Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379437.1

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1128

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 725 bp

cagtgcacgctgaagcgtataaagttctgggtaggatcaatcgagctggtcttgaagatggacaagagactactatggaggatggcaatgtcagtgatgggaaggataagagtcagtgtaagaaagaggtggagcggaaggtatcaccactatcgacattggaatcgtcctttgaagctctaaacttgaagaagtttgatgttgcattcgtggtagatcccctgtatcatcagacatctgcacagtttgatgatggcggagccaagggtctgctattgaataatcttggagtatatggaaggtgccaggtgctttttgattcttcagaagttccagggaagtgcagatcatgtcaattgaaaaataaagccttggatttgatagatttatcttttgagaaagaatcaattcagcagatggtgactaacatgcttggaaaaaatgaaatttctcctactctaaatgatatactatgccatattgataaagataatcgacgatcagcacaagcttttaatataacccagaatccagatcttcctgcagatgcatttgatgataacgaagttgggttagacttttcatctgggagatatgacacggcgaccattgaacatgaacgtgatgatgatatatatgtcagtcatgaggatgtaaattttggaacatttcaaaatcatcaggaggtattttatatagctatgctgaattcatttagaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

240

Amino Acids

26.89

Weight (kDa)

4.72

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	135
AciI	CCGC	2 cut(s)	135, 257
AclWI	GGATC	2 cut(s)	43, 211
AcsI	RAATTY	3 cut(s)	446, 657, 708
AcuI	CTGAAG	2 cut(s)	32, 308
AgsI	TTSAA	7 cut(s)	55, 175, 189, 279, 360, 613, 673
AjnI	CCWGG	2 cut(s)	305, 333
AluBI	AGCT	4 cut(s)	46, 178, 511, 700
AluI	AGCT	4 cut(s)	46, 178, 511, 700
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	61
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	2 cut(s)	43, 211
ApaLI	GTGCAC	1 cut(s)	4
ApoI	RAATTY	3 cut(s)	446, 657, 708
Asp700I	GAANNNNTTC	1 cut(s)	407
AsuHPI	GGTGA	2 cut(s)	137, 432
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	5 cut(s)	52, 76, 91, 247, 411
BceAI	ACGGC	1 cut(s)	617
BciT130I	CCWGG	2 cut(s)	307, 335
BcoDI	GTCTC	1 cut(s)	61
BfmI	CTRYAG	1 cut(s)	542
BglII	AGATCT	1 cut(s)	534
Bme1390I	CCNGG	2 cut(s)	307, 335
BmiI	GGNNCC	2 cut(s)	261, 304
BmrFI	CCNGG	2 cut(s)	307, 335
BmsI	GCATC	1 cut(s)	537
BsaJI	CCNNGG	3 cut(s)	263, 334, 371
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	307, 335
BseDI	CCNNGG	3 cut(s)	263, 334, 371
BseGI	GGATG	2 cut(s)	87, 657
BseMI	GCAATG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	8
BsgI	GTGCAG	2 cut(s)	224, 363
BshNI	GGYRCC	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	5 cut(s)	35, 216, 346, 499, 534
BspACI	CCGC	2 cut(s)	135, 257
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	2 cut(s)	261, 304
BspMAI	CTGCAG	1 cut(s)	546
BspPI	GGATC	2 cut(s)	43, 211
BspT107I	GGYRCC	1 cut(s)	302
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	263, 334, 371
BssMI	GATC	5 cut(s)	35, 216, 346, 499, 534
BssT1I	CCWWGG	2 cut(s)	263, 371
Bst2UI	CCWGG	2 cut(s)	307, 335
Bst4CI	ACNGT	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	8
BstF5I	GGATG	2 cut(s)	87, 657
BstKTI	GATC	5 cut(s)	38, 219, 349, 502, 537
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	35, 216, 346, 499, 534
BstNI	CCWGG	2 cut(s)	307, 335
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	305, 333
BstSFI	CTRYAG	1 cut(s)	542
BstSLI	GKGCMC	1 cut(s)	8
BstX2I	RGATCY	2 cut(s)	216, 534
BstYI	RGATCY	2 cut(s)	216, 534
BtsCI	GGATG	2 cut(s)	87, 657
BtsIMutI	CAGTG	3 cut(s)	8, 99, 121
Cac8I	GCNNGC	1 cut(s)	8
CciI	TCATGA	1 cut(s)	645
CviAII	CATG	4 cut(s)	350, 429, 616, 646
CviJI	RGCY	6 cut(s)	46, 178, 262, 370, 511, 700
CviKI_1	RGCY	6 cut(s)	46, 178, 262, 370, 511, 700
DpnI	GATC	5 cut(s)	37, 218, 348, 501, 536
DpnII	GATC	5 cut(s)	35, 216, 346, 499, 534
EciI	GGCGGA	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	263, 371
Eco57I	CTGAAG	2 cut(s)	32, 308
EcoRI	GAATTC	1 cut(s)	708
EcoRII	CCWGG	2 cut(s)	305, 333
EcoT14I	CCWWGG	2 cut(s)	263, 371
EcoT22I	ATGCAT	1 cut(s)	552
ErhI	CCWWGG	2 cut(s)	263, 371
FaeI	CATG	4 cut(s)	353, 432, 619, 649
FatI	CATG	4 cut(s)	349, 428, 615, 645
FokI	GGATG	2 cut(s)	94, 664
Hin1II	CATG	4 cut(s)	353, 432, 619, 649
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	5 cut(s)	111, 163, 319, 403, 528
HphI	GGTGA	2 cut(s)	137, 432
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	233, 327
Hpy188III	TCNNGA	4 cut(s)	52, 532, 646, 682
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	3 cut(s)	96, 132, 293
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	6, 205, 241, 344, 544, 550
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	4 cut(s)	353, 432, 619, 649
Kzo9I	GATC	5 cut(s)	35, 216, 346, 499, 534
LmnI	GCTCC	2 cut(s)	132, 259
LweI	GCATC	1 cut(s)	537
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	5 cut(s)	37, 218, 348, 501, 536
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	5 cut(s)	35, 216, 346, 499, 534
MboII	GAAGA	4 cut(s)	67, 201, 314, 529
MfeI	CAATTG	1 cut(s)	355
MflI	RGATCY	2 cut(s)	216, 534
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	355, 407, 446, 657, 708
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	4 cut(s)	72, 120, 642, 678
Mph1103I	ATGCAT	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	407
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	2 cut(s)	620, 650
MspR9I	CCNGG	2 cut(s)	307, 335
MunI	CAATTG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	307, 335
NdeII	GATC	5 cut(s)	35, 216, 346, 499, 534
NlaIII	CATG	4 cut(s)	353, 432, 619, 649
NlaIV	GGNNCC	2 cut(s)	261, 304
NmuCI	GTSAC	1 cut(s)	420
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	1 cut(s)	432
PagI	TCATGA	1 cut(s)	645
PctI	GAATGC	1 cut(s)	205
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	4 cut(s)	163, 319, 403, 528
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	305, 333
PspGI	CCWGG	2 cut(s)	305, 333
PspN4I	GGNNCC	2 cut(s)	261, 304
PstI	CTGCAG	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	216, 534
RseI	CAYNNNNRTG	2 cut(s)	620, 650
SaqAI	TTAA	1 cut(s)	515
Sau3AI	GATC	5 cut(s)	35, 216, 346, 499, 534
SchI	GAGTC	1 cut(s)	120
ScrFI	CCNGG	2 cut(s)	307, 335
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	1 cut(s)	542
SmiMI	CAYNNNNRTG	2 cut(s)	620, 650
Sse9I	AATT	5 cut(s)	355, 407, 446, 657, 708
SsiI	CCGC	2 cut(s)	135, 257
StyD4I	CCNGG	2 cut(s)	305, 333
StyI	CCWWGG	2 cut(s)	263, 371
TaaI	ACNGT	1 cut(s)	245
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	3 cut(s)	42, 154, 495
TasI	AATT	5 cut(s)	355, 407, 446, 657, 708
TfiI	GAWTC	4 cut(s)	163, 319, 403, 528
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	2 cut(s)	99, 121
TseFI	GTSAC	1 cut(s)	420
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	4 cut(s)	458, 572, 632, 701
TspRI	CASTG	2 cut(s)	99, 121
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	446, 657, 708
XceI	RCATGY	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.