Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030339.1

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1444

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 715 bp

atgaggtttatattacatacagatatactattcatagaaccggaaaatgaactaagttctttccatgaacctgattttgatgacagacttgagaaagttgatggctttttgtttttaagtcttggattcacttcaaaacaaaatgcttgggcaggtcctgatcattggaagtaccaaaaaactaaaggttccgaggtgaatcctcctgcagaaccaccattaacaattaagcgacaaagaagcaaacaacagcctgatattgatttcacaaaagccttggaagaagaaatgtcagatctatttgctccccccaaaaaccccaagtcgttgctgctgcctgcaaatagagcaagttgcagtacgaaacttcctgaggattgccactatcaaccagaggatcttatcaagttattccttctacccaatgtaaagtgccttggaaggagagggaagaagtcctcagatcaatcaaggcaacaatatgatgattgtgggcaatcttcattttgtgatgatggtggtggccagtatgatgacggccaatatgatgagggaaatgtccatagtgatgtagaggactttagcacacttgtttctcaacctcgccaggtaaacaaaattgaagtccagtatgacaagacgtccaaacaagttgatgtccaggctttgaaagaaaccctttggggccatgtacaagaaactgttcaaaagtcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000793 GO:0000794 GO:0000796 GO:0000799 GO:0000819 GO:0001671 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006323 GO:0006996 GO:0007049 GO:0007059 GO:0007076 GO:0008047 GO:0008150 GO:0009987 GO:0010911 GO:0010912 GO:0016043 GO:0019899 GO:0022402 GO:0030234 GO:0030261 GO:0031974 GO:0031981 GO:0032781 GO:0032991 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0044547 GO:0044815 GO:0048285 GO:0050790 GO:0051276 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0070013 GO:0071103 GO:0071840 GO:0072586 GO:0072587 GO:0098772 GO:0098813 GO:0140014 GO:1903047 GO:2000371 GO:2000373

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

238

Amino Acids

27.17

Weight (kDa)

5.04

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	2 cut(s)	523, 538
AcyI	GRCGYC	1 cut(s)	641
AfaI	GTAC	3 cut(s)	173, 361, 693
AgsI	TTSAA	4 cut(s)	135, 623, 670, 707
AhdI	GACNNNNNGTC	1 cut(s)	640
AjnI	CCWGG	2 cut(s)	606, 660
AlwI	GGATC	1 cut(s)	405
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	3 cut(s)	523, 538, 685
ApeKI	GCWGC	2 cut(s)	331, 334
ArsI	GACNNNNNNTTYG	2 cut(s)	609, 641
Asp700I	GAANNNNTTC	1 cut(s)	702
AspS9I	GGNCC	2 cut(s)	155, 685
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	372
BalI	TGGCCA	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	318, 321
BccI	CCATC	2 cut(s)	95, 509
BceAI	ACGGC	1 cut(s)	553
BciT130I	CCWGG	2 cut(s)	608, 662
BclI	TGATCA	1 cut(s)	160
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	143
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	2 cut(s)	332, 335
BlsI	GCNGC	2 cut(s)	333, 336
Bme1390I	CCNGG	2 cut(s)	608, 662
Bme18I	GGWCC	1 cut(s)	155
BmeRI	GACNNNNNGTC	1 cut(s)	640
BmgT120I	GGNCC	2 cut(s)	155, 685
BmiI	GGNNCC	2 cut(s)	190, 686
BmrFI	CCNGG	2 cut(s)	608, 662
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	192, 276, 436
BsaWI	WCCGGW	1 cut(s)	40
Bse1I	ACTGG	2 cut(s)	526, 628
Bse21I	CCTNAGG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	608, 662
BseDI	CCNNGG	3 cut(s)	192, 276, 436
BseMII	CTCAG	2 cut(s)	363, 474
BseNI	ACTGG	2 cut(s)	526, 628
BseXI	GCAGC	2 cut(s)	318, 321
BshFI	GGCC	3 cut(s)	525, 540, 687
BsiSI	CCGG	1 cut(s)	41
BsnI	GGCC	3 cut(s)	525, 540, 687
Bsp1407I	TGTACA	1 cut(s)	691
Bsp143I	GATC	4 cut(s)	160, 295, 397, 463
BspANI	GGCC	3 cut(s)	525, 540, 687
BspCNI	CTCAG	2 cut(s)	364, 473
BspLI	GGNNCC	2 cut(s)	190, 686
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	526, 628
BssECI	CCNNGG	3 cut(s)	192, 276, 436
BssMI	GATC	4 cut(s)	160, 295, 397, 463
BssNI	GRCGYC	1 cut(s)	641
BssT1I	CCWWGG	2 cut(s)	276, 436
Bst2UI	CCWGG	2 cut(s)	608, 662
Bst4CI	ACNGT	1 cut(s)	703
BstACI	GRCGYC	1 cut(s)	641
BstAUI	TGTACA	1 cut(s)	691
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	3 cut(s)	53, 372, 460
BstKTI	GATC	4 cut(s)	163, 298, 400, 466
BstMBI	GATC	4 cut(s)	160, 295, 397, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	608, 662
BstSCI	CCNGG	2 cut(s)	606, 660
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	318, 321
BstX2I	RGATCY	2 cut(s)	295, 397
BstYI	RGATCY	2 cut(s)	295, 397
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	525, 540, 687
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	155, 685
Csp6I	GTAC	3 cut(s)	172, 360, 692
CviAII	CATG	2 cut(s)	65, 689
CviJI	RGCY	7 cut(s)	105, 253, 275, 525, 540, 665, 687
CviKI_1	RGCY	7 cut(s)	105, 253, 275, 525, 540, 665, 687
CviQI	GTAC	3 cut(s)	172, 360, 692
DdeI	CTNAG	3 cut(s)	53, 372, 460
DpnI	GATC	4 cut(s)	162, 297, 399, 465
DpnII	GATC	4 cut(s)	160, 295, 397, 463
DriI	GACNNNNNGTC	1 cut(s)	640
EaeI	YGGCCR	2 cut(s)	523, 538
Eam1105I	GACNNNNNGTC	1 cut(s)	640
Eco130I	CCWWGG	2 cut(s)	276, 436
Eco47I	GGWCC	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	606, 660
EcoT14I	CCWWGG	2 cut(s)	276, 436
ErhI	CCWWGG	2 cut(s)	276, 436
FaeI	CATG	2 cut(s)	68, 692
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FatI	CATG	2 cut(s)	64, 688
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	332, 335
Fsp4HI	GCNGC	2 cut(s)	332, 335
GluI	GCNGC	2 cut(s)	332, 335
HaeIII	GGCC	3 cut(s)	525, 540, 687
HapII	CCGG	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	641
Hin1II	CATG	2 cut(s)	68, 692
HinfI	GANTC	2 cut(s)	126, 199
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	3 cut(s)	193, 295, 463
Hpy188III	TCNNGA	2 cut(s)	158, 371
Hpy8I	GTNNAC	1 cut(s)	613
HpyAV	CCTTC	2 cut(s)	425, 435
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	3 cut(s)	209, 341, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	3 cut(s)	53, 372, 460
HpySE526I	ACGT	1 cut(s)	641
Hsp92I	GRCGYC	1 cut(s)	641
Hsp92II	CATG	2 cut(s)	68, 692
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	160, 295, 397, 463
LmnI	GCTCC	1 cut(s)	310
Lsp1109I	GCAGC	2 cut(s)	318, 321
MaeII	ACGT	1 cut(s)	641
MalI	GATC	4 cut(s)	162, 297, 399, 465
MboI	GATC	4 cut(s)	160, 295, 397, 463
MboII	GAAGA	4 cut(s)	293, 296, 463, 492
MflI	RGATCY	2 cut(s)	295, 397
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	2 cut(s)	225, 618
MluNI	TGGCCA	1 cut(s)	525
MnlI	CCTC	9 cut(s)	187, 213, 367, 388, 440, 469, 544, 568, 612
Mox20I	TGGCCA	1 cut(s)	525
MroXI	GAANNNNTTC	1 cut(s)	702
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	3 cut(s)	116, 221, 228
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	525
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	608, 662
MvaI	CCWGG	2 cut(s)	608, 662
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	4 cut(s)	160, 295, 397, 463
NlaIII	CATG	2 cut(s)	68, 692
NlaIV	GGNNCC	2 cut(s)	190, 686
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	2 cut(s)	126, 199
PkrI	GCNGC	2 cut(s)	333, 336
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	606, 660
PspGI	CCWGG	2 cut(s)	606, 660
PspN4I	GGNNCC	2 cut(s)	190, 686
PspPI	GGNCC	2 cut(s)	155, 685
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	295, 397
RsaI	GTAC	3 cut(s)	173, 361, 693
RsaNI	GTAC	3 cut(s)	172, 360, 692
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	3 cut(s)	116, 221, 228
SatI	GCNGC	2 cut(s)	332, 335
Sau3AI	GATC	4 cut(s)	160, 295, 397, 463
Sau96I	GGNCC	2 cut(s)	155, 685
ScrFI	CCNGG	2 cut(s)	608, 662
SetI	ASST	8 cut(s)	8, 73, 157, 190, 198, 604, 612, 644
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	225, 618
StyD4I	CCNGG	2 cut(s)	606, 660
StyI	CCWWGG	2 cut(s)	276, 436
TaaI	ACNGT	1 cut(s)	703
TaiI	ACGT	1 cut(s)	644
TasI	AATT	2 cut(s)	225, 618
TatI	WGTACW	1 cut(s)	691
TfiI	GAWTC	2 cut(s)	126, 199
Tru1I	TTAA	3 cut(s)	116, 221, 228
Tru9I	TTAA	3 cut(s)	116, 221, 228
TseI	GCWGC	2 cut(s)	331, 334
TspDTI	ATGAA	4 cut(s)	22, 63, 81, 492
VpaK11BI	GGWCC	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	702
ZraI	GACGTC	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.