I	CCTNAGG	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	2 cut(s)	74, 616
FaiI	YATR	8 cut(s)	72, 89, 174, 240, 391, 393, 578, 614
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	2 cut(s)	70, 612
Fnu4HI	GCNGC	3 cut(s)	42, 369, 570
FokI	GGATG	4 cut(s)	17, 116, 298, 362
Fsp4HI	GCNGC	3 cut(s)	42, 369, 570
GluI	GCNGC	3 cut(s)	42, 369, 570
HaeIII	GGCC	1 cut(s)	332
HapII	CCGG	1 cut(s)	376
Hin1II	CATG	2 cut(s)	74, 616
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	2 cut(s)	286, 571
Hpy188I	TCNGA	2 cut(s)	311, 666
Hpy188III	TCNNGA	4 cut(s)	131, 178, 554, 595
HpyAV	CCTTC	2 cut(s)	25, 238
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	41, 172, 319, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	555
Hsp92II	CATG	2 cut(s)	74, 616
KpnI	GGTACC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	58, 276
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	9 cut(s)	176, 222, 247, 314, 389, 567, 608, 621, 632
Lsp1109I	GCAGC	3 cut(s)	53, 380, 556
LweI	GCATC	3 cut(s)	159, 394, 693
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	60, 278
MboI	GATC	2 cut(s)	58, 276
MboII	GAAGA	9 cut(s)	193, 241, 394, 413, 535, 592, 628, 648, 712
MfeI	CAATTG	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	8 cut(s)	11, 36, 233, 304, 320, 335, 385, 533
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	525
Mph1103I	ATGCAT	1 cut(s)	174
MroXI	GAANNNNTTC	2 cut(s)	233, 444
MseI	TTAA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	2 cut(s)	58, 276
NlaIII	CATG	2 cut(s)	74, 616
NlaIV	GGNNCC	4 cut(s)	95, 447, 641, 652
NsiI	ATGCAT	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	427
PdmI	GAANNNNTTC	2 cut(s)	233, 444
PinAI	ACCGGT	1 cut(s)	375
PkrI	GCNGC	3 cut(s)	43, 370, 571
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PspN4I	GGNNCC	4 cut(s)	95, 447, 641, 652
PstNI	CAGNNNCTG	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	3 cut(s)	95, 154, 187
RsaNI	GTAC	3 cut(s)	94, 153, 186
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	3 cut(s)	42, 369, 570
Sau3AI	GATC	2 cut(s)	58, 276
SchI	GAGTC	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	8 cut(s)	46, 95, 99, 196, 373, 447, 472, 561
SfaNI	GCATC	3 cut(s)	159, 394, 693
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	8 cut(s)	11, 36, 233, 304, 320, 335, 385, 533
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	3 cut(s)	123, 177, 279
TasI	AATT	8 cut(s)	11, 36, 233, 304, 320, 335, 385, 533
TatI	WGTACW	2 cut(s)	152, 185
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TseI	GCWGC	3 cut(s)	41, 368, 569
TspDTI	ATGAA	5 cut(s)	59, 378, 378, 593, 629
TspGWI	ACGGA	2 cut(s)	131, 424
XapI	RAATTY	3 cut(s)	11, 233, 385
XmnI	GAANNNNTTC	2 cut(s)	233, 444
Zsp2I	ATGCAT	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.