Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Reverse (-)

18404234 .. 18404479

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0189400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTTCCATTGATGCTGTCACAGCAAGTTACGTTGCTTTCCTTACCCTCGCTGAAGGAGGCAGCGCTCCTGACTTCGGAAAGATTGGTGGTGGCCTCGTTCACAGGTCCTCCCAACCTTTTCTGATTAGAAAACCTCTGACTCGCAAGCTGGTTGATCCTAAGGCAGAGACGAACGGGCTGGAAATTTATTCTTGTTCTCCTTTGAATCAATGCGTGATCGCAACAAGGTACTCCGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

81

Amino Acids

8.63

Weight (kDa)

7.79

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	1 cut(s)	233
AfeI	AGCGCT	1 cut(s)	67
AfiI	CCNNNNNNNGG	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	152
Aor51HI	AGCGCT	1 cut(s)	67
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	108
AxyI	CCTNAGG	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	164
BfoI	RGCGCY	1 cut(s)	69
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	4
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse21I	CCTNAGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	75
BshFI	GGCC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	157, 219
BspANI	GGCC	1 cut(s)	96
BspPI	GGATC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	157, 219
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	68
BstKTI	GATC	2 cut(s)	160, 222
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	2 cut(s)	157, 219
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	75
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	232
CviJI	RGCY	4 cut(s)	5, 96, 151, 181
CviKI_1	RGCY	4 cut(s)	5, 96, 151, 181
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	159, 221
DpnII	GATC	2 cut(s)	157, 219
Eco47I	GGWCC	1 cut(s)	108
Eco47III	AGCGCT	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	64
GlaI	GCGC	1 cut(s)	67
GluI	GCNGC	1 cut(s)	64
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	68
Hin6I	GCGC	1 cut(s)	66
HinP1I	GCGC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	142, 208
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	4 cut(s)	80, 126, 141, 238
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	33
HspAI	GCGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	157, 219
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	84, 91, 137, 167
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	1 cut(s)	4
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	19, 29
MalI	GATC	2 cut(s)	159, 221
MboI	GATC	2 cut(s)	157, 219
MluCI	AATT	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	6 cut(s)	53, 59, 107, 121, 147, 232
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	2 cut(s)	157, 219
NmuCI	GTSAC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	108
PspPI	GGNCC	1 cut(s)	108
PspPPI	RGGWCCY	1 cut(s)	108
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	157, 219
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	136
SetI	ASST	7 cut(s)	36, 110, 121, 139, 153, 233, 243
SfaNI	GCATC	1 cut(s)	4
SinI	GGWCC	1 cut(s)	108
Sse9I	AATT	1 cut(s)	186
TaiI	ACGT	1 cut(s)	36
TasI	AATT	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	63
Tsp45I	GTSAC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.