Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Forward (+)

69422968 .. 69427846

Gene Structure 4879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG520300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGGCCGACGTCCTAAGCCCCGACCCAACCACCACCCAGAAGCAGCGCCTCTCCATGGCCGCCCGCCTCCAGTCTCCCACCAGCCCCTTCTTCCTCGGCTCCAACGACGACCACCTCGAGCGTGCCCAGGCACGCGCCGCACGCGCCGCCGCGATTCGAAGAAAGTCCCTCGCCCTCAATCGTCAGCCACTGCTTGACGGCCCCGATTCCGATCCCGGCCTCGATAAGCAGCAGATCCTTGAGCTCTTCCAGAATTGTATAAAACTCGCGAGTGAAAACAAAATTAATCAAAAGAATACTTGGGAGCTGAACTTGATTGACCACTTGGCGGAGCTTGTCAAGGTCGAAGAGGAAAAGGATGCCGAGACGAATTTTCAAAAGGCAAGCTGTACTTTGGAAGCTGGAGTGAAGATTTACTCCTTGAGAGTTGATTCAGTTCACTCCGAGGCATACAAGGTCCTTGGTGGGATGAATCGAGCTGGACAAGACAATGAACAAGATACTGGTACGGAGGATGCCAATGCTGACAATGAACAAGATATGGCTACTTCCAAAAAAGAGAGAAAGATGTCACCTTTATCGACACTGGAGTCATCTTTTGAGGCTCTAAATGTGAAAAAGTTTGATGTTGCATTTGCAGTTGATCCACTCTATCATCAGACATCTGCACAATTTGATGAAGGTGGAGCCAGGGGTCTTTTAATGAATAATCTTGGAGTATATGGTAGATGCAGAGTGCTCTTTGACTCATCGGAGGTGCCAGGGAAGTGCATATCATCTGAGAATCAACATGATAAATCAGATACCATTGATCTTTCTTTTGCTAGTGAATATGTTGAAGAGATGGTAACGAACATGCGGATGAAAGATGAAATTTCACCAACTCTCAGGCATTTGATTGATAGATTTGATGAAGATAACAGAAGGCCACCAGATACATATTCATGTGCTCAGGAATCGGCAGAACAAGATGATTCTACCTATAATAATGACATTGACATTGATGGTGGTGTTGCATCTCACAACGATGAGACCCGGGATTATGATCATGATGAGCAAACAAGCATGGTGGAGGAGGAACATAACTACGAAAATACAAGCTTCCCTAGTTATCATGAGGAAAATGAACCAAGTTCTTTCCATGAACCTGATTTTGATGACAGACTTGAGAAAGTTGATGGCTTTTTGTTTTTAAGTCTTGGATTCACTTCAAAACAAAATGCTTGGGCAGGTCCTGATCATTGGAAGTACCAAAAAACTAAAGGTTCCGAGGTGAATCCTCCTGCAGAACCACCATTAACAATTAAGCGACAAAGAAGCAAACAACAGCCTGATATTGATTTCACAAAAGCCTTGGAAGAAGAAATGTCAGATCTATTTGCTCCCCCCAAAAATCCCAAGTTGTTGCTGCTGCCCGCAAATAGAGCAATTTGCAGTACGAAACTTCCTGAGGATTGCCACTATCAACCAGAGGATCTTGTCAAGTTATTCCTTCTACCCAATGTAAAGTGCCTTGGAAGGAGAGGGAGGAAGTCCTCAGATCAATCAAGGCAACAATATGATGATTGTGGGCAATCTTCATTTTGTGATGATGGTGGTGGCCAGTATGATGACGGCCAATATGACGAGGGAAATGTCCATAGTGATGTAGAGGACTTTAGCACACTTGTTTCTCAACCTCGCCAGGTAAACAAAATTGAAGTCCAGTATGACAAGACGTCCAAACAAGTTGATGTCCAGGCTTTGAAAGAAACCCTTTGGGGCCATGTACAAGAAACTGTTCAAAAGTCTACCCAGGTGTGCAACAAATTTTGTTTTATATTCTTCTTATATAGGTTTTTTAGTGTACCATTTTTTTTCTATAGAATAATGGATAAGAAAAATGAAATAACTTATAGGAATAACATAACTTACAGGACGTGTAACATAACTTATAGGAATGCACCTTTATATTCAAATAAAATTAAAAGATACATAAATAGGTATTATTTGCAAACAACTACACGCCTGTTCACCCAAAAAAAAAAAAACGAAAAAAAACTAATACAAGCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000793 GO:0000794 GO:0000796 GO:0000799 GO:0000819 GO:0001671 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0008047 GO:0008150 GO:0009987 GO:0010911 GO:0010912 GO:0016043 GO:0019899 GO:0022402 GO:0030234 GO:0030261 GO:0031974 GO:0031981 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044547 GO:0044815 GO:0048285 GO:0050790 GO:0051276 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071103 GO:0071840 GO:0072586 GO:0072587 GO:0098772 GO:0098813 GO:0140014 GO:1903047 GO:2000371 GO:2000373

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

685

Amino Acids

78.41

Weight (kDa)

5.12

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cnd2	PF05786	28 - 547	9.5e-88	Condensin complex subunit 2
Cnd2	PF05786	546 - 599	2.3e-09	Condensin complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	589
AatII	GACGTC	2 cut(s)	12, 1721
Acc36I	ACCTGC	1 cut(s)	1220
AccB1I	GGYRCC	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	1790
AccII	CGCG	4 cut(s)	135, 144, 152, 269
AciI	CCGC	8 cut(s)	60, 64, 138, 147, 150, 329, 859, 1416
AclWI	GGATC	4 cut(s)	206, 229, 638, 1482
AcoI	YGGCCR	4 cut(s)	3, 57, 1600, 1615
AcsI	RAATTY	3 cut(s)	370, 873, 1808
AcyI	GRCGYC	2 cut(s)	9, 1718
AfaI	GTAC	6 cut(s)	391, 508, 1250, 1438, 1770, 1848
AfiI	CCNNNNNNNGG	2 cut(s)	55, 328
AflIII	ACRYGT	1 cut(s)	1919
AgsI	TTSAA	7 cut(s)	377, 839, 1212, 1700, 1747, 1784, 1956
AhdI	GACNNNNNGTC	1 cut(s)	1717
AjiI	CACGTC	1 cut(s)	1920
AjnI	CCWGG	6 cut(s)	126, 689, 760, 1683, 1737, 1794
AluBI	AGCT	7 cut(s)	244, 307, 334, 387, 401, 479, 1101
AluI	AGCT	7 cut(s)	244, 307, 334, 387, 401, 479, 1101
Alw21I	GWGCWC	3 cut(s)	246, 741, 952
Alw26I	GTCTC	3 cut(s)	78, 359, 1025
AlwI	GGATC	4 cut(s)	206, 229, 638, 1482
AlwNI	CAGNNNCTG	2 cut(s)	190, 1235
Ama87I	CYCGRG	2 cut(s)	116, 1035
AoxI	GGCC	8 cut(s)	3, 57, 199, 217, 926, 1600, 1615, 1762
ApeKI	GCWGC	4 cut(s)	43, 229, 1408, 1411
ApoI	RAATTY	3 cut(s)	370, 873, 1808
ArsI	GACNNNNNNTTYG	2 cut(s)	1686, 1718
AseI	ATTAAT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	1779
AspLEI	GCGC	3 cut(s)	48, 137, 146
AspS9I	GGNCC	4 cut(s)	200, 457, 1232, 1762
AsuC2I	CCSGG	3 cut(s)	216, 1036, 1037
AsuHPI	GGTGA	4 cut(s)	564, 870, 1285, 2005
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	2 cut(s)	116, 1035
AvaII	GGWCC	2 cut(s)	457, 1232
AxyI	CCTNAGG	1 cut(s)	1449
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	1602
BanI	GGYRCC	1 cut(s)	757
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	3 cut(s)	246, 741, 952
BbvI	GCAGC	4 cut(s)	55, 241, 1395, 1398
BccI	CCATC	4 cut(s)	838, 998, 1172, 1586
BceAI	ACGGC	2 cut(s)	214, 1630
BciT130I	CCWGG	6 cut(s)	128, 691, 762, 1685, 1739, 1796
BclI	TGATCA	2 cut(s)	1045, 1237
BcnI	CCSGG	3 cut(s)	216, 1036, 1037
BcoDI	GTCTC	3 cut(s)	78, 359, 1025
BfaI	CTAG	2 cut(s)	825, 1107
BfmI	CTRYAG	2 cut(s)	1284, 1861
BfoI	RGCGCY	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	1220
BglII	AGATCT	1 cut(s)	1372
BisI	GCNGC	8 cut(s)	44, 60, 138, 147, 150, 230, 1409, 1412
BlsI	GCNGC	8 cut(s)	45, 61, 139, 148, 151, 231, 1410, 1413
Bme1390I	CCNGG	9 cut(s)	128, 216, 691, 762, 1036, 1037, 1685, 1739, 1796
Bme18I	GGWCC	2 cut(s)	457, 1232
BmeRI	GACNNNNNGTC	1 cut(s)	1717
BmeT110I	CYCGRG	2 cut(s)	116, 1035
BmgBI	CACGTC	1 cut(s)	1920
BmgT120I	GGNCC	4 cut(s)	200, 457, 1232, 1762
BmiI	GGNNCC	6 cut(s)	100, 202, 688, 759, 1267, 1763
BmrFI	CCNGG	9 cut(s)	128, 216, 691, 762, 1036, 1037, 1685, 1739, 1796
BmsI	GCATC	4 cut(s)	349, 505, 719, 1025
BpmI	CTGGAG	3 cut(s)	53, 423, 608
Bpu10I	CCTNAGC	2 cut(s)	14, 951
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	3 cut(s)	260, 442, 1187
BpuMI	CCSGG	3 cut(s)	216, 1036, 1037
BsaBI	GATNNNNATC	2 cut(s)	210, 1044
BsaHI	GRCGYC	2 cut(s)	9, 1718
BsaI	GGTCTC	1 cut(s)	1025
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 328
Bse1I	ACTGG	5 cut(s)	70, 508, 591, 1603, 1705
Bse21I	CCTNAGG	1 cut(s)	1449
Bse8I	GATNNNNATC	2 cut(s)	210, 1044
BseBI	CCWGG	6 cut(s)	128, 691, 762, 1685, 1739, 1796
BseGI	GGATG	4 cut(s)	364, 474, 520, 867
BseJI	GATNNNNATC	2 cut(s)	210, 1044
BseLI	CCNNNNNNNGG	2 cut(s)	55, 328
BseMII	CTCAG	5 cut(s)	771, 901, 965, 1440, 1551
BseNI	ACTGG	5 cut(s)	70, 508, 591, 1603, 1705
BseRI	GAGGAG	1 cut(s)	1088
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	4 cut(s)	55, 241, 1395, 1398
BsgI	GTGCAG	1 cut(s)	651
Bsh1236I	CGCG	4 cut(s)	135, 144, 152, 269
BshFI	GGCC	8 cut(s)	5, 59, 201, 219, 928, 1602, 1617, 1764
BshNI	GGYRCC	1 cut(s)	757
BsiHKAI	GWGCWC	3 cut(s)	246, 741, 952
BsiHKCI	CYCGRG	2 cut(s)	116, 1035
BsiSI	CCGG	2 cut(s)	216, 1036
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	55, 328
BsmAI	GTCTC	3 cut(s)	78, 359, 1025
BsmBI	CGTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	1945
BsnI	GGCC	8 cut(s)	5, 59, 201, 219, 928, 1602, 1617, 1764
Bso31I	GGTCTC	1 cut(s)	1025
BsoBI	CYCGRG	2 cut(s)	116, 1035
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	4 cut(s)	127, 246, 741, 952
Bsp1407I	TGTACA	1 cut(s)	1768
Bsp143I	GATC	9 cut(s)	211, 234, 643, 811, 1045, 1237, 1372, 1474, 1540
Bsp19I	CCATGG	1 cut(s)	54
Bsp68I	TCGCGA	1 cut(s)	269
BspACI	CCGC	8 cut(s)	60, 64, 138, 147, 150, 329, 859, 1416
BspANI	GGCC	8 cut(s)	5, 59, 201, 219, 928, 1602, 1617, 1764
BspCNI	CTCAG	5 cut(s)	772, 900, 964, 1441, 1550
BspFNI	CGCG	4 cut(s)	135, 144, 152, 269
BspHI	TCATGA	2 cut(s)	1048, 1114
BspLI	GGNNCC	6 cut(s)	100, 202, 688, 759, 1267, 1763
BspMAI	CTGCAG	1 cut(s)	1288
BspMI	ACCTGC	1 cut(s)	1220
BspPI	GGATC	4 cut(s)	206, 229, 638, 1482
BspQI	GCTCTTC	1 cut(s)	251
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	757
BspTNI	GGTCTC	1 cut(s)	1025
BsrGI	TGTACA	1 cut(s)	1768
BsrI	ACTGG	5 cut(s)	70, 508, 591, 1603, 1705
BssMI	GATC	9 cut(s)	211, 234, 643, 811, 1045, 1237, 1372, 1474, 1540
BssNI	GRCGYC	2 cut(s)	9, 1718
BssT1I	CCWWGG	4 cut(s)	54, 460, 1353, 1513
Bst2UI	CCWGG	6 cut(s)	128, 691, 762, 1685, 1739, 1796
Bst4CI	ACNGT	1 cut(s)	1780
Bst6I	CTCTTC	3 cut(s)	251, 342, 834
BstACI	GRCGYC	2 cut(s)	9, 1718
BstAUI	TGTACA	1 cut(s)	1768
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	6 cut(s)	64, 123, 133, 142, 385, 1416
BstDEI	CTNAG	6 cut(s)	14, 780, 887, 951, 1449, 1537
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	364, 474, 520, 867
BstFNI	CGCG	4 cut(s)	135, 144, 152, 269
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	3 cut(s)	48, 137, 146
BstKTI	GATC	9 cut(s)	214, 237, 646, 814, 1048, 1240, 1375, 1477, 1543
BstMAI	GTCTC	3 cut(s)	78, 359, 1025
BstMBI	GATC	9 cut(s)	211, 234, 643, 811, 1045, 1237, 1372, 1474, 1540
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 141, 143, 146, 1424
BstNI	CCWGG	6 cut(s)	128, 691, 762, 1685, 1739, 1796
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	9 cut(s)	126, 214, 689, 760, 1034, 1035, 1683, 1737, 1794
BstSFI	CTRYAG	2 cut(s)	1284, 1861
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	4 cut(s)	135, 144, 152, 269
BstV1I	GCAGC	4 cut(s)	55, 241, 1395, 1398
BstX2I	RGATCY	3 cut(s)	234, 1372, 1474
BstYI	RGATCY	3 cut(s)	234, 1372, 1474
Bsu36I	CCTNAGG	1 cut(s)	1449
BsuRI	GGCC	8 cut(s)	5, 59, 201, 219, 928, 1602, 1617, 1764
BtgI	CCRYGG	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	1920
BtsCI	GGATG	4 cut(s)	364, 474, 520, 867
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	2 cut(s)	188, 584
BtuMI	TCGCGA	1 cut(s)	269
BveI	ACCTGC	1 cut(s)	1220
Cac8I	GCNNGC	6 cut(s)	64, 123, 133, 142, 385, 1416
CaiI	CAGNNNCTG	2 cut(s)	190, 1235
CciI	TCATGA	2 cut(s)	1048, 1114
CfoI	GCGC	3 cut(s)	48, 137, 146
Cfr13I	GGNCC	4 cut(s)	200, 457, 1232, 1762
Cfr9I	CCCGGG	1 cut(s)	1035
Csp6I	GTAC	6 cut(s)	390, 507, 1249, 1437, 1769, 1847
CspCI	CAANNNNNGTGG	2 cut(s)	1050, 1085
CviAII	CATG	9 cut(s)	55, 791, 856, 945, 1049, 1066, 1115, 1142, 1766
CviQI	GTAC	6 cut(s)	390, 507, 1249, 1437, 1769, 1847
DdeI	CTNAG	6 cut(s)	14, 780, 887, 951, 1449, 1537
DpnI	GATC	9 cut(s)	213, 236, 645, 813, 1047, 1239, 1374, 1476, 1542
DpnII	GATC	9 cut(s)	211, 234, 643, 811, 1045, 1237, 1372, 1474, 1540
DrdI	GACNNNNNNGTC	1 cut(s)	589
DriI	GACNNNNNGTC	1 cut(s)	1717
DseDI	GACNNNNNNGTC	1 cut(s)	589
EaeI	YGGCCR	4 cut(s)	3, 57, 1600, 1615
Eam1104I	CTCTTC	3 cut(s)	251, 342, 834
Eam1105I	GACNNNNNGTC	1 cut(s)	1717
EarI	CTCTTC	3 cut(s)	251, 342, 834
EciI	GGCGGA	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	244
Eco130I	CCWWGG	4 cut(s)	54, 460, 1353, 1513
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	1025
Eco47I	GGWCC	2 cut(s)	457, 1232
Eco53kI	GAGCTC	1 cut(s)	244
Eco81I	CCTNAGG	1 cut(s)	1449
Eco88I	CYCGRG	2 cut(s)	116, 1035
EcoICRI	GAGCTC	1 cut(s)	244
EcoO109I	RGGNCCY	2 cut(s)	457, 1232
EcoRII	CCWGG	6 cut(s)	126, 689, 760, 1683, 1737, 1794
EcoT14I	CCWWGG	4 cut(s)	54, 460, 1353, 1513
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	4 cut(s)	54, 460, 1353, 1513
Esp3I	CGTCTC	1 cut(s)	359
FaeI	CATG	9 cut(s)	58, 794, 859, 948, 1052, 1069, 1118, 1145, 1769
FalI	AAGNNNNNCTT	4 cut(s)	376, 408, 1740, 1772
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	9 cut(s)	54, 790, 855, 944, 1048, 1065, 1114, 1141, 1765
FauI	CCCGC	2 cut(s)	71, 1423
FbaI	TGATCA	2 cut(s)	1045, 1237
FblI	GTMKAC	1 cut(s)	1790
Fnu4HI	GCNGC	8 cut(s)	44, 60, 138, 147, 150, 230, 1409, 1412
FokI	GGATG	4 cut(s)	371, 481, 527, 874
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	8 cut(s)	44, 60, 138, 147, 150, 230, 1409, 1412
FspBI	CTAG	2 cut(s)	825, 1107
GlaI	GCGC	3 cut(s)	47, 136, 145
GluI	GCNGC	8 cut(s)	44, 60, 138, 147, 150, 230, 1409, 1412
GsuI	CTGGAG	3 cut(s)	53, 423, 608
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	8 cut(s)	5, 59, 201, 219, 928, 1602, 1617, 1764
HapII	CCGG	2 cut(s)	216, 1036
HhaI	GCGC	3 cut(s)	48, 137, 146
Hin1I	GRCGYC	2 cut(s)	9, 1718
Hin1II	CATG	9 cut(s)	58, 794, 859, 948, 1052, 1069, 1118, 1145, 1769
Hin6I	GCGC	3 cut(s)	46, 135, 144
HinP1I	GCGC	3 cut(s)	46, 135, 144
HindIII	AAGCTT	1 cut(s)	1099
HpaII	CCGG	2 cut(s)	216, 1036
HphI	GGTGA	4 cut(s)	564, 870, 1285, 2005
Hpy166II	GTNNAC	5 cut(s)	439, 1690, 1791, 1847, 2013
Hpy188I	TCNGA	9 cut(s)	211, 445, 660, 754, 781, 802, 1270, 1372, 1540
Hpy188III	TCNNGA	7 cut(s)	250, 268, 953, 1049, 1115, 1235, 1448
Hpy8I	GTNNAC	5 cut(s)	439, 1690, 1791, 1847, 2013
Hpy99I	CGWCG	2 cut(s)	11, 110
HpyAV	CCTTC	5 cut(s)	97, 674, 918, 1502, 1512
HpyCH4III	ACNGT	1 cut(s)	1780
HpyCH4IV	ACGT	3 cut(s)	9, 1718, 1919
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 141, 143, 146, 1424
HpyF3I	CTNAG	6 cut(s)	14, 780, 887, 951, 1449, 1537
HpySE526I	ACGT	3 cut(s)	9, 1718, 1919
Hsp92I	GRCGYC	2 cut(s)	9, 1718
Hsp92II	CATG	9 cut(s)	58, 794, 859, 948, 1052, 1069, 1118, 1145, 1769
HspAI	GCGC	3 cut(s)	46, 135, 144
Ksp22I	TGATCA	2 cut(s)	1045, 1237
Kzo9I	GATC	9 cut(s)	211, 234, 643, 811, 1045, 1237, 1372, 1474, 1540
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	5 cut(s)	104, 304, 331, 686, 1387
Lsp1109I	GCAGC	4 cut(s)	55, 241, 1395, 1398
LweI	GCATC	4 cut(s)	349, 505, 719, 1025
MaeI	CTAG	2 cut(s)	825, 1107
MaeII	ACGT	3 cut(s)	9, 1718, 1919
MaeIII	GTNAC	3 cut(s)	570, 847, 1922
MalI	GATC	9 cut(s)	213, 236, 645, 813, 1047, 1239, 1374, 1476, 1542
MboI	GATC	9 cut(s)	211, 234, 643, 811, 1045, 1237, 1372, 1474, 1540
MflI	RGATCY	3 cut(s)	234, 1372, 1474
MhlI	GDGCHC	4 cut(s)	127, 246, 741, 952
MlsI	TGGCCA	1 cut(s)	1602
MluNI	TGGCCA	1 cut(s)	1602
MlyI	GAGTC	2 cut(s)	599, 740
MmeI	TCCRAC	1 cut(s)	126
Mox20I	TGGCCA	1 cut(s)	1602
MroXI	GAANNNNTTC	1 cut(s)	1779
MscI	TGGCCA	1 cut(s)	1602
MseI	TTAA	6 cut(s)	285, 701, 1193, 1298, 1305, 1965
MslI	CAYNNNNRTG	4 cut(s)	860, 943, 1026, 1644
Msp20I	TGGCCA	1 cut(s)	1602
MspI	CCGG	2 cut(s)	216, 1036
MspR9I	CCNGG	9 cut(s)	128, 216, 691, 762, 1036, 1037, 1685, 1739, 1796
Mva1269I	GAATGC	1 cut(s)	1945
MvaI	CCWGG	6 cut(s)	128, 691, 762, 1685, 1739, 1796
MvnI	CGCG	4 cut(s)	135, 144, 152, 269
MwoI	GCNNNNNNNGC	5 cut(s)	137, 141, 143, 146, 1424
NciI	CCSGG	3 cut(s)	216, 1036, 1037
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	9 cut(s)	211, 234, 643, 811, 1045, 1237, 1372, 1474, 1540
NlaIII	CATG	9 cut(s)	58, 794, 859, 948, 1052, 1069, 1118, 1145, 1769
NlaIV	GGNNCC	6 cut(s)	100, 202, 688, 759, 1267, 1763
NmeAIII	GCCGAG	2 cut(s)	75, 388
NmuCI	GTSAC	1 cut(s)	570
NruI	TCGCGA	1 cut(s)	269
NspI	RCATGY	1 cut(s)	859
NspV	TTCGAA	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	116
PagI	TCATGA	2 cut(s)	1048, 1114
PciSI	GCTCTTC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 114
PctI	GAATGC	1 cut(s)	1945
PdmI	GAANNNNTTC	1 cut(s)	1779
PfeI	GAWTC	9 cut(s)	154, 206, 431, 472, 784, 956, 974, 1203, 1276
PkrI	GCNGC	8 cut(s)	45, 61, 139, 148, 151, 231, 1410, 1413
PleI	GAGTC	2 cut(s)	598, 740
PpsI	GAGTC	2 cut(s)	598, 740
PpuMI	RGGWCCY	2 cut(s)	457, 1232
PshBI	ATTAAT	1 cut(s)	285
Psp124BI	GAGCTC	1 cut(s)	246
Psp5II	RGGWCCY	2 cut(s)	457, 1232
Psp6I	CCWGG	6 cut(s)	126, 689, 760, 1683, 1737, 1794
PspGI	CCWGG	6 cut(s)	126, 689, 760, 1683, 1737, 1794
PspN4I	GGNNCC	6 cut(s)	100, 202, 688, 759, 1267, 1763
PspPI	GGNCC	4 cut(s)	200, 457, 1232, 1762
PspPPI	RGGWCCY	2 cut(s)	457, 1232
PspXI	VCTCGAGB	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	1288
PstNI	CAGNNNCTG	2 cut(s)	190, 1235
PsuI	RGATCY	3 cut(s)	234, 1372, 1474
RruI	TCGCGA	1 cut(s)	269
RsaI	GTAC	6 cut(s)	391, 508, 1250, 1438, 1770, 1848
RsaNI	GTAC	6 cut(s)	390, 507, 1249, 1437, 1769, 1847
RseI	CAYNNNNRTG	4 cut(s)	860, 943, 1026, 1644
SacI	GAGCTC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	6 cut(s)	285, 701, 1193, 1298, 1305, 1965
SatI	GCNGC	8 cut(s)	44, 60, 138, 147, 150, 230, 1409, 1412
Sau3AI	GATC	9 cut(s)	211, 234, 643, 811, 1045, 1237, 1372, 1474, 1540
Sau96I	GGNCC	4 cut(s)	200, 457, 1232, 1762
SchI	GAGTC	2 cut(s)	599, 740
ScrFI	CCNGG	9 cut(s)	128, 216, 691, 762, 1036, 1037, 1685, 1739, 1796
SduI	GDGCHC	4 cut(s)	127, 246, 741, 952
SfaNI	GCATC	4 cut(s)	349, 505, 719, 1025
SfcI	CTRYAG	2 cut(s)	1284, 1861
Sfr274I	CTCGAG	1 cut(s)	116
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	2 cut(s)	457, 1232
SlaI	CTCGAG	1 cut(s)	116
SmaI	CCCGGG	1 cut(s)	1037
SmiMI	CAYNNNNRTG	4 cut(s)	860, 943, 1026, 1644
SmlI	CTYRAG	4 cut(s)	116, 239, 421, 1166
SmoI	CTYRAG	4 cut(s)	116, 239, 421, 1166
SsiI	CCGC	8 cut(s)	60, 64, 138, 147, 150, 329, 859, 1416
SspMI	CTAG	2 cut(s)	825, 1107
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	9 cut(s)	126, 214, 689, 760, 1034, 1035, 1683, 1737, 1794
StyI	CCWWGG	4 cut(s)	54, 460, 1353, 1513
TaaI	ACNGT	1 cut(s)	1780
TaiI	ACGT	3 cut(s)	12, 1721, 1922
TaqI	TCGA	6 cut(s)	117, 157, 222, 345, 475, 581
TatI	WGTACW	2 cut(s)	389, 1768
TauI	GCSGC	4 cut(s)	62, 140, 149, 152
TfiI	GAWTC	9 cut(s)	154, 206, 431, 472, 784, 956, 974, 1203, 1276
Tru1I	TTAA	6 cut(s)	285, 701, 1193, 1298, 1305, 1965
Tru9I	TTAA	6 cut(s)	285, 701, 1193, 1298, 1305, 1965
TscAI	CASTG	2 cut(s)	195, 591
TseFI	GTSAC	1 cut(s)	570
TseI	GCWGC	4 cut(s)	43, 229, 1408, 1411
Tsp45I	GTSAC	1 cut(s)	570
TspGWI	ACGGA	1 cut(s)	524
TspMI	CCCGGG	1 cut(s)	1035
TspRI	CASTG	2 cut(s)	195, 591
VpaK11BI	GGWCC	2 cut(s)	457, 1232
VspI	ATTAAT	1 cut(s)	285
XapI	RAATTY	3 cut(s)	370, 873, 1808
XceI	RCATGY	1 cut(s)	859
XhoI	CTCGAG	1 cut(s)	116
XmaI	CCCGGG	1 cut(s)	1035
XmiI	GTMKAC	1 cut(s)	1790
XmnI	GAANNNNTTC	1 cut(s)	1779
XspI	CTAG	2 cut(s)	825, 1107
ZraI	GACGTC	2 cut(s)	10, 1719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.