pycom03g14790

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
16091384 .. 16094314
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g14790.4

Sequence Viewer

Length: 1392 bp
ATGGCGGAGGCAATGAGTCCAAAACCGCCAGCTGCGCCGAGGAATACGGCTTCGGTGGCGAACCGTCCCCATTCTCCCACCACCAGTCCACTCTTCGTTTTGGGGTCCAACGACCACCAGCTCGAACGTGCAGAGGCACGGGCGGCACGTGCCGCTGGGATTCGTCGCAAGGCGGCTACAGTTGCAGCTCATTCTTCTCCGCCTGACGATTGTCTCAGTAGAGAGCAGATTATCAAACTCTTCCAAGAATGCATCAAACATGCCAGAGAAAATGTCCGTACATATTGTACATTGGAAGCCGGGTTGAAAATTTACTCGGTGAGGGTGGATTCATTGCACGCTGAGGCATATAAGGTCCTAAGTGGGATGAATCGATGTCTTGAAGATGAACAAGTTTTCGGATTTAGTAGCTTTGAGGTTGACCATGTCAGCAACAAGCAGGTCACATTGGTGGCTGATCCTCTATATCATCAGACATCTGCACAGTTGAATGAAGGTGGAGCCAAGGGTCTGGTACTGAATAACCTTGGAGTATATGGAGGATGCCAGCCATTGATTGGTTTTGGTCTCTATGTAGAATCTCTTGAGCAGATGGTGGTGGGCATATGCGGAAAGAATGAAATATGTCCTACTCCCATGGAGATATTTTACCAATTTGATGAAAATAATCATCGATCATCTCTAGATTTTAATATAAGCCAGAATGCAGATCTCAAAACGGATGCCTTTAACGGTGCAAATTTTGACACATCGAACATTTATCATAATGATAATATGGGTGATGATCATGAGAATATGAGTTTCGGAGATCCCTCATTTCATAATCATCACAAGGATAGTAACTCTCATACATCATATGAAGCTGATGTGGATGACAGATTTGAGAAACTTTCCACGTTTTCGTTTCAAGGTTTGGGGTTAGAGAAAAATTTATGGGCTGGTCCTTATCACTGGAAGTATTGGAGGCCTAAGGGTTCGGAGGAAGCTCCTGCGACTCGAAGCAGACCTGGTACTAAAAGATCAAAGAACACAAACCATAAGGAAGTTGAACTTAATTTCACAGCATCTCTTGACAACGAAATTCCAAATATCTTTGCTGTGCCAAAAAGTTCCAAGTCTTTACTTCCACCTGCAAGTAGAGTGCCAGTCAGTAACAGGCTACCAGATGACTGGCATTATCAACCTGAGAATCTTATCAAGTTGTTTCTTCTTCCCAGTGTTCTGGTAATGATTTCTCCATGTAGTCCTATAATATACAAATCTGTTGTTATCCATGATAAAAATATCAAGGAAAGATGGAGATTCTGTCGTGATCATGATCTCACTCCAAGTATAGGACGCCAATCTGGGGTAGATAATCCATTGGTTGAGTTTGTGATAGCTACAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

464

Amino Acids

51.74

Weight (kDa)

6.17

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1138
Acc36I ACCTGC 2 cut(s) 430, 1138
AccB7I CCANNNNNTGG 1 cut(s) 557
AciI CCGC 7 cut(s) 5, 26, 143, 153, 173, 200, 609
AclWI GGATC 2 cut(s) 452, 803
AcsI RAATTY 4 cut(s) 309, 739, 928, 1080
AcvI CACGTG 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 1339
AfaI GTAC 4 cut(s) 280, 289, 516, 1012
AfiI CCNNNNNNNGG 3 cut(s) 557, 1334, 1348
AgsI TTSAA 5 cut(s) 307, 383, 490, 908, 1049
AjnI CCWGG 1 cut(s) 1006
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 7 cut(s) 32, 121, 188, 411, 863, 986, 1382
AluI AGCT 7 cut(s) 32, 121, 188, 411, 863, 986, 1382
Alw26I GTCTC 2 cut(s) 218, 572
AlwI GGATC 2 cut(s) 452, 803
AoxI GGCC 1 cut(s) 965
ApeKI GCWGC 2 cut(s) 32, 185
ApoI RAATTY 4 cut(s) 309, 739, 928, 1080
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 3 cut(s) 105, 355, 941
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 331, 791
AvaII GGWCC 3 cut(s) 105, 355, 941
AxyI CCTNAGG 1 cut(s) 969
BbrPI CACGTG 1 cut(s) 149
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 19, 197
BccI CCATC 2 cut(s) 586, 1290
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 1008
BclI TGATCA 2 cut(s) 784, 1312
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 218, 572
BfaI CTAG 1 cut(s) 683
BfmI CTRYAG 2 cut(s) 177, 1383
BfuAI ACCTGC 2 cut(s) 430, 1138
BglII AGATCT 1 cut(s) 709
BisI GCNGC 5 cut(s) 33, 144, 153, 174, 186
BlsI GCNGC 5 cut(s) 34, 145, 154, 175, 187
Bme1390I CCNGG 2 cut(s) 301, 1008
Bme18I GGWCC 3 cut(s) 105, 355, 941
BmgT120I GGNCC 3 cut(s) 105, 355, 941
BmiI GGNNCC 2 cut(s) 106, 502
BmrFI CCNGG 2 cut(s) 301, 1008
BmrI ACTGGG 1 cut(s) 1209
BmsI GCATC 4 cut(s) 261, 533, 712, 1073
BmuI ACTGGG 1 cut(s) 1209
BoxI GACNNNNGTC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 605
BpuMI CCSGG 1 cut(s) 301
Bsa29I ATCGAT 2 cut(s) 373, 673
BsaAI YACGTR 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 1317
BsaHI GRCGYC 1 cut(s) 1339
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 4 cut(s) 38, 504, 526, 636
BsaXI ACNNNNNCTCC 2 cut(s) 1291, 1321
Bsc4I CCNNNNNNNGG 3 cut(s) 557, 1334, 1348
Bse1I ACTGG 5 cut(s) 84, 956, 1145, 1175, 1215
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 2 cut(s) 18, 332
Bse8I GATNNNNATC 1 cut(s) 1317
BseBI CCWGG 1 cut(s) 1008
BseCI ATCGAT 2 cut(s) 373, 673
BseDI CCNNGG 4 cut(s) 38, 504, 526, 636
BseGI GGATG 4 cut(s) 372, 548, 727, 877
BseJI GATNNNNATC 1 cut(s) 1317
BseLI CCNNNNNNNGG 3 cut(s) 557, 1334, 1348
BseMI GCAATG 2 cut(s) 18, 332
BseMII CTCAG 3 cut(s) 229, 333, 1176
BseNI ACTGG 5 cut(s) 84, 956, 1145, 1175, 1215
BseXI GCAGC 2 cut(s) 19, 197
BseYI CCCAGC 1 cut(s) 155
BsgI GTGCAG 2 cut(s) 150, 465
BshFI GGCC 1 cut(s) 967
BshVI ATCGAT 2 cut(s) 373, 673
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 51
BslI CCNNNNNNNGG 3 cut(s) 557, 1334, 1348
BsmAI GTCTC 2 cut(s) 218, 572
BsmFI GGGAC 1 cut(s) 51
BsmI GAATGC 2 cut(s) 254, 709
BsnI GGCC 1 cut(s) 967
Bso31I GGTCTC 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 287
Bsp143I GATC 8 cut(s) 457, 674, 709, 784, 808, 1019, 1312, 1318
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 7 cut(s) 5, 26, 143, 153, 173, 200, 609
BspANI GGCC 1 cut(s) 967
BspCNI CTCAG 3 cut(s) 228, 334, 1177
BspDI ATCGAT 2 cut(s) 373, 673
BspHI TCATGA 2 cut(s) 787, 1315
BspLI GGNNCC 2 cut(s) 106, 502
BspMI ACCTGC 2 cut(s) 430, 1138
BspPI GGATC 2 cut(s) 452, 803
BspTNI GGTCTC 1 cut(s) 572
BsrDI GCAATG 2 cut(s) 18, 332
BsrGI TGTACA 1 cut(s) 287
BsrI ACTGG 5 cut(s) 84, 956, 1145, 1175, 1215
BssECI CCNNGG 4 cut(s) 38, 504, 526, 636
BssMI GATC 8 cut(s) 457, 674, 709, 784, 808, 1019, 1312, 1318
BssNI GRCGYC 1 cut(s) 1339
BssT1I CCWWGG 3 cut(s) 504, 526, 636
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 5 cut(s) 65, 181, 486, 734, 1387
Bst6I CTCTTC 2 cut(s) 98, 245
BstACI GRCGYC 1 cut(s) 1339
BstAUI TGTACA 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 149
BstC8I GCNNGC 3 cut(s) 30, 339, 548
BstDEI CTNAG 5 cut(s) 215, 342, 359, 969, 1185
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 4 cut(s) 372, 548, 727, 877
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 8 cut(s) 460, 677, 712, 787, 811, 1022, 1315, 1321
BstMAI GTCTC 2 cut(s) 218, 572
BstMBI GATC 8 cut(s) 457, 674, 709, 784, 808, 1019, 1312, 1318
BstMWI GCNNNNNNNGC 6 cut(s) 34, 56, 143, 149, 152, 182
BstNI CCWGG 1 cut(s) 1008
BstNSI RCATGY 1 cut(s) 263
BstPAI GACNNNNGTC 1 cut(s) 210
BstSCI CCNGG 2 cut(s) 299, 1006
BstSFI CTRYAG 2 cut(s) 177, 1383
BstV1I GCAGC 2 cut(s) 19, 197
BstX2I RGATCY 2 cut(s) 709, 808
BstXI CCANNNNNNTGG 3 cut(s) 511, 1170, 1222
BstYI RGATCY 2 cut(s) 709, 808
Bsu15I ATCGAT 2 cut(s) 373, 673
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 1 cut(s) 967
BsuTUI ATCGAT 2 cut(s) 373, 673
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 4 cut(s) 372, 548, 727, 877
BtsIMutI CAGTG 2 cut(s) 949, 1222
BveI ACCTGC 2 cut(s) 430, 1138
Cac8I GCNNGC 3 cut(s) 30, 339, 548
CciI TCATGA 2 cut(s) 787, 1315
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 3 cut(s) 105, 355, 941
ClaI ATCGAT 2 cut(s) 373, 673
CseI GACGC 1 cut(s) 1347
CsiI ACCWGGT 1 cut(s) 1006
Csp6I GTAC 4 cut(s) 279, 288, 515, 1011
CviAII CATG 7 cut(s) 260, 425, 637, 788, 1239, 1274, 1316
CviQI GTAC 4 cut(s) 279, 288, 515, 1011
DdeI CTNAG 5 cut(s) 215, 342, 359, 969, 1185
DpnI GATC 8 cut(s) 459, 676, 711, 786, 810, 1021, 1314, 1320
DpnII GATC 8 cut(s) 457, 674, 709, 784, 808, 1019, 1312, 1318
Eam1104I CTCTTC 2 cut(s) 98, 245
EarI CTCTTC 2 cut(s) 98, 245
EciI GGCGGA 2 cut(s) 20, 189
Eco130I CCWWGG 3 cut(s) 504, 526, 636
Eco147I AGGCCT 1 cut(s) 967
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 3 cut(s) 105, 355, 941
Eco72I CACGTG 1 cut(s) 149
Eco81I CCTNAGG 1 cut(s) 969
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 3 cut(s) 504, 526, 636
EcoT22I ATGCAT 1 cut(s) 254
ErhI CCWWGG 3 cut(s) 504, 526, 636
FaeI CATG 7 cut(s) 263, 428, 640, 791, 1242, 1277, 1319
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 1 cut(s) 51
FatI CATG 7 cut(s) 259, 424, 636, 787, 1238, 1273, 1315
FauNDI CATATG 2 cut(s) 605, 856
FbaI TGATCA 2 cut(s) 784, 1312
Fnu4HI GCNGC 5 cut(s) 33, 144, 153, 174, 186
FokI GGATG 4 cut(s) 379, 555, 734, 884
Fsp4HI GCNGC 5 cut(s) 33, 144, 153, 174, 186
FspBI CTAG 1 cut(s) 683
GlaI GCGC 1 cut(s) 36
GluI GCNGC 5 cut(s) 33, 144, 153, 174, 186
GsaI CCCAGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 967
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 1347
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 1339
Hin1II CATG 7 cut(s) 263, 428, 640, 791, 1242, 1277, 1319
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 8 cut(s) 16, 160, 329, 370, 578, 994, 1189, 1302
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 331, 791
Hpy166II GTNNAC 2 cut(s) 89, 421
Hpy188I TCNGA 4 cut(s) 401, 474, 806, 979
Hpy188III TCNNGA 7 cut(s) 380, 584, 683, 788, 1070, 1310, 1316
Hpy8I GTNNAC 2 cut(s) 89, 421
Hpy99I CGWCG 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 488
HpyCH4III ACNGT 5 cut(s) 65, 181, 486, 734, 1387
HpyCH4IV ACGT 3 cut(s) 127, 148, 896
HpyCH4V TGCA 8 cut(s) 131, 185, 252, 337, 482, 707, 737, 1133
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 56, 143, 149, 152, 182
HpyF3I CTNAG 5 cut(s) 215, 342, 359, 969, 1185
HpySE526I ACGT 3 cut(s) 127, 148, 896
Hsp92I GRCGYC 1 cut(s) 1339
Hsp92II CATG 7 cut(s) 263, 428, 640, 791, 1242, 1277, 1319
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 2 cut(s) 784, 1312
Kzo9I GATC 8 cut(s) 457, 674, 709, 784, 808, 1019, 1312, 1318
LmnI GCTCC 2 cut(s) 500, 991
Lsp1109I GCAGC 2 cut(s) 19, 197
LweI GCATC 4 cut(s) 261, 533, 712, 1073
MabI ACCWGGT 1 cut(s) 1006
MaeI CTAG 1 cut(s) 683
MaeII ACGT 3 cut(s) 127, 148, 896
MaeIII GTNAC 3 cut(s) 442, 839, 1151
MalI GATC 8 cut(s) 459, 676, 711, 786, 810, 1021, 1314, 1320
MboI GATC 8 cut(s) 457, 674, 709, 784, 808, 1019, 1312, 1318
MboII GAAGA 6 cut(s) 85, 186, 232, 395, 1199, 1202
MflI RGATCY 2 cut(s) 709, 808
MluCI AATT 6 cut(s) 309, 653, 739, 928, 1054, 1080
MlyI GAGTC 2 cut(s) 25, 988
MmeI TCCRAC 1 cut(s) 132
Mph1103I ATGCAT 1 cut(s) 254
MseI TTAA 3 cut(s) 690, 729, 1053
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 2 cut(s) 32, 155
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 2 cut(s) 301, 1008
Mva1269I GAATGC 2 cut(s) 254, 709
MvaI CCWGG 1 cut(s) 1008
MwoI GCNNNNNNNGC 6 cut(s) 34, 56, 143, 149, 152, 182
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 1 cut(s) 636
NdeI CATATG 2 cut(s) 605, 856
NdeII GATC 8 cut(s) 457, 674, 709, 784, 808, 1019, 1312, 1318
NlaIII CATG 7 cut(s) 263, 428, 640, 791, 1242, 1277, 1319
NlaIV GGNNCC 2 cut(s) 106, 502
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 254
NspI RCATGY 1 cut(s) 263
OliI CACNNNNGTG 1 cut(s) 449
PagI TCATGA 2 cut(s) 787, 1315
PaqCI CACCTGC 1 cut(s) 1138
PceI AGGCCT 1 cut(s) 967
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PctI GAATGC 2 cut(s) 254, 709
PfeI GAWTC 6 cut(s) 160, 329, 370, 578, 1189, 1302
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 557
PkrI GCNGC 5 cut(s) 34, 145, 154, 175, 187
PleI GAGTC 2 cut(s) 24, 988
PmaCI CACGTG 1 cut(s) 149
PmlI CACGTG 1 cut(s) 149
PpsI GAGTC 2 cut(s) 24, 988
Ppu21I YACGTR 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 355
PshAI GACNNNNGTC 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 1006
PspCI CACGTG 1 cut(s) 149
PspFI CCCAGC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 2 cut(s) 106, 502
PspPI GGNCC 3 cut(s) 105, 355, 941
PspPPI RGGWCCY 1 cut(s) 355
PsuI RGATCY 2 cut(s) 709, 808
PsyI GACNNNGTC 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 4 cut(s) 280, 289, 516, 1012
RsaNI GTAC 4 cut(s) 279, 288, 515, 1011
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 3 cut(s) 690, 729, 1053
SatI GCNGC 5 cut(s) 33, 144, 153, 174, 186
Sau3AI GATC 8 cut(s) 457, 674, 709, 784, 808, 1019, 1312, 1318
Sau96I GGNCC 3 cut(s) 105, 355, 941
SchI GAGTC 2 cut(s) 25, 988
ScrFI CCNGG 2 cut(s) 301, 1008
SexAI ACCWGGT 1 cut(s) 1006
SfaNI GCATC 4 cut(s) 261, 533, 712, 1073
SfcI CTRYAG 2 cut(s) 177, 1383
SinI GGWCC 3 cut(s) 105, 355, 941
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 6 cut(s) 309, 653, 739, 928, 1054, 1080
SseBI AGGCCT 1 cut(s) 967
SsiI CCGC 7 cut(s) 5, 26, 143, 153, 173, 200, 609
SspMI CTAG 1 cut(s) 683
StuI AGGCCT 1 cut(s) 967
StyD4I CCNGG 2 cut(s) 299, 1006
StyI CCWWGG 3 cut(s) 504, 526, 636
TaaI ACNGT 5 cut(s) 65, 181, 486, 734, 1387
TaiI ACGT 3 cut(s) 130, 151, 899
TaqI TCGA 5 cut(s) 123, 373, 673, 752, 997
TasI AATT 6 cut(s) 309, 653, 739, 928, 1054, 1080
TatI WGTACW 1 cut(s) 287
TauI GCSGC 3 cut(s) 146, 155, 176
TfiI GAWTC 6 cut(s) 160, 329, 370, 578, 1189, 1302
Tru1I TTAA 3 cut(s) 690, 729, 1053
Tru9I TTAA 3 cut(s) 690, 729, 1053
TscAI CASTG 2 cut(s) 956, 1222
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 32, 185
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 8 cut(s) 321, 383, 402, 507, 633, 675, 809, 873
TspGWI ACGGA 2 cut(s) 266, 734
TspRI CASTG 2 cut(s) 956, 1222
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 105, 355, 941
XapI RAATTY 4 cut(s) 309, 739, 928, 1080
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 1 cut(s) 263
XcmI CCANNNNNNNNNTGG 1 cut(s) 554
XspI CTAG 1 cut(s) 683
Zsp2I ATGCAT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.