Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002141

Physical Location & Seq

Genomic Coordinates Forward (+)

26807561 .. 26811445

Gene Structure 3885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1195700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGTAGACGACCGTTTTGTCACATTGGTGGCGGATCCTCTATATCATCAGACATCTGCACAGTTGAATGAAGGTGGAGCCAAGGGTCTGCTACTGAATAACCTTGGAGTATATGGAGGATGCAAGGTGCTTTTTGATGCGTACGAAGTTCCAGGGAAGTGCAGATCGTGCTCGTTGCACAGTAATGCCTTGGAATTGATTGATCTCTCTTTTGCCAAAGAATCTCTTGAGCAGATGGTGGTGGGCATATGCGCAAAGAAGGAAATATGTCCTACTCCCAAGGAGATATTTTGCAAATTTGATGAAAATAATCATCGATCATCTCTATATTTTAATATAAGCCAGAATGCAGATCTGAAAACGGATGCCTTTAACGCTGCGAGCCATGACACATCGAACATTTATCATAATGATAATATGGGTGATGATCATGAGAATATGAGTTTCGGAGATCCCTCATTTCAAAGTCATCACAAGGATAGTAACTCTCATACATTATATGAAGCTGATGTGGATGACAGATTTGAGAAAGTTTCCACGTTTTCGTTTCAAGGTTTGGGATTAGAGAAAAATTTATGGGCTGGTCCTGATCACTGGAAGTATTGGAGGCCTAAGGGTACGGAGGAAGCTCCTGCCACTCGAAGCAGACCTGGTACTAATAGATCAAGGAACACAAACCATAGGGAAGTTGAACTTAATTTCACAGCATCTCTAGACAACGAAATTCCAAATATCTTTGCTGTGCCAAAAAGTTCCAAGTCTTTACTTCCACCTGCAAATAGAGTACCAGTCAGTAAAAGGCTACCAGATGACTGCCATTATCAACCTGAGAATCTTATCAAGTTGTTTCTTCTTCCCAGTGTTCTGTGCCTCGGGAAGAGAAGACAACAGCTTACAGATTATAACTCCTGGAAACAAAGTCATAATTTTGATGAAGCATTGCCATCATGGGACAATGAGAGTGTGCTTGGTGGCCAATATTACGATGGATGTATTCATAGCGATGTTGAAGACTCGGATACTCTTGCCTCTCCACCTCGTCAGGTAAGCAAAATTGAAGTTCAGTACGACAGAACTTCAAAACAAGTTGATGTTCATGCATTGAAGGAAACTCTGTGGGGTCATATGCAAGAATCTGCCGAAGTTCCTACTGCGAAGGAATTGAAAGATGTATCCTTCAAGTATATCCTGTCAATTGCCAAGCTGCAGTATCTCAGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

Cnd2

Protein Analysis

408

Amino Acids

46.05

Weight (kDa)

5.66

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cnd2	PF05786	10 - 163	7.7e-11	Condensin complex subunit 2
Cnd2	PF05786	189 - 316	5.3e-14	Condensin complex subunit 2
Cnd2	PF05786	338 - 385	7.3e-08	Condensin complex subunit 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32590
fragaria_vesca	FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_3g23280 FvH4_6g42730 FvH4_6g42730 FvH4_6g42730
malus_domestica	MD03G1195600.v1.1 MD03G1195700.v1.1 MD09G1071300.v1.1 MD11G1212100.v1.1 MD17G1101300.v1.1
prunus_persica	Prupe.3G213700_v2.0.a1 Prupe.4G220400_v2.0.a1
pyrus_communis	pycom03g14790 pycom09g03480 pycom17g09560 pycom17g09570
rosa_chinensis	RchiOBHm_Chr2g0158621 RchiOBHm_Chr5g0041001
rosa_laevigata	RLG00000021100 RLG00000034019
rosa_multiflora	Rmu_co8379437.1_g000001 Rmu_sc0005650.1_g000010 Rmu_sc0030339.1_g000001 Rmu_sc0040010.1_g000001 Rmu_sc0042494.1_g000001 Rmu_ssc0000284.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039700 Rroxscaffold_2G00091170
rosa_rugosa	Rorug02G0471000 Rorug05G0189400
rosa_samantha	Rh2AG536600 Rh2BG549700 Rh2CG520300 Rh2DG559400 Rh5AG274600 Rh5BG279900 Rh5CG312000 Rh5DG287900
rosa_wichuraiana	Rw2G044420 Rw5G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AarI	CACCTGC	1 cut(s)	781
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc16I	TGCGCA	1 cut(s)	253
Acc36I	ACCTGC	1 cut(s)	781
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	3 cut(s)	29, 42, 446
AcoI	YGGCCR	1 cut(s)	973
AcsI	RAATTY	3 cut(s)	296, 571, 723
AfaI	GTAC	5 cut(s)	143, 619, 655, 786, 1067
AjnI	CCWGG	3 cut(s)	151, 649, 908
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	506, 629, 892, 1204
AluI	AGCT	4 cut(s)	506, 629, 892, 1204
Alw21I	GWGCWC	1 cut(s)	173
AlwI	GGATC	3 cut(s)	29, 42, 446
Ama87I	CYCGRG	1 cut(s)	872
AoxI	GGCC	2 cut(s)	608, 973
ApeKI	GCWGC	2 cut(s)	377, 1204
ApoI	RAATTY	3 cut(s)	296, 571, 723
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	584
AsuHPI	GGTGA	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	1 cut(s)	584
AxyI	CCTNAGG	1 cut(s)	612
BalI	TGGCCA	1 cut(s)	975
BamHI	GGATCC	1 cut(s)	34
BbsI	GAAGAC	2 cut(s)	889, 1017
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	364, 1191
BccI	CCATC	3 cut(s)	229, 952, 980
BciT130I	CCWGG	3 cut(s)	153, 651, 910
BciVI	GTATCC	2 cut(s)	1012, 1183
BclI	TGATCA	2 cut(s)	427, 589
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	1 cut(s)	1205
BfuAI	ACCTGC	1 cut(s)	781
BfuI	GTATCC	2 cut(s)	1012, 1183
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	2 cut(s)	378, 1205
BlsI	GCNGC	2 cut(s)	379, 1206
Bme1390I	CCNGG	3 cut(s)	153, 651, 910
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	1 cut(s)	584
BmiI	GGNNCC	2 cut(s)	36, 79
BmrFI	CCNGG	3 cut(s)	153, 651, 910
BmrI	ACTGGG	1 cut(s)	852
BmsI	GCATC	4 cut(s)	110, 127, 355, 716
BmuI	ACTGGG	1 cut(s)	852
BpiI	GAAGAC	2 cut(s)	889, 1017
BpuEI	CTTGAG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	316
BsaJI	CCNNGG	6 cut(s)	81, 103, 152, 189, 279, 871
Bse1I	ACTGG	3 cut(s)	599, 788, 858
Bse21I	CCTNAGG	1 cut(s)	612
Bse3DI	GCAATG	1 cut(s)	938
BseBI	CCWGG	3 cut(s)	153, 651, 910
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	6 cut(s)	81, 103, 152, 189, 279, 871
BseGI	GGATG	4 cut(s)	125, 370, 520, 995
BseMI	GCAATG	1 cut(s)	938
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	3 cut(s)	599, 788, 858
BseXI	GCAGC	2 cut(s)	364, 1191
BsgI	GTGCAG	2 cut(s)	42, 181
Bsh1285I	CGRYCG	1 cut(s)	13
BshFI	GGCC	2 cut(s)	610, 975
BshVI	ATCGAT	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	872
BsiWI	CGTACG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	965
BsmFI	GGGAC	1 cut(s)	965
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	610, 975
BsoBI	CYCGRG	1 cut(s)	872
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	9 cut(s)	34, 164, 202, 317, 352, 427, 451, 589, 662
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	2 cut(s)	610, 975
BspCNI	CTCAG	1 cut(s)	820
BspDI	ATCGAT	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	36, 79
BspMAI	CTGCAG	1 cut(s)	1209
BspMI	ACCTGC	1 cut(s)	781
BspPI	GGATC	3 cut(s)	29, 42, 446
BsrDI	GCAATG	1 cut(s)	938
BsrI	ACTGG	3 cut(s)	599, 788, 858
BssECI	CCNNGG	6 cut(s)	81, 103, 152, 189, 279, 871
BssMI	GATC	9 cut(s)	34, 164, 202, 317, 352, 427, 451, 589, 662
BssT1I	CCWWGG	4 cut(s)	81, 103, 189, 279
Bst2UI	CCWGG	3 cut(s)	153, 651, 910
Bst4CI	ACNGT	3 cut(s)	14, 63, 182
Bst6I	CTCTTC	1 cut(s)	872
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	612, 828, 1214
BstF5I	GGATG	4 cut(s)	125, 370, 520, 995
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	9 cut(s)	37, 167, 205, 320, 355, 430, 454, 592, 665
BstMBI	GATC	9 cut(s)	34, 164, 202, 317, 352, 427, 451, 589, 662
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 374
BstNI	CCWGG	3 cut(s)	153, 651, 910
BstSCI	CCNGG	3 cut(s)	151, 649, 908
BstSFI	CTRYAG	1 cut(s)	1205
BstV1I	GCAGC	2 cut(s)	364, 1191
BstV2I	GAAGAC	2 cut(s)	889, 1017
BstX2I	RGATCY	3 cut(s)	34, 352, 451
BstYI	RGATCY	3 cut(s)	34, 352, 451
Bsu15I	ATCGAT	1 cut(s)	316
Bsu36I	CCTNAGG	1 cut(s)	612
BsuI	GTATCC	2 cut(s)	1012, 1183
BsuRI	GGCC	2 cut(s)	610, 975
BsuTUI	ATCGAT	1 cut(s)	316
BtgZI	GCGATG	1 cut(s)	1017
BtsCI	GGATG	4 cut(s)	125, 370, 520, 995
BtsIMutI	CAGTG	2 cut(s)	592, 865
BveI	ACCTGC	1 cut(s)	781
Cac8I	GCNNGC	1 cut(s)	382
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	584
ClaI	ATCGAT	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	5 cut(s)	142, 618, 654, 785, 1066
CviAII	CATG	4 cut(s)	386, 431, 948, 1097
CviQI	GTAC	5 cut(s)	142, 618, 654, 785, 1066
DdeI	CTNAG	3 cut(s)	612, 828, 1214
DpnI	GATC	9 cut(s)	36, 166, 204, 319, 354, 429, 453, 591, 664
DpnII	GATC	9 cut(s)	34, 164, 202, 317, 352, 427, 451, 589, 662
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	973
Eam1104I	CTCTTC	1 cut(s)	872
EarI	CTCTTC	1 cut(s)	872
EciI	GGCGGA	1 cut(s)	47
Eco130I	CCWWGG	4 cut(s)	81, 103, 189, 279
Eco147I	AGGCCT	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	872
EcoRII	CCWGG	3 cut(s)	151, 649, 908
EcoT14I	CCWWGG	4 cut(s)	81, 103, 189, 279
EcoT22I	ATGCAT	1 cut(s)	1102
ErhI	CCWWGG	4 cut(s)	81, 103, 189, 279
FaeI	CATG	4 cut(s)	389, 434, 951, 1100
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 678, 710
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	4 cut(s)	385, 430, 947, 1096
FauNDI	CATATG	2 cut(s)	248, 1125
FbaI	TGATCA	2 cut(s)	427, 589
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	378, 1205
FokI	GGATG	4 cut(s)	132, 377, 527, 1002
Fsp4HI	GCNGC	2 cut(s)	378, 1205
FspBI	CTAG	1 cut(s)	713
FspI	TGCGCA	1 cut(s)	253
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	2 cut(s)	378, 1205
HaeIII	GGCC	2 cut(s)	610, 975
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	4 cut(s)	389, 434, 951, 1100
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HinfI	GANTC	4 cut(s)	221, 832, 1013, 1133
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	4 cut(s)	51, 357, 449, 1018
Hpy188III	TCNNGA	6 cut(s)	227, 431, 587, 713, 874, 1216
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	5 cut(s)	65, 253, 1099, 1150, 1186
HpyCH4III	ACNGT	3 cut(s)	14, 63, 182
HpyCH4IV	ACGT	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 374
HpyF3I	CTNAG	3 cut(s)	612, 828, 1214
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	4 cut(s)	389, 434, 951, 1100
HspAI	GCGC	1 cut(s)	252
Ksp22I	TGATCA	2 cut(s)	427, 589
Kzo9I	GATC	9 cut(s)	34, 164, 202, 317, 352, 427, 451, 589, 662
LmnI	GCTCC	2 cut(s)	77, 634
Lsp1109I	GCAGC	2 cut(s)	364, 1191
LweI	GCATC	4 cut(s)	110, 127, 355, 716
MabI	ACCWGGT	1 cut(s)	649
MaeI	CTAG	1 cut(s)	713
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	2 cut(s)	19, 482
MalI	GATC	9 cut(s)	36, 166, 204, 319, 354, 429, 453, 591, 664
MboI	GATC	9 cut(s)	34, 164, 202, 317, 352, 427, 451, 589, 662
MboII	GAAGA	5 cut(s)	842, 845, 889, 894, 1022
MfeI	CAATTG	1 cut(s)	1194
MflI	RGATCY	3 cut(s)	34, 352, 451
MhlI	GDGCHC	1 cut(s)	173
MlsI	TGGCCA	1 cut(s)	975
MluCI	AATT	9 cut(s)	194, 296, 571, 697, 723, 925, 1053, 1160, 1194
MluNI	TGGCCA	1 cut(s)	975
MlyI	GAGTC	1 cut(s)	1007
MnlI	CCTC	8 cut(s)	48, 110, 466, 600, 616, 881, 1039, 1047
Mox20I	TGGCCA	1 cut(s)	975
Mph1103I	ATGCAT	1 cut(s)	1102
MscI	TGGCCA	1 cut(s)	975
MseI	TTAA	3 cut(s)	333, 372, 696
MslI	CAYNNNNRTG	3 cut(s)	26, 183, 1002
Msp20I	TGGCCA	1 cut(s)	975
MspR9I	CCNGG	3 cut(s)	153, 651, 910
MunI	CAATTG	1 cut(s)	1194
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	3 cut(s)	153, 651, 910
MwoI	GCNNNNNNNGC	2 cut(s)	168, 374
NdeI	CATATG	2 cut(s)	248, 1125
NdeII	GATC	9 cut(s)	34, 164, 202, 317, 352, 427, 451, 589, 662
NlaIII	CATG	4 cut(s)	389, 434, 951, 1100
NlaIV	GGNNCC	2 cut(s)	36, 79
NmuCI	GTSAC	1 cut(s)	19
NsbI	TGCGCA	1 cut(s)	253
NsiI	ATGCAT	1 cut(s)	1102
OliI	CACNNNNGTG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	430
PaqCI	CACCTGC	1 cut(s)	781
PceI	AGGCCT	1 cut(s)	610
PctI	GAATGC	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	221, 832, 1133
Pfl23II	CGTACG	1 cut(s)	141
PfoI	TCCNGGA	1 cut(s)	908
PkrI	GCNGC	2 cut(s)	379, 1206
PleI	GAGTC	1 cut(s)	1007
PpsI	GAGTC	1 cut(s)	1007
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	3 cut(s)	151, 649, 908
PspGI	CCWGG	3 cut(s)	151, 649, 908
PspLI	CGTACG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	36, 79
PspPI	GGNCC	1 cut(s)	584
PstI	CTGCAG	1 cut(s)	1209
PsuI	RGATCY	3 cut(s)	34, 352, 451
RsaI	GTAC	5 cut(s)	143, 619, 655, 786, 1067
RsaNI	GTAC	5 cut(s)	142, 618, 654, 785, 1066
RseI	CAYNNNNRTG	3 cut(s)	26, 183, 1002
SaqAI	TTAA	3 cut(s)	333, 372, 696
SatI	GCNGC	2 cut(s)	378, 1205
Sau3AI	GATC	9 cut(s)	34, 164, 202, 317, 352, 427, 451, 589, 662
Sau96I	GGNCC	1 cut(s)	584
SchI	GAGTC	1 cut(s)	1007
ScrFI	CCNGG	3 cut(s)	153, 651, 910
SduI	GDGCHC	1 cut(s)	173
SexAI	ACCWGGT	1 cut(s)	649
SfaNI	GCATC	4 cut(s)	110, 127, 355, 716
SfcI	CTRYAG	1 cut(s)	1205
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	3 cut(s)	26, 183, 1002
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	9 cut(s)	194, 296, 571, 697, 723, 925, 1053, 1160, 1194
SseBI	AGGCCT	1 cut(s)	610
SsiI	CCGC	1 cut(s)	32
SspI	AATATT	1 cut(s)	980
SspMI	CTAG	1 cut(s)	713
StuI	AGGCCT	1 cut(s)	610
StyD4I	CCNGG	3 cut(s)	151, 649, 908
StyI	CCWWGG	4 cut(s)	81, 103, 189, 279
TaaI	ACNGT	3 cut(s)	14, 63, 182
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	3 cut(s)	316, 395, 640
TasI	AATT	9 cut(s)	194, 296, 571, 697, 723, 925, 1053, 1160, 1194
TfiI	GAWTC	3 cut(s)	221, 832, 1133
Tru1I	TTAA	3 cut(s)	333, 372, 696
Tru9I	TTAA	3 cut(s)	333, 372, 696
TscAI	CASTG	2 cut(s)	599, 865
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	377, 1204
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	6 cut(s)	84, 318, 516, 948, 986, 1085
TspGWI	ACGGA	2 cut(s)	377, 635
TspRI	CASTG	2 cut(s)	599, 865
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	3 cut(s)	296, 571, 723
XbaI	TCTAGA	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	983
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	713
Zsp2I	ATGCAT	1 cut(s)	1102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.