Rmu_ssc0000284.1_g000007

Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000284.1
Physical Location & Seq
Forward (+)
24968 .. 26940
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000284.1_g000007.1.cds

Sequence Viewer

Length: 1076 bp
atggccgcccgcctccagtctcccaccagccccttcttcctcggctccaacgacgaccacctcgagcgtgcccaggcacgcgccgcacgcgcagccgccattcgaagaaaatccctcgccctcaatcgtcagccactgcttgacggccccgattccgatcccggcctcgataagcagcagatccttgagctcttccagaattgtataaaactcgcgagtgaaaataaaattaatcaaaagaatacttgggagctgaacttgattgaccacttggcggagcttgtcaaggtcgaagaggaaaaggatgccgagacgaattttcaaaaggcaagttgtactttggaagctggagtgaagatttactccttgagagttgattcagttcactccgaggcatacaaggtccttggtgggatgaatcgagctggacaagacaatgaacaagatactggtacggaggatgccaatgctgacaatgaacaagatatggctacttccaaaaaagagagaaagatgtcacctttatcgacactggagtcatcttttgaggctctaaatgtgaaaaagtttgatgttgatccactctatcatcagacatctgcacaatttgatgaaggcggggccaggggtcttttaatgaataatcttggagtatatggtagatgcagagtgctctttgactcatcggaggtgccagggaagtgcatatcatctgagaatcaacatgataaatcagataccattgatctttcttttgctagtgaatatgttgaagagatggtaacgaacatgcggatgaaagatgaaatttcaccaactctcaggcatttggttgatagatttgatgaagataacagaaggccaccagatacatattcatgtgctcaggaatcggcagaacaagatgattctacctataataatgacattgacattgatggtggtgttgcatctcacaacgatgggacctgggattatgatcatgatgagcaaacaagcatggtggaggaggaacataactacgaaaatacaagtttccctagttatcatgaggtttatattacatacagatatac

Protein Analysis

359

Amino Acids

40.56

Weight (kDa)

4.6

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 691
AccII CGCG 3 cut(s) 81, 90, 215
AciI CCGC 7 cut(s) 6, 10, 84, 96, 275, 618, 793
AclWI GGATC 3 cut(s) 152, 175, 572
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 316, 807
AfaI GTAC 2 cut(s) 337, 454
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 323, 773
AjnI CCWGG 4 cut(s) 72, 623, 694, 968
AluBI AGCT 5 cut(s) 190, 253, 280, 347, 425
AluI AGCT 5 cut(s) 190, 253, 280, 347, 425
Alw21I GWGCWC 3 cut(s) 192, 675, 886
Alw26I GTCTC 2 cut(s) 24, 305
AlwI GGATC 3 cut(s) 152, 175, 572
AlwNI CAGNNNCTG 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 5 cut(s) 3, 145, 163, 621, 860
ApeKI GCWGC 2 cut(s) 92, 175
ApoI RAATTY 2 cut(s) 316, 807
AseI ATTAAT 1 cut(s) 231
AspLEI GCGC 2 cut(s) 83, 92
AspS9I GGNCC 4 cut(s) 146, 403, 621, 966
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 510, 804
AsuII TTCGAA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 2 cut(s) 403, 966
BaeGI GKGCMC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 691
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 3 cut(s) 192, 675, 886
BbvI GCAGC 2 cut(s) 104, 187
BccI CCATC 3 cut(s) 772, 932, 956
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 4 cut(s) 74, 625, 696, 970
BclI TGATCA 1 cut(s) 979
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 24, 305
BfaI CTAG 2 cut(s) 759, 1041
BisI GCNGC 5 cut(s) 6, 84, 93, 96, 176
BlsI GCNGC 5 cut(s) 7, 85, 94, 97, 177
Bme1390I CCNGG 5 cut(s) 74, 162, 625, 696, 970
Bme18I GGWCC 2 cut(s) 403, 966
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 4 cut(s) 146, 403, 621, 966
BmiI GGNNCC 5 cut(s) 46, 148, 622, 693, 967
BmrFI CCNGG 5 cut(s) 74, 162, 625, 696, 970
BmsI GCATC 4 cut(s) 295, 451, 653, 959
BpmI CTGGAG 2 cut(s) 369, 554
Bpu10I CCTNAGC 1 cut(s) 885
Bpu14I TTCGAA 1 cut(s) 103
BpuEI CTTGAG 2 cut(s) 206, 388
BpuMI CCSGG 1 cut(s) 162
BsaBI GATNNNNATC 3 cut(s) 156, 576, 978
BsaJI CCNNGG 7 cut(s) 40, 72, 390, 406, 624, 695, 969
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 16, 454, 537
Bse8I GATNNNNATC 3 cut(s) 156, 576, 978
BseBI CCWGG 4 cut(s) 74, 625, 696, 970
BseDI CCNNGG 7 cut(s) 40, 72, 390, 406, 624, 695, 969
BseGI GGATG 4 cut(s) 310, 420, 466, 801
BseJI GATNNNNATC 3 cut(s) 156, 576, 978
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 3 cut(s) 705, 835, 899
BseNI ACTGG 3 cut(s) 16, 454, 537
BseRI GAGGAG 1 cut(s) 1022
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 2 cut(s) 104, 187
BsgI GTGCAG 1 cut(s) 585
Bsh1236I CGCG 3 cut(s) 81, 90, 215
BshFI GGCC 5 cut(s) 5, 147, 165, 623, 862
BshNI GGYRCC 1 cut(s) 691
BsiHKAI GWGCWC 3 cut(s) 192, 675, 886
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 979
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 24, 305
BsmBI CGTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 979
BsnI GGCC 5 cut(s) 5, 147, 165, 623, 862
BsoBI CYCGRG 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 103
Bsp1286I GDGCHC 4 cut(s) 73, 192, 675, 886
Bsp143I GATC 5 cut(s) 157, 180, 577, 745, 979
Bsp68I TCGCGA 1 cut(s) 215
BspACI CCGC 7 cut(s) 6, 10, 84, 96, 275, 618, 793
BspANI GGCC 5 cut(s) 5, 147, 165, 623, 862
BspCNI CTCAG 3 cut(s) 706, 834, 898
BspFNI CGCG 3 cut(s) 81, 90, 215
BspHI TCATGA 2 cut(s) 982, 1048
BspLI GGNNCC 5 cut(s) 46, 148, 622, 693, 967
BspPI GGATC 3 cut(s) 152, 175, 572
BspQI GCTCTTC 1 cut(s) 197
BspT104I TTCGAA 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 691
BsrI ACTGG 3 cut(s) 16, 454, 537
BssECI CCNNGG 7 cut(s) 40, 72, 390, 406, 624, 695, 969
BssMI GATC 5 cut(s) 157, 180, 577, 745, 979
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 4 cut(s) 74, 625, 696, 970
Bst6I CTCTTC 3 cut(s) 197, 288, 768
BstBI TTCGAA 1 cut(s) 103
BstC8I GCNNGC 4 cut(s) 10, 69, 79, 88
BstDEI CTNAG 3 cut(s) 714, 821, 885
BstF5I GGATG 4 cut(s) 310, 420, 466, 801
BstFNI CGCG 3 cut(s) 81, 90, 215
BstHHI GCGC 2 cut(s) 83, 92
BstKTI GATC 5 cut(s) 160, 183, 580, 748, 982
BstMAI GTCTC 2 cut(s) 24, 305
BstMBI GATC 5 cut(s) 157, 180, 577, 745, 979
BstMWI GCNNNNNNNGC 4 cut(s) 83, 87, 89, 92
BstNI CCWGG 4 cut(s) 74, 625, 696, 970
BstNSI RCATGY 1 cut(s) 793
BstSCI CCNGG 5 cut(s) 72, 160, 623, 694, 968
BstSLI GKGCMC 1 cut(s) 73
BstUI CGCG 3 cut(s) 81, 90, 215
BstV1I GCAGC 2 cut(s) 104, 187
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BsuRI GGCC 5 cut(s) 5, 147, 165, 623, 862
BtsCI GGATG 4 cut(s) 310, 420, 466, 801
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 2 cut(s) 134, 530
BtuMI TCGCGA 1 cut(s) 215
Cac8I GCNNGC 4 cut(s) 10, 69, 79, 88
CaiI CAGNNNCTG 1 cut(s) 136
CciI TCATGA 2 cut(s) 982, 1048
CfoI GCGC 2 cut(s) 83, 92
Cfr13I GGNCC 4 cut(s) 146, 403, 621, 966
Csp6I GTAC 2 cut(s) 336, 453
CspCI CAANNNNNGTGG 2 cut(s) 984, 1019
CviAII CATG 6 cut(s) 725, 790, 879, 983, 1000, 1049
CviQI GTAC 2 cut(s) 336, 453
DdeI CTNAG 3 cut(s) 714, 821, 885
DpnI GATC 5 cut(s) 159, 182, 579, 747, 981
DpnII GATC 5 cut(s) 157, 180, 577, 745, 979
DrdI GACNNNNNNGTC 1 cut(s) 535
DseDI GACNNNNNNGTC 1 cut(s) 535
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 197, 288, 768
EarI CTCTTC 3 cut(s) 197, 288, 768
EciI GGCGGA 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 403, 966
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 2 cut(s) 403, 966
EcoRII CCWGG 4 cut(s) 72, 623, 694, 968
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 406
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 6 cut(s) 728, 793, 882, 986, 1003, 1052
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FaqI GGGAC 1 cut(s) 979
FatI CATG 6 cut(s) 724, 789, 878, 982, 999, 1048
FauI CCCGC 2 cut(s) 17, 611
FbaI TGATCA 1 cut(s) 979
Fnu4HI GCNGC 5 cut(s) 6, 84, 93, 96, 176
FokI GGATG 4 cut(s) 317, 427, 473, 808
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 5 cut(s) 6, 84, 93, 96, 176
FspBI CTAG 2 cut(s) 759, 1041
GlaI GCGC 2 cut(s) 82, 91
GluI GCNGC 5 cut(s) 6, 84, 93, 96, 176
GsuI CTGGAG 2 cut(s) 369, 554
HaeIII GGCC 5 cut(s) 5, 147, 165, 623, 862
HapII CCGG 1 cut(s) 162
HhaI GCGC 2 cut(s) 83, 92
Hin1II CATG 6 cut(s) 728, 793, 882, 986, 1003, 1052
Hin6I GCGC 2 cut(s) 81, 90
HinP1I GCGC 2 cut(s) 81, 90
HinfI GANTC 8 cut(s) 152, 377, 418, 536, 680, 718, 890, 908
HpaII CCGG 1 cut(s) 162
HphI GGTGA 2 cut(s) 510, 804
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 6 cut(s) 157, 391, 594, 688, 715, 736
Hpy188III TCNNGA 5 cut(s) 196, 214, 887, 983, 1049
Hpy8I GTNNAC 1 cut(s) 385
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 3 cut(s) 43, 608, 852
HpyCH4V TGCA 4 cut(s) 602, 666, 705, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 87, 89, 92
HpyF3I CTNAG 3 cut(s) 714, 821, 885
Hsp92II CATG 6 cut(s) 728, 793, 882, 986, 1003, 1052
HspAI GCGC 2 cut(s) 81, 90
Ksp22I TGATCA 1 cut(s) 979
Kzo9I GATC 5 cut(s) 157, 180, 577, 745, 979
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 3 cut(s) 50, 250, 277
Lsp1109I GCAGC 2 cut(s) 104, 187
LweI GCATC 4 cut(s) 295, 451, 653, 959
MaeI CTAG 2 cut(s) 759, 1041
MaeIII GTNAC 2 cut(s) 516, 781
MalI GATC 5 cut(s) 159, 182, 579, 747, 981
MboI GATC 5 cut(s) 157, 180, 577, 745, 979
MboII GAAGA 7 cut(s) 28, 117, 184, 305, 367, 785, 860
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 4 cut(s) 73, 192, 675, 886
MluCI AATT 5 cut(s) 199, 228, 316, 605, 807
MlyI GAGTC 2 cut(s) 545, 674
MmeI TCCRAC 1 cut(s) 72
MseI TTAA 2 cut(s) 231, 635
MslI CAYNNNNRTG 3 cut(s) 794, 877, 960
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 5 cut(s) 74, 162, 625, 696, 970
MvaI CCWGG 4 cut(s) 74, 625, 696, 970
MvnI CGCG 3 cut(s) 81, 90, 215
MwoI GCNNNNNNNGC 4 cut(s) 83, 87, 89, 92
NciI CCSGG 1 cut(s) 162
NdeII GATC 5 cut(s) 157, 180, 577, 745, 979
NlaIII CATG 6 cut(s) 728, 793, 882, 986, 1003, 1052
NlaIV GGNNCC 5 cut(s) 46, 148, 622, 693, 967
NmeAIII GCCGAG 2 cut(s) 21, 334
NmuCI GTSAC 1 cut(s) 516
NruI TCGCGA 1 cut(s) 215
NspI RCATGY 1 cut(s) 793
NspV TTCGAA 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 62
PagI TCATGA 2 cut(s) 982, 1048
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 2 cut(s) 48, 60
PfeI GAWTC 6 cut(s) 152, 377, 418, 718, 890, 908
PkrI GCNGC 5 cut(s) 7, 85, 94, 97, 177
PleI GAGTC 2 cut(s) 544, 674
PpsI GAGTC 2 cut(s) 544, 674
PpuMI RGGWCCY 2 cut(s) 403, 966
PshBI ATTAAT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 2 cut(s) 403, 966
Psp6I CCWGG 4 cut(s) 72, 623, 694, 968
PspGI CCWGG 4 cut(s) 72, 623, 694, 968
PspN4I GGNNCC 5 cut(s) 46, 148, 622, 693, 967
PspPI GGNCC 4 cut(s) 146, 403, 621, 966
PspPPI RGGWCCY 2 cut(s) 403, 966
PspXI VCTCGAGB 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 136
PsuI RGATCY 1 cut(s) 180
RruI TCGCGA 1 cut(s) 215
RsaI GTAC 2 cut(s) 337, 454
RsaNI GTAC 2 cut(s) 336, 453
RseI CAYNNNNRTG 3 cut(s) 794, 877, 960
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 2 cut(s) 231, 635
SatI GCNGC 5 cut(s) 6, 84, 93, 96, 176
Sau3AI GATC 5 cut(s) 157, 180, 577, 745, 979
Sau96I GGNCC 4 cut(s) 146, 403, 621, 966
SchI GAGTC 2 cut(s) 545, 674
ScrFI CCNGG 5 cut(s) 74, 162, 625, 696, 970
SduI GDGCHC 4 cut(s) 73, 192, 675, 886
SfaNI GCATC 4 cut(s) 295, 451, 653, 959
Sfr274I CTCGAG 1 cut(s) 62
SfuI TTCGAA 1 cut(s) 103
SinI GGWCC 2 cut(s) 403, 966
SlaI CTCGAG 1 cut(s) 62
SmiMI CAYNNNNRTG 3 cut(s) 794, 877, 960
SmlI CTYRAG 3 cut(s) 62, 185, 367
SmoI CTYRAG 3 cut(s) 62, 185, 367
Sse9I AATT 5 cut(s) 199, 228, 316, 605, 807
SsiI CCGC 7 cut(s) 6, 10, 84, 96, 275, 618, 793
SspMI CTAG 2 cut(s) 759, 1041
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 5 cut(s) 72, 160, 623, 694, 968
StyI CCWWGG 1 cut(s) 406
TaqI TCGA 6 cut(s) 63, 103, 168, 291, 421, 527
TasI AATT 5 cut(s) 199, 228, 316, 605, 807
TatI WGTACW 1 cut(s) 335
TauI GCSGC 3 cut(s) 8, 86, 98
TfiI GAWTC 6 cut(s) 152, 377, 418, 718, 890, 908
Tru1I TTAA 2 cut(s) 231, 635
Tru9I TTAA 2 cut(s) 231, 635
TscAI CASTG 2 cut(s) 141, 537
TseFI GTSAC 1 cut(s) 516
TseI GCWGC 2 cut(s) 92, 175
Tsp45I GTSAC 1 cut(s) 516
TspDTI ATGAA 9 cut(s) 431, 453, 492, 627, 653, 812, 819, 861, 867
TspGWI ACGGA 1 cut(s) 470
TspRI CASTG 2 cut(s) 141, 537
VpaK11BI GGWCC 2 cut(s) 403, 966
VspI ATTAAT 1 cut(s) 231
XapI RAATTY 2 cut(s) 316, 807
XceI RCATGY 1 cut(s) 793
XhoI CTCGAG 1 cut(s) 62
XspI CTAG 2 cut(s) 759, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.