Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040010.1

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 815

Gene Structure 815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040010.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 502 bp

aagcatggtggaggaggaacataactacgaaaatacaagtttccctagttatcatgaggaaaatgaaccaagttctttccatgaacctgattttgatgacagacttgagaaagttgatggctttttgtttttaagtcttggattcacttcaaaacaaaatgcttgggcaggtcctgatcattggaagtaccaaaaaactaaaggttccgaggtgaatcctcctgcagaaccaccattaacaattaagcgacaaagaagcaaacaacagcctgatattgatttcacaaaagccttggaagaagaaatgtcagatctatttgctccccccaaaaaccccaagtcgttgctgctgcctgcaaatagagcaagttgcagtacgaaacttcctgaggattgccactatcaaccagaggatcttatcaagttattccttctacccaatgtaaagtgccttggaaggagagggaggaagtcctcaggtaacaaatctttttttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000793 GO:0000794 GO:0000796 GO:0000799 GO:0000819 GO:0001671 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0008047 GO:0008150 GO:0009987 GO:0010911 GO:0010912 GO:0016043 GO:0019899 GO:0022402 GO:0030234 GO:0030261 GO:0031974 GO:0031981 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044547 GO:0044815 GO:0048285 GO:0050790 GO:0051276 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071103 GO:0071840 GO:0072586 GO:0072587 GO:0098772 GO:0098813 GO:0140014 GO:1903047 GO:2000371 GO:2000373

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

166

Amino Acids

19.0

Weight (kDa)

5.76

Isoelectric Point (pI)

64.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AclWI	GGATC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	189, 377
AgsI	TTSAA	1 cut(s)	151
AlwI	GGATC	1 cut(s)	421
AlwNI	CAGNNNCTG	1 cut(s)	174
ApeKI	GCWGC	2 cut(s)	347, 350
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	171
AxyI	CCTNAGG	2 cut(s)	388, 476
BbvI	GCAGC	2 cut(s)	334, 337
BccI	CCATC	1 cut(s)	111
BclI	TGATCA	1 cut(s)	176
BfaI	CTAG	1 cut(s)	46
BfmI	CTRYAG	1 cut(s)	223
BfuAI	ACCTGC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	311
BisI	GCNGC	2 cut(s)	348, 351
BlsI	GCNGC	2 cut(s)	349, 352
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	208, 292, 452
Bse21I	CCTNAGG	2 cut(s)	388, 476
BseDI	CCNNGG	3 cut(s)	208, 292, 452
BseMII	CTCAG	2 cut(s)	379, 490
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	2 cut(s)	334, 337
Bsp143I	GATC	3 cut(s)	176, 311, 413
BspCNI	CTCAG	2 cut(s)	380, 489
BspHI	TCATGA	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	227
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	421
BssECI	CCNNGG	3 cut(s)	208, 292, 452
BssMI	GATC	3 cut(s)	176, 311, 413
BssT1I	CCWWGG	2 cut(s)	292, 452
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	388, 476
BstKTI	GATC	3 cut(s)	179, 314, 416
BstMBI	GATC	3 cut(s)	176, 311, 413
BstMWI	GCNNNNNNNGC	1 cut(s)	363
BstSFI	CTRYAG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	334, 337
BstX2I	RGATCY	2 cut(s)	311, 413
BstYI	RGATCY	2 cut(s)	311, 413
Bsu36I	CCTNAGG	2 cut(s)	388, 476
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	174
CciI	TCATGA	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	2 cut(s)	188, 376
CviAII	CATG	3 cut(s)	5, 54, 81
CviJI	RGCY	3 cut(s)	121, 269, 291
CviKI_1	RGCY	3 cut(s)	121, 269, 291
CviQI	GTAC	2 cut(s)	188, 376
DdeI	CTNAG	2 cut(s)	388, 476
DpnI	GATC	3 cut(s)	178, 313, 415
DpnII	GATC	3 cut(s)	176, 311, 413
Eco130I	CCWWGG	2 cut(s)	292, 452
Eco47I	GGWCC	1 cut(s)	171
Eco81I	CCTNAGG	2 cut(s)	388, 476
EcoO109I	RGGNCCY	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	292, 452
ErhI	CCWWGG	2 cut(s)	292, 452
FaeI	CATG	3 cut(s)	8, 57, 84
FaiI	YATR	4 cut(s)	6, 22, 55, 82
FatI	CATG	3 cut(s)	4, 53, 80
FbaI	TGATCA	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	348, 351
Fsp4HI	GCNGC	2 cut(s)	348, 351
FspBI	CTAG	1 cut(s)	46
GluI	GCNGC	2 cut(s)	348, 351
Hin1II	CATG	3 cut(s)	8, 57, 84
HinfI	GANTC	2 cut(s)	142, 215
HphI	GGTGA	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	209, 311
Hpy188III	TCNNGA	3 cut(s)	54, 174, 387
HpyAV	CCTTC	2 cut(s)	441, 451
HpyCH4V	TGCA	3 cut(s)	225, 357, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	363
HpyF3I	CTNAG	2 cut(s)	388, 476
Hsp92II	CATG	3 cut(s)	8, 57, 84
Ksp22I	TGATCA	1 cut(s)	176
Kzo9I	GATC	3 cut(s)	176, 311, 413
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	9 cut(s)	100, 154, 187, 235, 283, 367, 400, 421, 463
Lsp1109I	GCAGC	2 cut(s)	334, 337
MaeI	CTAG	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	3 cut(s)	178, 313, 415
MboI	GATC	3 cut(s)	176, 311, 413
MboII	GAAGA	2 cut(s)	309, 312
MflI	RGATCY	2 cut(s)	311, 413
MluCI	AATT	1 cut(s)	241
MseI	TTAA	3 cut(s)	132, 237, 244
MwoI	GCNNNNNNNGC	1 cut(s)	363
NdeII	GATC	3 cut(s)	176, 311, 413
NlaIII	CATG	3 cut(s)	8, 57, 84
NlaIV	GGNNCC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	142, 215
PkrI	GCNGC	2 cut(s)	349, 352
PpuMI	RGGWCCY	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	206
PspPI	GGNCC	1 cut(s)	171
PspPPI	RGGWCCY	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	174
PsuI	RGATCY	2 cut(s)	311, 413
RsaI	GTAC	2 cut(s)	189, 377
RsaNI	GTAC	2 cut(s)	188, 376
SaqAI	TTAA	3 cut(s)	132, 237, 244
SatI	GCNGC	2 cut(s)	348, 351
Sau3AI	GATC	3 cut(s)	176, 311, 413
Sau96I	GGNCC	1 cut(s)	171
SetI	ASST	5 cut(s)	89, 173, 206, 214, 482
SfcI	CTRYAG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	241
SspMI	CTAG	1 cut(s)	46
StyI	CCWWGG	2 cut(s)	292, 452
TasI	AATT	1 cut(s)	241
TfiI	GAWTC	2 cut(s)	142, 215
Tru1I	TTAA	3 cut(s)	132, 237, 244
Tru9I	TTAA	3 cut(s)	132, 237, 244
TseI	GCWGC	2 cut(s)	347, 350
TspDTI	ATGAA	2 cut(s)	79, 97
VpaK11BI	GGWCC	1 cut(s)	171
XspI	CTAG	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.