Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Reverse (-)

8606432 .. 8608505

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1101300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTGACACTCTGAGCCCTAATCCGGCAACCCAGAAGCGGAGGCTCCCAATGGTCGCTCGTCTCCAGTCTCCAACCAGCCCCTTCTTCCTCGGCTCCAACGACGACAACCGCGAGCGTGCGCAGGCTCGCGCAGCACCCGCCGCCGCGATTCAAAGGAAGTCCGTTACACTCAATCTGCTGCCACAACGGGGAGACCCCAATCACGGCCTCGGAGAGGCGCAGATCCTCGAGCTGTTCCAGAATTGCATCAAACTCGCCAGTGAAAATAAAAATACATGGGAGCTGACTTTGATTGACCATTTAACTGACATTATCAGCGTTGAAGAGGAAAAGGATGCAGAGCCGAATTTTCAAAAGGCAAGCTGCACTCTTGAAGGTGGAGTCAAAATTTACTCAATGAGGGTGGATTCAGTACACACCGAGGCATATAAGGTCCTTGGTGGGATGAATAGAGTAGGTCAAGAATCCGAACAAGATACCAGAGTAGAGGATGCCAATGCTGACAATGGAAAAGATGTGGCTAGTTCAAGAATGAGACGCAGAAGAAGATATCTCCCTCATCAACGCTGGAATCATCTTTTGGAGGCTCTAAATTTTAAAAAAACTTCTGAACAATTTGATGAAGGTGGGGCCAAGGGTCTTTTAATGAATAATCTTGGAGTATATGGTGGATGCAGAGTGCTCTTTCACTCTTCGGAAGTACCAGGGAAGTGCATAGCACCTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000793 GO:0000794 GO:0000796 GO:0000799 GO:0000819 GO:0001671 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0008047 GO:0008150 GO:0009987 GO:0010911 GO:0010912 GO:0016043 GO:0019899 GO:0022402 GO:0030234 GO:0030261 GO:0031974 GO:0031981 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044547 GO:0044815 GO:0048285 GO:0050790 GO:0051276 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071103 GO:0071840 GO:0072586 GO:0072587 GO:0098772 GO:0098813 GO:0140014 GO:1903047 GO:2000371 GO:2000373

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

245

Amino Acids

27.19

Weight (kDa)

7.02

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cnd2	PF05786	27 - 236	4e-45	Condensin complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	123
AccII	CGCG	3 cut(s)	114, 132, 149
AciI	CCGC	5 cut(s)	40, 112, 141, 144, 147
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	349, 390, 595
AfaI	GTAC	2 cut(s)	417, 705
AfiI	CCNNNNNNNGG	5 cut(s)	25, 39, 191, 206, 217
AgsI	TTSAA	5 cut(s)	155, 326, 356, 377, 531
AjnI	CCWGG	1 cut(s)	706
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	3 cut(s)	235, 286, 366
AluI	AGCT	3 cut(s)	235, 286, 366
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	4 cut(s)	68, 75, 189, 532
AlwI	GGATC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	208, 633
ApeKI	GCWGC	3 cut(s)	134, 181, 366
ApoI	RAATTY	3 cut(s)	349, 390, 595
AspLEI	GCGC	3 cut(s)	124, 134, 223
AspS9I	GGNCC	2 cut(s)	436, 633
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	436
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	146, 168, 353
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	1 cut(s)	708
BcoDI	GTCTC	4 cut(s)	68, 75, 189, 532
BfaI	CTAG	1 cut(s)	525
BisI	GCNGC	5 cut(s)	135, 144, 147, 182, 367
BlsI	GCNGC	5 cut(s)	136, 145, 148, 183, 368
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	436, 633
BmiI	GGNNCC	3 cut(s)	47, 97, 634
BmrFI	CCNGG	1 cut(s)	708
BmsI	GCATC	4 cut(s)	258, 328, 484, 665
BpmI	CTGGAG	1 cut(s)	50
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	6 cut(s)	91, 211, 423, 439, 636, 707
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 39, 191, 206, 217
Bse1I	ACTGG	2 cut(s)	67, 261
BseBI	CCWGG	1 cut(s)	708
BseDI	CCNNGG	6 cut(s)	91, 211, 423, 439, 636, 707
BseGI	GGATG	4 cut(s)	343, 453, 499, 680
BseLI	CCNNNNNNNGG	5 cut(s)	25, 39, 191, 206, 217
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	2 cut(s)	67, 261
BseXI	GCAGC	3 cut(s)	146, 168, 353
BsgI	GTGCAG	1 cut(s)	352
Bsh1236I	CGCG	3 cut(s)	114, 132, 149
BshFI	GGCC	2 cut(s)	210, 635
BsiHKAI	GWGCWC	1 cut(s)	687
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	5 cut(s)	25, 39, 191, 206, 217
BsmAI	GTCTC	4 cut(s)	68, 75, 189, 532
BsmBI	CGTCTC	2 cut(s)	68, 532
BsnI	GGCC	2 cut(s)	210, 635
Bso31I	GGTCTC	1 cut(s)	189
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	20, 687
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	5 cut(s)	40, 112, 141, 144, 147
BspANI	GGCC	2 cut(s)	210, 635
BspCNI	CTCAG	1 cut(s)	6
BspFNI	CGCG	3 cut(s)	114, 132, 149
BspLI	GGNNCC	3 cut(s)	47, 97, 634
BspPI	GGATC	1 cut(s)	220
BspTNI	GGTCTC	1 cut(s)	189
BsrI	ACTGG	2 cut(s)	67, 261
BssECI	CCNNGG	6 cut(s)	91, 211, 423, 439, 636, 707
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	439, 636
Bst2UI	CCWGG	1 cut(s)	708
Bst6I	CTCTTC	2 cut(s)	321, 700
BstC8I	GCNNGC	5 cut(s)	116, 120, 126, 130, 364
BstDEI	CTNAG	1 cut(s)	14
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstF5I	GGATG	4 cut(s)	343, 453, 499, 680
BstFNI	CGCG	3 cut(s)	114, 132, 149
BstHHI	GCGC	3 cut(s)	124, 134, 223
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	4 cut(s)	68, 75, 189, 532
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 140, 143
BstNI	CCWGG	1 cut(s)	708
BstSCI	CCNGG	1 cut(s)	706
BstUI	CGCG	3 cut(s)	114, 132, 149
BstV1I	GCAGC	3 cut(s)	146, 168, 353
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	210, 635
BtsCI	GGATG	4 cut(s)	343, 453, 499, 680
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	5 cut(s)	116, 120, 126, 130, 364
CfoI	GCGC	3 cut(s)	124, 134, 223
Cfr13I	GGNCC	2 cut(s)	436, 633
CseI	GACGC	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	416, 704
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviAII	CATG	1 cut(s)	279
CviQI	GTAC	2 cut(s)	416, 704
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
DraI	TTTAAA	1 cut(s)	601
Eam1104I	CTCTTC	2 cut(s)	321, 700
EarI	CTCTTC	2 cut(s)	321, 700
Eco130I	CCWWGG	2 cut(s)	439, 636
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	189
Eco32I	GATATC	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	436
Eco88I	CYCGRG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	706
EcoRV	GATATC	1 cut(s)	554
EcoT14I	CCWWGG	2 cut(s)	439, 636
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	2 cut(s)	439, 636
Esp3I	CGTCTC	2 cut(s)	68, 532
FaeI	CATG	1 cut(s)	282
FaiI	YATR	6 cut(s)	280, 430, 432, 667, 669, 719
FatI	CATG	1 cut(s)	278
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	5 cut(s)	135, 144, 147, 182, 367
FokI	GGATG	4 cut(s)	350, 460, 506, 687
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	5 cut(s)	135, 144, 147, 182, 367
FspBI	CTAG	1 cut(s)	525
FspI	TGCGCA	1 cut(s)	123
GlaI	GCGC	3 cut(s)	123, 133, 222
GluI	GCNGC	5 cut(s)	135, 144, 147, 182, 367
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	210, 635
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	549
HhaI	GCGC	3 cut(s)	124, 134, 223
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	3 cut(s)	122, 132, 221
HinP1I	GCGC	3 cut(s)	122, 132, 221
HinfI	GANTC	5 cut(s)	151, 384, 410, 467, 574
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	5 cut(s)	15, 215, 472, 613, 700
Hpy188III	TCNNGA	4 cut(s)	241, 374, 464, 531
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	94, 371, 620
HpyCH4V	TGCA	5 cut(s)	249, 341, 369, 678, 717
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 140, 143
HpyF3I	CTNAG	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	3 cut(s)	122, 132, 221
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	3 cut(s)	51, 101, 283
Lsp1109I	GCAGC	3 cut(s)	146, 168, 353
LweI	GCATC	4 cut(s)	258, 328, 484, 665
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	5 cut(s)	79, 338, 558, 561, 687
MflI	RGATCY	1 cut(s)	225
MhlI	GDGCHC	2 cut(s)	20, 687
MluCI	AATT	6 cut(s)	244, 349, 390, 595, 617, 730
MlyI	GAGTC	1 cut(s)	393
MmeI	TCCRAC	2 cut(s)	98, 123
MseI	TTAA	3 cut(s)	305, 600, 647
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	708
MvnI	CGCG	3 cut(s)	114, 132, 149
MwoI	GCNNNNNNNGC	3 cut(s)	134, 140, 143
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	3 cut(s)	47, 97, 634
NmeAIII	GCCGAG	1 cut(s)	72
NsbI	TGCGCA	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 111
PfeI	GAWTC	4 cut(s)	151, 410, 467, 574
PkrI	GCNGC	5 cut(s)	136, 145, 148, 183, 368
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PpuMI	RGGWCCY	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	3 cut(s)	47, 97, 634
PspPI	GGNCC	2 cut(s)	436, 633
PspPPI	RGGWCCY	1 cut(s)	436
PspXI	VCTCGAGB	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	225
RsaI	GTAC	2 cut(s)	417, 705
RsaNI	GTAC	2 cut(s)	416, 704
SaqAI	TTAA	3 cut(s)	305, 600, 647
SatI	GCNGC	5 cut(s)	135, 144, 147, 182, 367
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	2 cut(s)	436, 633
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	2 cut(s)	20, 687
SetI	ASST	8 cut(s)	237, 288, 368, 382, 438, 463, 631, 727
SfaNI	GCATC	4 cut(s)	258, 328, 484, 665
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	6 cut(s)	244, 349, 390, 595, 617, 730
SsiI	CCGC	5 cut(s)	40, 112, 141, 144, 147
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	2 cut(s)	439, 636
TaqI	TCGA	1 cut(s)	231
TasI	AATT	6 cut(s)	244, 349, 390, 595, 617, 730
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	2 cut(s)	146, 149
TfiI	GAWTC	4 cut(s)	151, 410, 467, 574
Tru1I	TTAA	3 cut(s)	305, 600, 647
Tru9I	TTAA	3 cut(s)	305, 600, 647
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	3 cut(s)	134, 181, 366
TspDTI	ATGAA	3 cut(s)	464, 639, 665
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	436
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	3 cut(s)	349, 390, 595
XhoI	CTCGAG	1 cut(s)	230
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.