Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Reverse (-)

7284928 .. 7285794

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g09570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCCGACACTCTGAGCCCTAATCCGGCAACCCCGAAGCAGAGGCTCCCAATGGCCGCTCGTCTCCATTCTCCAACCAGCCCTTTCTTCCTCGGCTCCAACGAGGACCACCGCGAGCGTGCGCAGGCTCGCGCCGCCGCGATTCGAAGGAAGTCCGTTGCGCTCAATCTGCTGCCACAGCAGGGAGACCCCGATCCCTGCCTCGGAAAGGCCCATATCCTCGAGTTGCTCCAGAATTGCATCAAACTCGACAGTGAAAATAAAATTAATCAGAAAAATACATGGGAGCTGAATTTGATTGACCATTTAACGGATATTATTAAGGTTGGAGAGGAAAACGATGCAGAGACGAATTTTCAAAAGGCAAGCTGCACTCTTGAAGGTGGAGTCAAAATTTACTCGATGAGGGTGGATTCAGTACACTCCGAGGCATATAAGGTCCTTGGTGGGATGAACAGAGCAGTCCAAGAAGAAGAACAGGGTTGGGTTTGCTATCGGCTCTCACTGTGCCCTTTCGTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000793 GO:0000794 GO:0000796 GO:0000799 GO:0000819 GO:0001671 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0008047 GO:0008150 GO:0009987 GO:0010911 GO:0010912 GO:0016043 GO:0019899 GO:0022402 GO:0030234 GO:0030261 GO:0031974 GO:0031981 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044547 GO:0044815 GO:0048285 GO:0050790 GO:0051276 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071103 GO:0071840 GO:0072586 GO:0072587 GO:0098772 GO:0098813 GO:0140014 GO:1903047 GO:2000371 GO:2000373

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

175

Amino Acids

19.5

Weight (kDa)

6.21

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	123
AccBSI	CCGCTC	1 cut(s)	59
AccII	CGCG	3 cut(s)	114, 132, 140
AciI	CCGC	4 cut(s)	57, 112, 135, 138
AclWI	GGATC	1 cut(s)	188
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	3 cut(s)	292, 352, 393
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	5 cut(s)	25, 182, 203, 208, 310
AgsI	TTSAA	2 cut(s)	359, 380
AluBI	AGCT	2 cut(s)	289, 369
AluI	AGCT	2 cut(s)	289, 369
Alw26I	GTCTC	3 cut(s)	68, 180, 341
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	54, 210
ApeKI	GCWGC	2 cut(s)	172, 369
ApoI	RAATTY	3 cut(s)	292, 352, 393
AseI	ATTAAT	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	124, 134, 163
AspS9I	GGNCC	3 cut(s)	106, 211, 439
AsuII	TTCGAA	1 cut(s)	145
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	106, 439
BaeGI	GKGCMC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	159, 356
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BcoDI	GTCTC	3 cut(s)	68, 180, 341
BisI	GCNGC	5 cut(s)	57, 135, 138, 173, 370
BlsI	GCNGC	5 cut(s)	58, 136, 139, 174, 371
Bme18I	GGWCC	2 cut(s)	106, 439
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	106, 211, 439
BmiI	GGNNCC	2 cut(s)	47, 97
BmsI	GCATC	2 cut(s)	249, 331
BpmI	CTGGAG	1 cut(s)	215
Bpu14I	TTCGAA	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	4 cut(s)	91, 202, 426, 442
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 182, 203, 208, 310
BseDI	CCNNGG	4 cut(s)	91, 202, 426, 442
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	5 cut(s)	25, 182, 203, 208, 310
BseMII	CTCAG	1 cut(s)	5
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	2 cut(s)	159, 356
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	3 cut(s)	114, 132, 140
BshFI	GGCC	2 cut(s)	56, 212
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	5 cut(s)	25, 182, 203, 208, 310
BsmAI	GTCTC	3 cut(s)	68, 180, 341
BsmBI	CGTCTC	2 cut(s)	68, 341
BsnI	GGCC	2 cut(s)	56, 212
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	20, 512
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	4 cut(s)	57, 112, 135, 138
BspANI	GGCC	2 cut(s)	56, 212
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	3 cut(s)	114, 132, 140
BspLI	GGNNCC	2 cut(s)	47, 97
BspPI	GGATC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	180
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	4 cut(s)	91, 202, 426, 442
BssMI	GATC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	442
Bst4CI	ACNGT	2 cut(s)	254, 507
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	5 cut(s)	116, 120, 126, 130, 367
BstDEI	CTNAG	1 cut(s)	14
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	3 cut(s)	114, 132, 140
BstHHI	GCGC	3 cut(s)	124, 134, 163
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	3 cut(s)	68, 180, 341
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 169, 178
BstSLI	GKGCMC	1 cut(s)	512
BstUI	CGCG	3 cut(s)	114, 132, 140
BstV1I	GCAGC	2 cut(s)	159, 356
BsuRI	GGCC	2 cut(s)	56, 212
BtsCI	GGATG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	259, 503
Cac8I	GCNNGC	5 cut(s)	116, 120, 126, 130, 367
CfoI	GCGC	3 cut(s)	124, 134, 163
Cfr13I	GGNCC	3 cut(s)	106, 211, 439
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	1 cut(s)	282
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	106, 439
Eco88I	CYCGRG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	439
EcoT14I	CCWWGG	1 cut(s)	442
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	442
Esp3I	CGTCTC	2 cut(s)	68, 341
FaeI	CATG	1 cut(s)	285
FaiI	YATR	4 cut(s)	216, 283, 433, 435
FatI	CATG	1 cut(s)	281
Fnu4HI	GCNGC	5 cut(s)	57, 135, 138, 173, 370
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	57, 135, 138, 173, 370
FspI	TGCGCA	1 cut(s)	123
GlaI	GCGC	3 cut(s)	123, 133, 162
GluI	GCNGC	5 cut(s)	57, 135, 138, 173, 370
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	56, 212
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	3 cut(s)	124, 134, 163
Hin1II	CATG	1 cut(s)	285
Hin6I	GCGC	3 cut(s)	122, 132, 161
HinP1I	GCGC	3 cut(s)	122, 132, 161
HinfI	GANTC	3 cut(s)	142, 387, 413
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	4 cut(s)	15, 206, 273, 427
Hpy188III	TCNNGA	2 cut(s)	232, 377
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	2 cut(s)	141, 374
HpyCH4III	ACNGT	2 cut(s)	254, 507
HpyCH4V	TGCA	3 cut(s)	240, 344, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 169, 178
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	285
HspAI	GCGC	3 cut(s)	122, 132, 161
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	4 cut(s)	51, 101, 234, 286
LpnPI	CCDG	7 cut(s)	39, 91, 110, 167, 211, 245, 464
Lsp1109I	GCAGC	2 cut(s)	159, 356
LweI	GCATC	2 cut(s)	249, 331
MalI	GATC	1 cut(s)	195
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	1 cut(s)	193
MboII	GAAGA	3 cut(s)	79, 482, 485
MhlI	GDGCHC	2 cut(s)	20, 512
MluCI	AATT	5 cut(s)	235, 264, 292, 352, 393
MlyI	GAGTC	1 cut(s)	396
MmeI	TCCRAC	3 cut(s)	98, 123, 307
MnlI	CCTC	8 cut(s)	36, 97, 101, 212, 230, 325, 399, 421
MseI	TTAA	4 cut(s)	267, 308, 321, 523
MspI	CCGG	1 cut(s)	26
MvnI	CGCG	3 cut(s)	114, 132, 140
MwoI	GCNNNNNNNGC	3 cut(s)	134, 169, 178
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	2 cut(s)	47, 97
NmeAIII	GCCGAG	1 cut(s)	72
NsbI	TGCGCA	1 cut(s)	123
NspV	TTCGAA	1 cut(s)	145
PaeR7I	CTCGAG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	142, 413
PkrI	GCNGC	5 cut(s)	58, 136, 139, 174, 371
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PpuMI	RGGWCCY	1 cut(s)	439
PshBI	ATTAAT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	47, 97
PspPI	GGNCC	3 cut(s)	106, 211, 439
PspPPI	RGGWCCY	1 cut(s)	439
PspXI	VCTCGAGB	1 cut(s)	221
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SaqAI	TTAA	4 cut(s)	267, 308, 321, 523
SatI	GCNGC	5 cut(s)	57, 135, 138, 173, 370
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	3 cut(s)	106, 211, 439
SchI	GAGTC	1 cut(s)	396
SduI	GDGCHC	2 cut(s)	20, 512
SetI	ASST	5 cut(s)	291, 327, 371, 385, 441
SfaNI	GCATC	2 cut(s)	249, 331
Sfr274I	CTCGAG	1 cut(s)	221
SfuI	TTCGAA	1 cut(s)	145
SinI	GGWCC	2 cut(s)	106, 439
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	5 cut(s)	235, 264, 292, 352, 393
SsiI	CCGC	4 cut(s)	57, 112, 135, 138
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	2 cut(s)	254, 507
TaqI	TCGA	4 cut(s)	145, 222, 249, 401
TasI	AATT	5 cut(s)	235, 264, 292, 352, 393
TatI	WGTACW	1 cut(s)	418
TauI	GCSGC	3 cut(s)	59, 137, 140
TfiI	GAWTC	2 cut(s)	142, 413
Tru1I	TTAA	4 cut(s)	267, 308, 321, 523
Tru9I	TTAA	4 cut(s)	267, 308, 321, 523
TscAI	CASTG	2 cut(s)	259, 510
TseI	GCWGC	2 cut(s)	172, 369
TspDTI	ATGAA	1 cut(s)	467
TspGWI	ACGGA	2 cut(s)	145, 326
TspRI	CASTG	2 cut(s)	259, 510
VpaK11BI	GGWCC	2 cut(s)	106, 439
VspI	ATTAAT	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	3 cut(s)	292, 352, 393
XhoI	CTCGAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.