MD03G1195600.v1.1

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0002141
Physical Location & Seq
Forward (+)
26806512 .. 26807468
957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1195600.v1.1.491

Sequence Viewer

Length: 435 bp
ATGGCGGAGGCAATAAGTCCAAAACCGCCAGCTGCGCCGAGGAATACGGAGTCGACGGCGAACCGTCCCCATCCTCCCACCAGTCCACTCTTCGTTTTGGGATCCAACGACGACCAGCTCGAACGTGCACAGGCACGCGCGGCACGTGCCCCAGGGATTCGTCGCAAGGCGGCTACGGTTGCAGCTCAGTCTTCTCCGCCTGACGATTGTCTCAGTAGAGAGCAGATTATCAAACTCTTCCAAGAATGCATCAAACTTGCCAGAGAAAGTGTTGAAACCGAAAATGGCACGCAGGCTAATTTCCAAAAGGCAAGTTGTACATTGGAAGCCGGGTTGAAAATTTACTCGGTGAGGGTGGATTCATTGCACGCTGAGGCATATAAGGTCCTAAGTGGGATGAATCGATGTCTTGAAGATGAACAAGGTTGCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04111 map04111
Pfam Domains
Protein Families
Cnd2

Protein Analysis

145

Amino Acids

15.61

Weight (kDa)

6.72

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cnd2 PF05786 96 - 136 1.8e-16 Condensin complex subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 53
AccII CGCG 2 cut(s) 138, 140
AciI CCGC 5 cut(s) 5, 26, 140, 170, 197
AclWI GGATC 2 cut(s) 96, 109
AcsI RAATTY 1 cut(s) 339
AcvI CACGTG 1 cut(s) 146
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 3 cut(s) 275, 337, 413
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 3 cut(s) 32, 118, 185
AluI AGCT 3 cut(s) 32, 118, 185
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 215
Alw44I GTGCAC 1 cut(s) 126
AlwI GGATC 2 cut(s) 96, 109
ApaLI GTGCAC 1 cut(s) 126
ApeKI GCWGC 2 cut(s) 32, 182
ApoI RAATTY 1 cut(s) 339
AspLEI GCGC 2 cut(s) 37, 140
AspS9I GGNCC 1 cut(s) 385
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 361
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 2 cut(s) 130, 151
BamHI GGATCC 1 cut(s) 101
BbrPI CACGTG 1 cut(s) 146
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 19, 194
BccI CCATC 1 cut(s) 78
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 215
BisI GCNGC 4 cut(s) 33, 141, 171, 183
BlsI GCNGC 4 cut(s) 34, 142, 172, 184
Bme1390I CCNGG 2 cut(s) 153, 331
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 103
BmrFI CCNGG 2 cut(s) 153, 331
BmsI GCATC 1 cut(s) 258
BoxI GACNNNNGTC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 331
Bsa29I ATCGAT 1 cut(s) 403
BsaAI YACGTR 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 38, 151, 152
Bse1I ACTGG 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 362
BseBI CCWGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 403
BseDI CCNNGG 3 cut(s) 38, 151, 152
BseGI GGATG 2 cut(s) 70, 402
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 3 cut(s) 200, 226, 363
BseNI ACTGG 1 cut(s) 81
BseSI GKGCMC 2 cut(s) 130, 151
BseXI GCAGC 2 cut(s) 19, 194
Bsh1236I CGCG 2 cut(s) 138, 140
BshVI ATCGAT 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 51
BsmI GAATGC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 130, 151
Bsp1407I TGTACA 1 cut(s) 317
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 5 cut(s) 5, 26, 140, 170, 197
BspCNI CTCAG 3 cut(s) 199, 225, 364
BspDI ATCGAT 1 cut(s) 403
BspFNI CGCG 2 cut(s) 138, 140
BspLI GGNNCC 1 cut(s) 103
BspPI GGATC 2 cut(s) 96, 109
BsrDI GCAATG 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 317
BsrI ACTGG 1 cut(s) 81
BssECI CCNNGG 3 cut(s) 38, 151, 152
BssMI GATC 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 65, 178
Bst6I CTCTTC 2 cut(s) 95, 242
BstAUI TGTACA 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 146
BstC8I GCNNGC 5 cut(s) 30, 136, 290, 294, 369
BstDEI CTNAG 4 cut(s) 186, 212, 372, 389
BstF5I GGATG 2 cut(s) 70, 402
BstFNI CGCG 2 cut(s) 138, 140
BstHHI GCGC 2 cut(s) 37, 140
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 4 cut(s) 34, 140, 146, 179
BstNI CCWGG 1 cut(s) 153
BstPAI GACNNNNGTC 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 151, 329
BstSLI GKGCMC 2 cut(s) 130, 151
BstUI CGCG 2 cut(s) 138, 140
BstV1I GCAGC 2 cut(s) 19, 194
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 403
BsuTUI ATCGAT 1 cut(s) 403
BtsCI GGATG 2 cut(s) 70, 402
Cac8I GCNNGC 5 cut(s) 30, 136, 290, 294, 369
CfoI GCGC 2 cut(s) 37, 140
Cfr13I GGNCC 1 cut(s) 385
ClaI ATCGAT 1 cut(s) 403
Csp6I GTAC 1 cut(s) 318
CviJI RGCY 6 cut(s) 32, 118, 173, 185, 296, 329
CviKI_1 RGCY 6 cut(s) 32, 118, 173, 185, 296, 329
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 4 cut(s) 186, 212, 372, 389
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eam1104I CTCTTC 2 cut(s) 95, 242
EarI CTCTTC 2 cut(s) 95, 242
EciI GGCGGA 2 cut(s) 20, 186
Eco47I GGWCC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 251
FaiI YATR 2 cut(s) 379, 381
FaqI GGGAC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 4 cut(s) 33, 141, 171, 183
FokI GGATG 2 cut(s) 57, 409
Fsp4HI GCNGC 4 cut(s) 33, 141, 171, 183
GlaI GCGC 2 cut(s) 36, 139
GluI GCNGC 4 cut(s) 33, 141, 171, 183
HapII CCGG 1 cut(s) 330
HhaI GCGC 2 cut(s) 37, 140
Hin6I GCGC 2 cut(s) 35, 138
HinP1I GCGC 2 cut(s) 35, 138
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 4 cut(s) 50, 157, 359, 400
HpaII CCGG 1 cut(s) 330
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 3 cut(s) 54, 86, 128
Hpy188III TCNNGA 1 cut(s) 410
Hpy8I GTNNAC 3 cut(s) 54, 86, 128
Hpy99I CGWCG 3 cut(s) 58, 113, 165
HpyCH4III ACNGT 2 cut(s) 65, 178
HpyCH4IV ACGT 2 cut(s) 124, 145
HpyCH4V TGCA 4 cut(s) 128, 182, 249, 367
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 140, 146, 179
HpyF3I CTNAG 4 cut(s) 186, 212, 372, 389
HpySE526I ACGT 2 cut(s) 124, 145
HspAI GCGC 2 cut(s) 35, 138
Kzo9I GATC 1 cut(s) 101
Lsp1109I GCAGC 2 cut(s) 19, 194
LweI GCATC 1 cut(s) 258
MaeII ACGT 2 cut(s) 124, 145
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 4 cut(s) 82, 183, 229, 425
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 2 cut(s) 130, 151
MluCI AATT 2 cut(s) 298, 339
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 4 cut(s) 33, 84, 345, 367
Mph1103I ATGCAT 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 2 cut(s) 153, 331
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 153
MvnI CGCG 2 cut(s) 138, 140
MwoI GCNNNNNNNGC 4 cut(s) 34, 140, 146, 179
NciI CCSGG 1 cut(s) 331
NdeII GATC 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 103
NmeAIII GCCGAG 1 cut(s) 63
NsiI ATGCAT 1 cut(s) 251
PasI CCCWGGG 1 cut(s) 152
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 142
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 157, 359, 400
PkrI GCNGC 4 cut(s) 34, 142, 172, 184
PleI GAGTC 1 cut(s) 58
PmaCI CACGTG 1 cut(s) 146
PmlI CACGTG 1 cut(s) 146
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 385
PshAI GACNNNNGTC 1 cut(s) 207
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 151
PspCI CACGTG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 385
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SalI GTCGAC 1 cut(s) 52
SatI GCNGC 4 cut(s) 33, 141, 171, 183
Sau3AI GATC 1 cut(s) 101
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 153, 331
SduI GDGCHC 2 cut(s) 130, 151
SetI ASST 7 cut(s) 34, 120, 127, 148, 187, 387, 427
SfaNI GCATC 1 cut(s) 258
SinI GGWCC 1 cut(s) 385
Sse9I AATT 2 cut(s) 298, 339
SsiI CCGC 5 cut(s) 5, 26, 140, 170, 197
StyD4I CCNGG 2 cut(s) 151, 329
TaaI ACNGT 2 cut(s) 65, 178
TaiI ACGT 2 cut(s) 127, 148
TaqI TCGA 3 cut(s) 53, 120, 403
TasI AATT 2 cut(s) 298, 339
TatI WGTACW 1 cut(s) 317
TauI GCSGC 2 cut(s) 143, 173
TfiI GAWTC 3 cut(s) 157, 359, 400
TseI GCWGC 2 cut(s) 32, 182
TspDTI ATGAA 3 cut(s) 351, 413, 432
TspGWI ACGGA 1 cut(s) 62
VneI GTGCAC 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 339
XmiI GTMKAC 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.